Rh2CG294700

RNA uridylyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0006587
Physical Location & Seq
Reverse (-)
33830883 .. 33834166
3284 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG294700.1

Sequence Viewer

Length: 942 bp
ATGAAGAACACAAAAGGTACTGAGAGGGAGATAGGGACTCTGTCACTAACTGGAAATTGCCGGTTGCCTGCTGCTGCTGATGCTTCTTTATTGTATTTCTGCAAGATGAAAGCCTGGGCAAAAGCACATAATATCAACTGTCCCAAAGATCGAACTCTGAGCTCTTTTGGCATAATATCTTTGGTTGCTTTTCATCTGCAGACTCGAGATCCGCCAATATTACCTCCATTATCTACTTTGTTTGAAGATGGAACTGATCCTGCAACTGTGATGAAAAGAGTAGATACTTATTTGGAGTTTGGAAAAAGAAACAAAGAATCCGTGGCAGACCTTTTCTTTACCCTGTTAGTCAAGGTAGCATCAGCTGAAAAGCTGTGGCAGAAAGGTCTATGTGCAAGTCTGTACGAAGGATCGTGGACATCAAAATTATGGGATCCTCATTATAATGCTATAAATGTTGAGGATTTCACAGATCCATCTCAAAATGTTGCAAGGGCAGTAGGAACAAGAGAATTTCAAGAGATCTATAGGTGTATTCATTCTTCTCTCAATCACCTGTTAGCGTTTTCAGACAACCAGATGGAGGGAAACAACTTGGTGGATCTTTTGTTTGGCACGAAATCAGTATACATCCCGAGCAAAGCTAAGCATCCTCCACTCCTTAATGGTCACCAGACAAAGCGGATGCGAGAAAGTAGAGGCTGGGAAGAAAACCAGCCAGAGGAAGGCTGGAAAGGAAAGCAAACTCAAGTAGGAACGATGCAAGCTGATGGCCCAGTAGGAACGATGCAAGTAGATGGTTTGGGAGGAGCACAGCAATCCCATGATGAAGCAACTTCAAACCTAAATGTTAAAGATGAAACTCCAGTAGTTCATACTCAAACTCCGCTGGTCGGCACATTGTGCAATTCAATTTCTCCGCACACTCCGCTAGTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTP_transf_2

Protein Analysis

313

Amino Acids

34.64

Weight (kDa)

6.55

Isoelectric Point (pI)

29.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 444
AccI GTMKAC 1 cut(s) 627
AciI CCGC 5 cut(s) 212, 682, 887, 920, 929
AclWI GGATC 7 cut(s) 203, 251, 418, 428, 441, 467, 609
AcsI RAATTY 1 cut(s) 512
AdeI CACNNNGTG 1 cut(s) 903
AfaI GTAC 2 cut(s) 19, 404
AfiI CCNNNNNNNGG 4 cut(s) 583, 721, 725, 893
AgsI TTSAA 4 cut(s) 245, 518, 840, 912
AjnI CCWGG 1 cut(s) 113
AluBI AGCT 5 cut(s) 162, 365, 373, 644, 767
AluI AGCT 5 cut(s) 162, 365, 373, 644, 767
Alw21I GWGCWC 2 cut(s) 164, 814
AlwI GGATC 7 cut(s) 203, 251, 418, 428, 441, 467, 609
Ama87I CYCGRG 2 cut(s) 204, 634
AoxI GGCC 1 cut(s) 772
ApeKI GCWGC 2 cut(s) 71, 74
ApoI RAATTY 1 cut(s) 512
AspS9I GGNCC 1 cut(s) 773
AsuHPI GGTGA 2 cut(s) 545, 662
AvaI CYCGRG 2 cut(s) 204, 634
BamHI GGATCC 1 cut(s) 433
BanII GRGCYC 1 cut(s) 164
BarI GAAGNNNNNNTAC 2 cut(s) 526, 558
Bbv12I GWGCWC 2 cut(s) 164, 814
BbvI GCAGC 2 cut(s) 58, 61
BccI CCATC 5 cut(s) 242, 484, 574, 764, 791
BciT130I CCWGG 1 cut(s) 115
BfaI CTAG 1 cut(s) 932
BfmI CTRYAG 2 cut(s) 197, 526
BglII AGATCT 1 cut(s) 522
BisI GCNGC 2 cut(s) 72, 75
BlpI GCTNAGC 1 cut(s) 645
BlsI GCNGC 2 cut(s) 73, 76
Bme1390I CCNGG 1 cut(s) 115
BmeT110I CYCGRG 2 cut(s) 204, 634
BmgT120I GGNCC 1 cut(s) 773
BmiI GGNNCC 1 cut(s) 435
BmrFI CCNGG 1 cut(s) 115
BmrI ACTGGG 1 cut(s) 770
BmsI GCATC 6 cut(s) 70, 368, 658, 675, 750, 777
BmuI ACTGGG 1 cut(s) 770
BpmI CTGGAG 1 cut(s) 849
Bpu1102I GCTNAGC 1 cut(s) 645
BpuEI CTTGAG 1 cut(s) 732
BsaJI CCNNGG 2 cut(s) 114, 321
BsaXI ACNNNNNCTCC 2 cut(s) 868, 898
Bsc4I CCNNNNNNNGG 4 cut(s) 583, 721, 725, 893
Bse118I RCCGGY 1 cut(s) 60
Bse1I ACTGG 3 cut(s) 55, 776, 866
BseBI CCWGG 1 cut(s) 115
BseDI CCNNGG 2 cut(s) 114, 321
BseGI GGATG 3 cut(s) 630, 649, 690
BseLI CCNNNNNNNGG 4 cut(s) 583, 721, 725, 893
BseMII CTCAG 2 cut(s) 12, 149
BseNI ACTGG 3 cut(s) 55, 776, 866
BseRI GAGGAG 1 cut(s) 822
BseXI GCAGC 2 cut(s) 58, 61
BseYI CCCAGC 1 cut(s) 702
BshFI GGCC 1 cut(s) 774
BsiHKAI GWGCWC 2 cut(s) 164, 814
BsiHKCI CYCGRG 2 cut(s) 204, 634
BsiSI CCGG 1 cut(s) 61
BslFI GGGAC 2 cut(s) 49, 126
BslI CCNNNNNNNGG 4 cut(s) 583, 721, 725, 893
BsmFI GGGAC 2 cut(s) 49, 126
BsnI GGCC 1 cut(s) 774
BsoBI CYCGRG 2 cut(s) 204, 634
Bsp1286I GDGCHC 2 cut(s) 164, 814
Bsp143I GATC 8 cut(s) 148, 208, 256, 410, 433, 472, 522, 601
Bsp1720I GCTNAGC 1 cut(s) 645
BspACI CCGC 5 cut(s) 212, 682, 887, 920, 929
BspANI GGCC 1 cut(s) 774
BspCNI CTCAG 2 cut(s) 13, 150
BspLI GGNNCC 1 cut(s) 435
BspMAI CTGCAG 1 cut(s) 201
BspPI GGATC 7 cut(s) 203, 251, 418, 428, 441, 467, 609
BsrFI RCCGGY 1 cut(s) 60
BsrI ACTGG 3 cut(s) 55, 776, 866
BssAI RCCGGY 1 cut(s) 60
BssECI CCNNGG 2 cut(s) 114, 321
BssMI GATC 8 cut(s) 148, 208, 256, 410, 433, 472, 522, 601
BssNAI GTATAC 1 cut(s) 628
Bst1107I GTATAC 1 cut(s) 628
Bst2UI CCWGG 1 cut(s) 115
Bst4CI ACNGT 2 cut(s) 140, 268
BstAPI GCANNNNNTGC 1 cut(s) 903
BstC8I GCNNGC 2 cut(s) 69, 765
BstDEI CTNAG 3 cut(s) 21, 158, 645
BstDSI CCRYGG 1 cut(s) 321
BstEII GGTNACC 1 cut(s) 668
BstF5I GGATG 3 cut(s) 630, 649, 690
BstKTI GATC 8 cut(s) 151, 211, 259, 413, 436, 475, 525, 604
BstMBI GATC 8 cut(s) 148, 208, 256, 410, 433, 472, 522, 601
BstMWI GCNNNNNNNGC 4 cut(s) 80, 168, 903, 928
BstNI CCWGG 1 cut(s) 115
BstPI GGTNACC 1 cut(s) 668
BstSCI CCNGG 1 cut(s) 113
BstSFI CTRYAG 2 cut(s) 197, 526
BstV1I GCAGC 2 cut(s) 58, 61
BstX2I RGATCY 5 cut(s) 208, 433, 472, 522, 601
BstYI RGATCY 5 cut(s) 208, 433, 472, 522, 601
BstZ17I GTATAC 1 cut(s) 628
BsuRI GGCC 1 cut(s) 774
BtgI CCRYGG 1 cut(s) 321
BtsCI GGATG 3 cut(s) 630, 649, 690
Cac8I GCNNGC 2 cut(s) 69, 765
Cfr10I RCCGGY 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 773
Csp6I GTAC 2 cut(s) 18, 403
CviAII CATG 1 cut(s) 824
CviQI GTAC 2 cut(s) 18, 403
DdeI CTNAG 3 cut(s) 21, 158, 645
DpnI GATC 8 cut(s) 150, 210, 258, 412, 435, 474, 524, 603
DpnII GATC 8 cut(s) 148, 208, 256, 410, 433, 472, 522, 601
DraIII CACNNNGTG 1 cut(s) 903
EciI GGCGGA 1 cut(s) 201
Ecl136II GAGCTC 1 cut(s) 162
Eco24I GRGCYC 1 cut(s) 164
Eco53kI GAGCTC 1 cut(s) 162
Eco88I CYCGRG 2 cut(s) 204, 634
Eco91I GGTNACC 1 cut(s) 668
EcoICRI GAGCTC 1 cut(s) 162
EcoO65I GGTNACC 1 cut(s) 668
EcoRII CCWGG 1 cut(s) 113
EcoT38I GRGCYC 1 cut(s) 164
FaeI CATG 1 cut(s) 827
FaqI GGGAC 2 cut(s) 49, 126
FatI CATG 1 cut(s) 823
FblI GTMKAC 1 cut(s) 627
Fnu4HI GCNGC 2 cut(s) 72, 75
FokI GGATG 3 cut(s) 617, 636, 697
FriOI GRGCYC 1 cut(s) 164
Fsp4HI GCNGC 2 cut(s) 72, 75
FspBI CTAG 1 cut(s) 932
GluI GCNGC 2 cut(s) 72, 75
GsaI CCCAGC 1 cut(s) 706
GsuI CTGGAG 1 cut(s) 849
HaeIII GGCC 1 cut(s) 774
HapII CCGG 1 cut(s) 61
Hin1II CATG 1 cut(s) 827
HinfI GANTC 3 cut(s) 37, 202, 317
HpaII CCGG 1 cut(s) 61
HphI GGTGA 2 cut(s) 545, 662
Hpy166II GTNNAC 2 cut(s) 417, 628
Hpy188I TCNGA 2 cut(s) 159, 571
Hpy188III TCNNGA 3 cut(s) 206, 518, 634
Hpy8I GTNNAC 2 cut(s) 417, 628
HpyAV CCTTC 2 cut(s) 401, 719
HpyCH4III ACNGT 2 cut(s) 140, 268
HpyCH4V TGCA 8 cut(s) 102, 199, 263, 395, 491, 763, 790, 906
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 168, 903, 928
HpyF3I CTNAG 3 cut(s) 21, 158, 645
Hsp92II CATG 1 cut(s) 827
Kzo9I GATC 8 cut(s) 148, 208, 256, 410, 433, 472, 522, 601
LmnI GCTCC 1 cut(s) 809
Lsp1109I GCAGC 2 cut(s) 58, 61
LweI GCATC 6 cut(s) 70, 368, 658, 675, 750, 777
MaeI CTAG 1 cut(s) 932
MaeIII GTNAC 2 cut(s) 42, 668
MalI GATC 8 cut(s) 150, 210, 258, 412, 435, 474, 524, 603
MboI GATC 8 cut(s) 148, 208, 256, 410, 433, 472, 522, 601
MboII GAAGA 4 cut(s) 16, 257, 534, 719
MflI RGATCY 5 cut(s) 208, 433, 472, 522, 601
MhlI GDGCHC 2 cut(s) 164, 814
MluCI AATT 5 cut(s) 55, 425, 512, 907, 912
MlyI GAGTC 2 cut(s) 31, 196
MnlI CCTC 9 cut(s) 18, 234, 447, 454, 577, 663, 692, 715, 800
MseI TTAA 3 cut(s) 663, 852, 940
MslI CAYNNNNRTG 1 cut(s) 444
MspA1I CMGCKG 2 cut(s) 365, 889
MspI CCGG 1 cut(s) 61
MspR9I CCNGG 1 cut(s) 115
MvaI CCWGG 1 cut(s) 115
MwoI GCNNNNNNNGC 4 cut(s) 80, 168, 903, 928
NdeII GATC 8 cut(s) 148, 208, 256, 410, 433, 472, 522, 601
NlaIII CATG 1 cut(s) 827
NlaIV GGNNCC 1 cut(s) 435
NmuCI GTSAC 2 cut(s) 42, 668
PaeR7I CTCGAG 1 cut(s) 204
PfeI GAWTC 1 cut(s) 317
PflFI GACNNNGTC 1 cut(s) 40
PkrI GCNGC 2 cut(s) 73, 76
PleI GAGTC 2 cut(s) 31, 196
PpsI GAGTC 2 cut(s) 31, 196
PsiI TTATAA 1 cut(s) 444
Psp124BI GAGCTC 1 cut(s) 164
Psp6I CCWGG 1 cut(s) 113
PspEI GGTNACC 1 cut(s) 668
PspFI CCCAGC 1 cut(s) 702
PspGI CCWGG 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 435
PspPI GGNCC 1 cut(s) 773
PstI CTGCAG 1 cut(s) 201
PsuI RGATCY 5 cut(s) 208, 433, 472, 522, 601
PsyI GACNNNGTC 1 cut(s) 40
PvuII CAGCTG 1 cut(s) 365
RsaI GTAC 2 cut(s) 19, 404
RsaNI GTAC 2 cut(s) 18, 403
RseI CAYNNNNRTG 1 cut(s) 444
SacI GAGCTC 1 cut(s) 164
SaqAI TTAA 3 cut(s) 663, 852, 940
SatI GCNGC 2 cut(s) 72, 75
Sau3AI GATC 8 cut(s) 148, 208, 256, 410, 433, 472, 522, 601
Sau96I GGNCC 1 cut(s) 773
SchI GAGTC 2 cut(s) 31, 196
ScrFI CCNGG 1 cut(s) 115
SduI GDGCHC 2 cut(s) 164, 814
SfaNI GCATC 6 cut(s) 70, 368, 658, 675, 750, 777
SfcI CTRYAG 2 cut(s) 197, 526
Sfr274I CTCGAG 1 cut(s) 204
SlaI CTCGAG 1 cut(s) 204
SmiMI CAYNNNNRTG 1 cut(s) 444
SmlI CTYRAG 2 cut(s) 204, 747
SmoI CTYRAG 2 cut(s) 204, 747
Sse9I AATT 5 cut(s) 55, 425, 512, 907, 912
SsiI CCGC 5 cut(s) 212, 682, 887, 920, 929
SspI AATATT 1 cut(s) 219
SspMI CTAG 1 cut(s) 932
SstI GAGCTC 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 113
TaaI ACNGT 2 cut(s) 140, 268
TaqI TCGA 2 cut(s) 151, 205
TasI AATT 5 cut(s) 55, 425, 512, 907, 912
TfiI GAWTC 1 cut(s) 317
Tru1I TTAA 3 cut(s) 663, 852, 940
Tru9I TTAA 3 cut(s) 663, 852, 940
TseFI GTSAC 2 cut(s) 42, 668
TseI GCWGC 2 cut(s) 71, 74
Tsp45I GTSAC 2 cut(s) 42, 668
TspDTI ATGAA 8 cut(s) 17, 122, 182, 287, 527, 843, 863, 873
TspGWI ACGGA 1 cut(s) 310
Tth111I GACNNNGTC 1 cut(s) 40
XapI RAATTY 1 cut(s) 512
XcmI CCANNNNNNNNNTGG 1 cut(s) 726
XhoI CTCGAG 1 cut(s) 204
XmiI GTMKAC 1 cut(s) 627
XspI CTAG 1 cut(s) 932
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.