Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006587

Physical Location & Seq

Genomic Coordinates Reverse (-)

24187589 .. 24199137

Gene Structure 11549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G282700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGGCATTAAGCCAAACAGAGCTGCTAAATGAAGCAAAGAAGCTCGAGTTACAAGGATTAAAAAAATACCCCATTTCGCCTGTATTTATATCTAAGCTTGATACACTACTTAATGATGCGTATGCCATTCGCCGTCCAAAGCCGATTGATTATCATAATCGAAGAGATTTGATTCGTATTTTGAATGCAATCACAAAAGAATTATACGGAAATTCTGGCAATTCTCCTGTTGTGGAGGGATTTGGCTCTTTTGTAATGGATATGTTCAGTATTGGAAGTGACCTAGACCTATCTGTTAATTTCGGTAACATTGTAGGCACTTTTCCTCGAGATATGAAGATCAAAACCCTACGGAAGTTTGCTAAAAAGTTTTACTCTCTTCAAAGGGAAGGGCATGTCATTGGTGTGCAAGCAATTATGACTGCTAGGGTGCCAATTATCAAATTTATTGATTGTGGAACTGGGATCGAATGTGATTTATCAGTTGAGAACAGGGATGGCATTCAAAAATCCCAGATCCTCCACCTAGTTTCTGGAATTGATGAAAGGTTTCAGAAACTGAGCTTTCTGATGAAAGCCTGGGCAAAAGCCCATAATATCAATAGTCCCAAAGATAGAACTCTGAGTTCCTTAAGCATAATACAATTGGTTGCTTTTCATCTGCAGACTCGAGATCCGCCAATAATACCTCCATTTTGTACTTTGTTTGAAGATGGAACAGATCCTGTAATTGTGGTGAAGAGAGTGAAGAATTATTCGGAGTACGGAAAAGGCAATAAAGAATCCCTGGCAGATCTTTTCATTACCCTGTTAGTCAAGGTGGCATCGGTTGAAAATCTTTGGCAGAAAGGTCTATGTGCAAGCCTGTATCAAGGATCTTGGACATCAAAATTATGGGATACTCCATATATAAGTGTTGAGGATTTCACAGACCTGTCTCAAAATGTAGCAAGGGCAGTAGGAAGAGAACAGTTTAAAGAGATTTATGGATGTATTCATTCTTCTCTTTGTCACCTTTTATCCTTTTCTGATGGCCATATTCAGGGACACCAGTTAGTTGATCTTTTGTTTGGGTCGGATTCAGTATCTATTGTTCCGAGGCAAATTGATACCGAAAGTAACGATGAAAGTAAAGCTAATCTTCCTGTTCCCCTCAACGGTCACCAGACCAAGAGGATGCGGGTAAGTAAAGGATTGAAAGAAAAACAGCAAGGGGAAGGTTGGAGAGGAGGACAGCAAACTCAAGGTTGGAAACAGCACGGAAACTGGAAGAAGGGAAAGGAAGAGAACAAGCCAATGGCTGGGGTGGAAGAGCACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTP_transf_2

Protein Analysis

441

Amino Acids

49.49

Weight (kDa)

8.9

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45750 AT3G45750 AT3G45750 AT3G45750 AT3G45750 AT3G45760 AT3G45760
fragaria_vesca	FvH4_1g25680 FvH4_1g25680 FvH4_1g25680
prunus_persica	Prupe.4G282700_v2.0.a1 Prupe.4G282700_v2.0.a1 Prupe.4G282700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0124151
rosa_laevigata	RLG00000018787
rosa_multiflora	Rmu_sc0008812.1_g000001 Rmu_sc0031303.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120090
rosa_rugosa	Rorug02G0248900
rosa_samantha	Rh2AG307900 Rh2BG316900 Rh2CG294700 Rh2CG294800 Rh2DG331900 Rh2DG332000
rosa_wichuraiana	Rw2G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	430
AccB7I	CCANNNNNTGG	1 cut(s)	1301
AciI	CCGC	2 cut(s)	677, 1180
AclWI	GGATC	5 cut(s)	473, 511, 668, 716, 883
AcoI	YGGCCR	1 cut(s)	1033
AcsI	RAATTY	2 cut(s)	211, 443
AfaI	GTAC	2 cut(s)	700, 764
AfiI	CCNNNNNNNGG	3 cut(s)	1042, 1157, 1301
AflII	CTTAAG	1 cut(s)	631
AgsI	TTSAA	6 cut(s)	184, 383, 506, 710, 833, 1198
AjnI	CCWGG	2 cut(s)	578, 786
AluBI	AGCT	5 cut(s)	22, 43, 97, 564, 1136
AluI	AGCT	5 cut(s)	22, 43, 97, 564, 1136
Alw21I	GWGCWC	1 cut(s)	1317
Alw26I	GTCTC	1 cut(s)	942
AlwI	GGATC	5 cut(s)	473, 511, 668, 716, 883
AlwNI	CAGNNNCTG	2 cut(s)	559, 725
Ama87I	CYCGRG	3 cut(s)	44, 327, 669
AoxI	GGCC	1 cut(s)	1033
ApeKI	GCWGC	1 cut(s)	22
ApoI	RAATTY	2 cut(s)	211, 443
Asp700I	GAANNNNTTC	1 cut(s)	549
AsuHPI	GGTGA	3 cut(s)	748, 1004, 1154
AvaI	CYCGRG	3 cut(s)	44, 327, 669
BalI	TGGCCA	1 cut(s)	1035
BanI	GGYRCC	1 cut(s)	430
BarI	GAAGNNNNNNTAC	2 cut(s)	985, 1017
Bbv12I	GWGCWC	1 cut(s)	1317
BbvI	GCAGC	1 cut(s)	9
BccI	CCATC	3 cut(s)	491, 707, 1025
BceAI	ACGGC	1 cut(s)	117
BciT130I	CCWGG	2 cut(s)	580, 788
BciVI	GTATCC	1 cut(s)	892
BcoDI	GTCTC	1 cut(s)	942
BfaI	CTAG	4 cut(s)	284, 426, 527, 1321
BfmI	CTRYAG	1 cut(s)	662
BfrI	CTTAAG	1 cut(s)	631
BfuI	GTATCC	1 cut(s)	892
BglII	AGATCT	1 cut(s)	793
BisI	GCNGC	1 cut(s)	23
BlsI	GCNGC	1 cut(s)	24
Bme1390I	CCNGG	2 cut(s)	580, 788
BmeT110I	CYCGRG	3 cut(s)	44, 327, 669
BmiI	GGNNCC	1 cut(s)	432
BmrFI	CCNGG	2 cut(s)	580, 788
BmrI	ACTGGG	1 cut(s)	471
BmsI	GCATC	3 cut(s)	106, 833, 1167
BmuI	ACTGGG	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	1227
BsaJI	CCNNGG	3 cut(s)	579, 786, 1097
Bsc4I	CCNNNNNNNGG	3 cut(s)	1042, 1157, 1301
Bse1I	ACTGG	3 cut(s)	466, 1051, 1271
BseBI	CCWGG	2 cut(s)	580, 788
BseDI	CCNNGG	3 cut(s)	579, 786, 1097
BseGI	GGATG	3 cut(s)	502, 995, 1182
BseLI	CCNNNNNNNGG	3 cut(s)	1042, 1157, 1301
BseMII	CTCAG	2 cut(s)	551, 614
BseNI	ACTGG	3 cut(s)	466, 1051, 1271
BseRI	GAGGAG	1 cut(s)	1242
BseXI	GCAGC	1 cut(s)	9
BseYI	CCCAGC	1 cut(s)	1301
BshFI	GGCC	1 cut(s)	1035
BshNI	GGYRCC	1 cut(s)	430
BsiHKAI	GWGCWC	1 cut(s)	1317
BsiHKCI	CYCGRG	3 cut(s)	44, 327, 669
BslFI	GGGAC	2 cut(s)	591, 1059
BslI	CCNNNNNNNGG	3 cut(s)	1042, 1157, 1301
BsmAI	GTCTC	1 cut(s)	942
BsmFI	GGGAC	2 cut(s)	591, 1059
BsmI	GAATGC	2 cut(s)	190, 501
BsnI	GGCC	1 cut(s)	1035
BsoBI	CYCGRG	3 cut(s)	44, 327, 669
Bsp1286I	GDGCHC	1 cut(s)	1317
Bsp143I	GATC	8 cut(s)	339, 465, 516, 673, 721, 793, 875, 1060
BspACI	CCGC	2 cut(s)	677, 1180
BspANI	GGCC	1 cut(s)	1035
BspCNI	CTCAG	2 cut(s)	552, 615
BspLI	GGNNCC	1 cut(s)	432
BspMAI	CTGCAG	1 cut(s)	666
BspPI	GGATC	5 cut(s)	473, 511, 668, 716, 883
BspQI	GCTCTTC	1 cut(s)	1305
BspT107I	GGYRCC	1 cut(s)	430
BspTI	CTTAAG	1 cut(s)	631
BsrI	ACTGG	3 cut(s)	466, 1051, 1271
BssECI	CCNNGG	3 cut(s)	579, 786, 1097
BssMI	GATC	8 cut(s)	339, 465, 516, 673, 721, 793, 875, 1060
Bst2UI	CCWGG	2 cut(s)	580, 788
Bst4CI	ACNGT	2 cut(s)	972, 1160
Bst6I	CTCTTC	6 cut(s)	157, 384, 734, 958, 1278, 1305
BstAFI	CTTAAG	1 cut(s)	631
BstC8I	GCNNGC	2 cut(s)	411, 862
BstDEI	CTNAG	3 cut(s)	93, 560, 623
BstEII	GGTNACC	1 cut(s)	1160
BstF5I	GGATG	3 cut(s)	502, 995, 1182
BstKTI	GATC	8 cut(s)	342, 468, 519, 676, 724, 796, 878, 1063
BstMAI	GTCTC	1 cut(s)	942
BstMBI	GATC	8 cut(s)	339, 465, 516, 673, 721, 793, 875, 1060
BstNI	CCWGG	2 cut(s)	580, 788
BstNSI	RCATGY	1 cut(s)	398
BstPI	GGTNACC	1 cut(s)	1160
BstSCI	CCNGG	2 cut(s)	578, 786
BstSFI	CTRYAG	1 cut(s)	662
BstV1I	GCAGC	1 cut(s)	9
BstX2I	RGATCY	5 cut(s)	516, 673, 721, 793, 875
BstYI	RGATCY	5 cut(s)	516, 673, 721, 793, 875
BsuI	GTATCC	1 cut(s)	892
BsuRI	GGCC	1 cut(s)	1035
BtsCI	GGATG	3 cut(s)	502, 995, 1182
Cac8I	GCNNGC	2 cut(s)	411, 862
CaiI	CAGNNNCTG	2 cut(s)	559, 725
Csp6I	GTAC	2 cut(s)	699, 763
CviAII	CATG	1 cut(s)	395
CviQI	GTAC	2 cut(s)	699, 763
DdeI	CTNAG	3 cut(s)	93, 560, 623
DpnI	GATC	8 cut(s)	341, 467, 518, 675, 723, 795, 877, 1062
DpnII	GATC	8 cut(s)	339, 465, 516, 673, 721, 793, 875, 1060
DraI	TTTAAA	1 cut(s)	976
EaeI	YGGCCR	1 cut(s)	1033
Eam1104I	CTCTTC	6 cut(s)	157, 384, 734, 958, 1278, 1305
EarI	CTCTTC	6 cut(s)	157, 384, 734, 958, 1278, 1305
EciI	GGCGGA	1 cut(s)	666
Eco88I	CYCGRG	3 cut(s)	44, 327, 669
Eco91I	GGTNACC	1 cut(s)	1160
EcoO65I	GGTNACC	1 cut(s)	1160
EcoRII	CCWGG	2 cut(s)	578, 786
FaeI	CATG	1 cut(s)	398
FalI	AAGNNNNNCTT	2 cut(s)	1125, 1157
FaqI	GGGAC	2 cut(s)	591, 1059
FatI	CATG	1 cut(s)	394
FauI	CCCGC	1 cut(s)	1173
Fnu4HI	GCNGC	1 cut(s)	23
FokI	GGATG	3 cut(s)	509, 1002, 1189
Fsp4HI	GCNGC	1 cut(s)	23
FspBI	CTAG	4 cut(s)	284, 426, 527, 1321
GluI	GCNGC	1 cut(s)	23
GsaI	CCCAGC	1 cut(s)	1305
HaeIII	GGCC	1 cut(s)	1035
Hin1II	CATG	1 cut(s)	398
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	4 cut(s)	172, 667, 782, 1079
HphI	GGTGA	3 cut(s)	748, 1004, 1154
Hpy188I	TCNGA	7 cut(s)	555, 570, 624, 760, 1030, 1078, 1098
Hpy188III	TCNNGA	3 cut(s)	329, 534, 671
HpyAV	CCTTC	3 cut(s)	383, 1211, 1267
HpyCH4III	ACNGT	2 cut(s)	972, 1160
HpyCH4V	TGCA	4 cut(s)	188, 409, 664, 860
HpyF3I	CTNAG	3 cut(s)	93, 560, 623
Hsp92II	CATG	1 cut(s)	398
Kzo9I	GATC	8 cut(s)	339, 465, 516, 673, 721, 793, 875, 1060
LguI	GCTCTTC	1 cut(s)	1305
Lsp1109I	GCAGC	1 cut(s)	9
LweI	GCATC	3 cut(s)	106, 833, 1167
MaeI	CTAG	4 cut(s)	284, 426, 527, 1321
MaeIII	GTNAC	6 cut(s)	48, 278, 305, 1010, 1118, 1160
MalI	GATC	8 cut(s)	341, 467, 518, 675, 723, 795, 877, 1062
MboI	GATC	8 cut(s)	339, 465, 516, 673, 721, 793, 875, 1060
MfeI	CAATTG	1 cut(s)	644
MflI	RGATCY	5 cut(s)	516, 673, 721, 793, 875
MhlI	GDGCHC	1 cut(s)	1317
MlsI	TGGCCA	1 cut(s)	1035
MluNI	TGGCCA	1 cut(s)	1035
MlyI	GAGTC	1 cut(s)	661
MmeI	TCCRAC	3 cut(s)	1056, 1202, 1229
Mox20I	TGGCCA	1 cut(s)	1035
MroXI	GAANNNNTTC	1 cut(s)	549
MscI	TGGCCA	1 cut(s)	1035
MseI	TTAA	6 cut(s)	8, 59, 111, 297, 632, 975
MslI	CAYNNNNRTG	1 cut(s)	404
Msp20I	TGGCCA	1 cut(s)	1035
MspCI	CTTAAG	1 cut(s)	631
MspR9I	CCNGG	2 cut(s)	580, 788
MunI	CAATTG	1 cut(s)	644
Mva1269I	GAATGC	2 cut(s)	190, 501
MvaI	CCWGG	2 cut(s)	580, 788
NdeII	GATC	8 cut(s)	339, 465, 516, 673, 721, 793, 875, 1060
NlaIII	CATG	1 cut(s)	398
NlaIV	GGNNCC	1 cut(s)	432
NmuCI	GTSAC	3 cut(s)	278, 1010, 1160
NspI	RCATGY	1 cut(s)	398
PaeR7I	CTCGAG	3 cut(s)	44, 327, 669
PciSI	GCTCTTC	1 cut(s)	1305
PctI	GAATGC	2 cut(s)	190, 501
PdmI	GAANNNNTTC	1 cut(s)	549
PfeI	GAWTC	3 cut(s)	172, 782, 1079
PflMI	CCANNNNNTGG	1 cut(s)	1301
PkrI	GCNGC	1 cut(s)	24
PleI	GAGTC	1 cut(s)	661
PpsI	GAGTC	1 cut(s)	661
Psp6I	CCWGG	2 cut(s)	578, 786
PspEI	GGTNACC	1 cut(s)	1160
PspFI	CCCAGC	1 cut(s)	1301
PspGI	CCWGG	2 cut(s)	578, 786
PspN4I	GGNNCC	1 cut(s)	432
PspXI	VCTCGAGB	1 cut(s)	44
PsrI	GAACNNNNNNTAC	2 cut(s)	1077, 1109
PstI	CTGCAG	1 cut(s)	666
PstNI	CAGNNNCTG	2 cut(s)	559, 725
PsuI	RGATCY	5 cut(s)	516, 673, 721, 793, 875
RsaI	GTAC	2 cut(s)	700, 764
RsaNI	GTAC	2 cut(s)	699, 763
RseI	CAYNNNNRTG	1 cut(s)	404
SapI	GCTCTTC	1 cut(s)	1305
SaqAI	TTAA	6 cut(s)	8, 59, 111, 297, 632, 975
SatI	GCNGC	1 cut(s)	23
Sau3AI	GATC	8 cut(s)	339, 465, 516, 673, 721, 793, 875, 1060
SchI	GAGTC	1 cut(s)	661
ScrFI	CCNGG	2 cut(s)	580, 788
SduI	GDGCHC	1 cut(s)	1317
SfaNI	GCATC	3 cut(s)	106, 833, 1167
SfcI	CTRYAG	1 cut(s)	662
Sfr274I	CTCGAG	3 cut(s)	44, 327, 669
SlaI	CTCGAG	3 cut(s)	44, 327, 669
SmiMI	CAYNNNNRTG	1 cut(s)	404
SmlI	CTYRAG	5 cut(s)	44, 327, 631, 669, 1242
SmoI	CTYRAG	5 cut(s)	44, 327, 631, 669, 1242
SsiI	CCGC	2 cut(s)	677, 1180
SspMI	CTAG	4 cut(s)	284, 426, 527, 1321
StyD4I	CCNGG	2 cut(s)	578, 786
TaaI	ACNGT	2 cut(s)	972, 1160
TaqI	TCGA	5 cut(s)	45, 160, 328, 468, 670
TatI	WGTACW	1 cut(s)	698
TfiI	GAWTC	3 cut(s)	172, 782, 1079
Tru1I	TTAA	6 cut(s)	8, 59, 111, 297, 632, 975
Tru9I	TTAA	6 cut(s)	8, 59, 111, 297, 632, 975
TseFI	GTSAC	3 cut(s)	278, 1010, 1160
TseI	GCWGC	1 cut(s)	22
Tsp45I	GTSAC	3 cut(s)	278, 1010, 1160
TspDTI	ATGAA	8 cut(s)	45, 350, 558, 587, 647, 790, 986, 1140
TspGWI	ACGGA	4 cut(s)	222, 367, 780, 1275
Van91I	CCANNNNNTGG	1 cut(s)	1301
Vha464I	CTTAAG	1 cut(s)	631
XapI	RAATTY	2 cut(s)	211, 443
XceI	RCATGY	1 cut(s)	398
XcmI	CCANNNNNNNNNTGG	1 cut(s)	530
XhoI	CTCGAG	3 cut(s)	44, 327, 669
XmnI	GAANNNNTTC	1 cut(s)	549
XspI	CTAG	4 cut(s)	284, 426, 527, 1321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.