Rroxscaffold_2G00120090

RNA uridylyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0006587
Physical Location & Seq
Forward (+)
52175148 .. 52181267
6120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00120090.1

Sequence Viewer

Length: 1329 bp
ATGTCATCGTTAGTTGTAAATCAGTTCTCTGGCTACTTCAATGGAGTTGTATTTTCTGCTTTTGGCAATATTGGCAATTCTCCTGTTGTGGAGGTCTATGGCTCTTTTGTAATGGATTTGTTCAGTGATGAAAGTGATCTTGATCTCTCTGTTAATTTCAGCAACAGTGTAGGCGATCTTCCTCGAGATATGAAGATCAAAACTCTTCGGAAGTTTGCTAAAAAGTTTTTGTCTCTTCAAAGGGCAGGGCATGTTGCTGGTGTACAGACGATTGTGAGTGCTAGGGTTCCTATAATCAAGCTTATAGACTGTGGAACCGGAATTGAGTGTGATTTATCAATTGAGAACAGGGATGGCATTGTAAAATCCCAGATTGTCTACATAATATCTAGAATTGACGGAAGGACCTATAGGCATGAAATGAACCCATGTCATATTTATTCACTGTTTCAGATGAAAGCCTGGGCAAAAGCACATAATATCAACTGTCCCAAAGATCGAACTCTGAGCTCTTTTGGCATAATATCTTTGGTTGCTTTTCATCTGCAGAGAATGGTCAGGCATCCTTTTTTCCATGTTGTCTGGGATGCGACTGGTCAAGATGGAACTGATCCTGCAACTGTGATGAAAAGAGTAGATACTTATTTGGAGTTTGGAAAAAGAAACAAAGAATCCGTGGCAGACCTTTTCTTTACCCTGTTAGTCAAGGTAGCATCAGCTGAAAAGCTGTGGCAGAAAGGTCTATGTGCAAGTCTGTACGAAGGATCGTGGACATCAAAATTATGGGATCCTCATTATAATGCTATAAATGTTGAGGATTTCACAGATCCATCTCAAAATGTTGCAAGGGCTGTAGGAACAGGAGAATTTCAAGAGATCTATAGGTGTATTCATTCTTCTCTCAGTCACCTGTTAGCATTTTCAGACAACCAGATGGAGGGAAACAACTTGGTGGATCTTTTGTTTGGCACGAAGTCAGTATACATCCCGAGCAAAGCTAAGCATCCTCCACTCCTTAATGGTGACCAGACAAAGCGGATGCAAGTAAGTAGAGGCTGGGAAGAAAACCAGCCAGAGGAAGGCTGGAAAGGAAAGCAAACTCAAGGTTCAGGAACAGCACAGCACGTGGAAGTTAGAGGAGGAAGACAACAAGCTGATGGCCCAGTAGGAACGATGCAAGTAGATGGTTTGGGAGGAGCACAGCAATCCCATGATGAAGCAACTTCAAACCTAAATGTTAAAGATGAAACTCCAGTAGTTCATACTCAAACTCTGCTGGTCGGCACATTTTGCAATTCAATTTCTCCGCACACTCCGCTAGTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTP_transf_2

Protein Analysis

442

Amino Acids

49.01

Weight (kDa)

6.57

Isoelectric Point (pI)

29.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MTPAP-like_central PF22600 25 - 130 1.9e-21 Poly(A) RNA polymerase, mitochondrial-like, central palm domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 798
AccI GTMKAC 2 cut(s) 378, 981
AciI CCGC 3 cut(s) 1036, 1307, 1316
AclWI GGATC 6 cut(s) 605, 772, 782, 795, 821, 963
AcsI RAATTY 1 cut(s) 866
AcvI CACGTG 1 cut(s) 1126
AfaI GTAC 2 cut(s) 264, 758
AfiI CCNNNNNNNGG 3 cut(s) 937, 1075, 1079
AgsI TTSAA 5 cut(s) 40, 239, 872, 1227, 1299
AjnI CCWGG 1 cut(s) 461
AluBI AGCT 6 cut(s) 301, 510, 719, 727, 998, 1154
AluI AGCT 6 cut(s) 301, 510, 719, 727, 998, 1154
Alw21I GWGCWC 2 cut(s) 512, 1201
Alw26I GTCTC 1 cut(s) 237
AlwI GGATC 6 cut(s) 605, 772, 782, 795, 821, 963
Ama87I CYCGRG 2 cut(s) 183, 988
AoxI GGCC 1 cut(s) 1159
ApoI RAATTY 1 cut(s) 866
AspS9I GGNCC 2 cut(s) 405, 1160
AsuHPI GGTGA 2 cut(s) 899, 1034
AvaI CYCGRG 2 cut(s) 183, 988
AvaII GGWCC 1 cut(s) 405
BamHI GGATCC 1 cut(s) 787
BanII GRGCYC 1 cut(s) 512
BarI GAAGNNNNNNTAC 6 cut(s) 162, 194, 880, 912, 965, 997
BbrPI CACGTG 1 cut(s) 1126
BbsI GAAGAC 1 cut(s) 1150
Bbv12I GWGCWC 2 cut(s) 512, 1201
BccI CCATC 6 cut(s) 347, 596, 838, 928, 1151, 1178
BciT130I CCWGG 1 cut(s) 463
BcoDI GTCTC 1 cut(s) 237
BfaI CTAG 3 cut(s) 282, 390, 1319
BfmI CTRYAG 4 cut(s) 409, 545, 852, 880
BglII AGATCT 1 cut(s) 876
BlpI GCTNAGC 1 cut(s) 999
Bme1390I CCNGG 1 cut(s) 463
Bme18I GGWCC 1 cut(s) 405
BmeT110I CYCGRG 2 cut(s) 183, 988
BmgT120I GGNCC 2 cut(s) 405, 1160
BmiI GGNNCC 3 cut(s) 288, 316, 789
BmrFI CCNGG 1 cut(s) 463
BmrI ACTGGG 1 cut(s) 1157
BmsI GCATC 6 cut(s) 571, 577, 722, 1012, 1029, 1164
BmuI ACTGGG 1 cut(s) 1157
BpiI GAAGAC 1 cut(s) 1150
BpmI CTGGAG 1 cut(s) 1236
Bpu1102I GCTNAGC 1 cut(s) 999
BpuEI CTTGAG 1 cut(s) 1086
BsaAI YACGTR 1 cut(s) 1126
BsaBI GATNNNNATC 1 cut(s) 141
BsaJI CCNNGG 2 cut(s) 462, 675
BsaWI WCCGGW 1 cut(s) 317
Bsc4I CCNNNNNNNGG 3 cut(s) 937, 1075, 1079
Bse1I ACTGG 3 cut(s) 598, 1163, 1253
Bse8I GATNNNNATC 1 cut(s) 141
BseBI CCWGG 1 cut(s) 463
BseDI CCNNGG 2 cut(s) 462, 675
BseGI GGATG 6 cut(s) 358, 562, 592, 984, 1003, 1044
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 3 cut(s) 937, 1075, 1079
BseMII CTCAG 2 cut(s) 497, 916
BseNI ACTGG 3 cut(s) 598, 1163, 1253
BseRI GAGGAG 2 cut(s) 1152, 1209
BseYI CCCAGC 1 cut(s) 1056
BshFI GGCC 1 cut(s) 1161
BsiHKAI GWGCWC 2 cut(s) 512, 1201
BsiHKCI CYCGRG 2 cut(s) 183, 988
BsiSI CCGG 1 cut(s) 318
BslFI GGGAC 1 cut(s) 474
BslI CCNNNNNNNGG 3 cut(s) 937, 1075, 1079
BsmAI GTCTC 1 cut(s) 237
BsmFI GGGAC 1 cut(s) 474
BsnI GGCC 1 cut(s) 1161
BsoBI CYCGRG 2 cut(s) 183, 988
Bsp1286I GDGCHC 2 cut(s) 512, 1201
Bsp1407I TGTACA 1 cut(s) 262
Bsp1720I GCTNAGC 1 cut(s) 999
BspACI CCGC 3 cut(s) 1036, 1307, 1316
BspANI GGCC 1 cut(s) 1161
BspCNI CTCAG 2 cut(s) 498, 915
BspLI GGNNCC 3 cut(s) 288, 316, 789
BspMAI CTGCAG 1 cut(s) 549
BspPI GGATC 6 cut(s) 605, 772, 782, 795, 821, 963
BsrGI TGTACA 1 cut(s) 262
BsrI ACTGG 3 cut(s) 598, 1163, 1253
BssECI CCNNGG 2 cut(s) 462, 675
BssNAI GTATAC 1 cut(s) 982
Bst1107I GTATAC 1 cut(s) 982
Bst2UI CCWGG 1 cut(s) 463
Bst4CI ACNGT 5 cut(s) 167, 311, 447, 488, 622
Bst6I CTCTTC 2 cut(s) 210, 240
BstAPI GCANNNNNTGC 1 cut(s) 1290
BstAUI TGTACA 1 cut(s) 262
BstBAI YACGTR 1 cut(s) 1126
BstDEI CTNAG 3 cut(s) 506, 902, 999
BstDSI CCRYGG 1 cut(s) 675
BstEII GGTNACC 1 cut(s) 1022
BstF5I GGATG 6 cut(s) 358, 562, 592, 984, 1003, 1044
BstMAI GTCTC 1 cut(s) 237
BstMWI GCNNNNNNNGC 4 cut(s) 72, 516, 1290, 1315
BstNI CCWGG 1 cut(s) 463
BstNSI RCATGY 1 cut(s) 254
BstPI GGTNACC 1 cut(s) 1022
BstSCI CCNGG 1 cut(s) 461
BstSFI CTRYAG 4 cut(s) 409, 545, 852, 880
BstV2I GAAGAC 1 cut(s) 1150
BstX2I RGATCY 4 cut(s) 787, 826, 876, 955
BstYI RGATCY 4 cut(s) 787, 826, 876, 955
BstZ17I GTATAC 1 cut(s) 982
BsuRI GGCC 1 cut(s) 1161
BtgI CCRYGG 1 cut(s) 675
BtsCI GGATG 6 cut(s) 358, 562, 592, 984, 1003, 1044
BtsIMutI CAGTG 3 cut(s) 130, 172, 443
Cfr13I GGNCC 2 cut(s) 405, 1160
Csp6I GTAC 2 cut(s) 263, 757
CviAII CATG 5 cut(s) 251, 416, 429, 575, 1211
CviQI GTAC 2 cut(s) 263, 757
DdeI CTNAG 3 cut(s) 506, 902, 999
Eam1104I CTCTTC 2 cut(s) 210, 240
EarI CTCTTC 2 cut(s) 210, 240
Ecl136II GAGCTC 1 cut(s) 510
Eco24I GRGCYC 1 cut(s) 512
Eco47I GGWCC 1 cut(s) 405
Eco53kI GAGCTC 1 cut(s) 510
Eco72I CACGTG 1 cut(s) 1126
Eco88I CYCGRG 2 cut(s) 183, 988
Eco91I GGTNACC 1 cut(s) 1022
EcoICRI GAGCTC 1 cut(s) 510
EcoO109I RGGNCCY 1 cut(s) 405
EcoO65I GGTNACC 1 cut(s) 1022
EcoRII CCWGG 1 cut(s) 461
EcoT38I GRGCYC 1 cut(s) 512
FaeI CATG 5 cut(s) 254, 419, 432, 578, 1214
FaqI GGGAC 1 cut(s) 474
FatI CATG 5 cut(s) 250, 415, 428, 574, 1210
FblI GTMKAC 2 cut(s) 378, 981
FokI GGATG 6 cut(s) 365, 549, 599, 971, 990, 1051
FriOI GRGCYC 1 cut(s) 512
FspBI CTAG 3 cut(s) 282, 390, 1319
GsaI CCCAGC 1 cut(s) 1060
GsuI CTGGAG 1 cut(s) 1236
HaeIII GGCC 1 cut(s) 1161
HapII CCGG 1 cut(s) 318
Hin1II CATG 5 cut(s) 254, 419, 432, 578, 1214
HindIII AAGCTT 1 cut(s) 299
HinfI GANTC 1 cut(s) 671
HpaII CCGG 1 cut(s) 318
HphI GGTGA 2 cut(s) 899, 1034
Hpy166II GTNNAC 4 cut(s) 263, 379, 771, 982
Hpy188I TCNGA 4 cut(s) 210, 453, 507, 925
Hpy188III TCNNGA 7 cut(s) 140, 185, 390, 599, 872, 988, 1110
Hpy8I GTNNAC 4 cut(s) 263, 379, 771, 982
HpyAV CCTTC 3 cut(s) 396, 755, 1073
HpyCH4III ACNGT 5 cut(s) 167, 311, 447, 488, 622
HpyCH4IV ACGT 1 cut(s) 1125
HpyCH4V TGCA 7 cut(s) 547, 617, 749, 845, 1042, 1177, 1293
HpyF10VI GCNNNNNNNGC 4 cut(s) 72, 516, 1290, 1315
HpyF3I CTNAG 3 cut(s) 506, 902, 999
HpySE526I ACGT 1 cut(s) 1125
Hsp92II CATG 5 cut(s) 254, 419, 432, 578, 1214
LmnI GCTCC 1 cut(s) 1196
LweI GCATC 6 cut(s) 571, 577, 722, 1012, 1029, 1164
MaeI CTAG 3 cut(s) 282, 390, 1319
MaeII ACGT 1 cut(s) 1125
MaeIII GTNAC 2 cut(s) 905, 1022
MboII GAAGA 7 cut(s) 170, 197, 205, 227, 888, 1073, 1155
MfeI CAATTG 1 cut(s) 339
MflI RGATCY 4 cut(s) 787, 826, 876, 955
MhlI GDGCHC 2 cut(s) 512, 1201
MluCI AATT 9 cut(s) 76, 154, 321, 339, 393, 779, 866, 1294, 1299
MseI TTAA 4 cut(s) 153, 1017, 1239, 1327
MslI CAYNNNNRTG 1 cut(s) 798
MspA1I CMGCKG 1 cut(s) 719
MspI CCGG 1 cut(s) 318
MspR9I CCNGG 1 cut(s) 463
MunI CAATTG 1 cut(s) 339
MvaI CCWGG 1 cut(s) 463
MwoI GCNNNNNNNGC 4 cut(s) 72, 516, 1290, 1315
NlaIII CATG 5 cut(s) 254, 419, 432, 578, 1214
NlaIV GGNNCC 3 cut(s) 288, 316, 789
NmuCI GTSAC 2 cut(s) 905, 1022
NspI RCATGY 1 cut(s) 254
PaeR7I CTCGAG 1 cut(s) 183
PfeI GAWTC 1 cut(s) 671
PmaCI CACGTG 1 cut(s) 1126
PmlI CACGTG 1 cut(s) 1126
Ppu21I YACGTR 1 cut(s) 1126
PpuMI RGGWCCY 1 cut(s) 405
PsiI TTATAA 1 cut(s) 798
Psp124BI GAGCTC 1 cut(s) 512
Psp5II RGGWCCY 1 cut(s) 405
Psp6I CCWGG 1 cut(s) 461
PspCI CACGTG 1 cut(s) 1126
PspEI GGTNACC 1 cut(s) 1022
PspFI CCCAGC 1 cut(s) 1056
PspGI CCWGG 1 cut(s) 461
PspN4I GGNNCC 3 cut(s) 288, 316, 789
PspPI GGNCC 2 cut(s) 405, 1160
PspPPI RGGWCCY 1 cut(s) 405
PstI CTGCAG 1 cut(s) 549
PsuI RGATCY 4 cut(s) 787, 826, 876, 955
PvuII CAGCTG 1 cut(s) 719
RsaI GTAC 2 cut(s) 264, 758
RsaNI GTAC 2 cut(s) 263, 757
RseI CAYNNNNRTG 1 cut(s) 798
SacI GAGCTC 1 cut(s) 512
SaqAI TTAA 4 cut(s) 153, 1017, 1239, 1327
Sau96I GGNCC 2 cut(s) 405, 1160
ScrFI CCNGG 1 cut(s) 463
SduI GDGCHC 2 cut(s) 512, 1201
SfaNI GCATC 6 cut(s) 571, 577, 722, 1012, 1029, 1164
SfcI CTRYAG 4 cut(s) 409, 545, 852, 880
Sfr274I CTCGAG 1 cut(s) 183
SinI GGWCC 1 cut(s) 405
SlaI CTCGAG 1 cut(s) 183
SmiMI CAYNNNNRTG 1 cut(s) 798
SmlI CTYRAG 2 cut(s) 183, 1101
SmoI CTYRAG 2 cut(s) 183, 1101
Sse9I AATT 9 cut(s) 76, 154, 321, 339, 393, 779, 866, 1294, 1299
SsiI CCGC 3 cut(s) 1036, 1307, 1316
SspI AATATT 1 cut(s) 70
SspMI CTAG 3 cut(s) 282, 390, 1319
SstI GAGCTC 1 cut(s) 512
StyD4I CCNGG 1 cut(s) 461
TaaI ACNGT 5 cut(s) 167, 311, 447, 488, 622
TaiI ACGT 1 cut(s) 1128
TaqI TCGA 2 cut(s) 184, 499
TasI AATT 9 cut(s) 76, 154, 321, 339, 393, 779, 866, 1294, 1299
TatI WGTACW 1 cut(s) 262
TfiI GAWTC 1 cut(s) 671
Tru1I TTAA 4 cut(s) 153, 1017, 1239, 1327
Tru9I TTAA 4 cut(s) 153, 1017, 1239, 1327
TscAI CASTG 3 cut(s) 130, 172, 450
TseFI GTSAC 2 cut(s) 905, 1022
Tsp45I GTSAC 2 cut(s) 905, 1022
TspGWI ACGGA 2 cut(s) 414, 664
TspRI CASTG 3 cut(s) 130, 172, 450
VpaK11BI GGWCC 1 cut(s) 405
XapI RAATTY 1 cut(s) 866
XbaI TCTAGA 1 cut(s) 389
XceI RCATGY 1 cut(s) 254
XcmI CCANNNNNNNNNTGG 1 cut(s) 1080
XhoI CTCGAG 1 cut(s) 183
XmiI GTMKAC 2 cut(s) 378, 981
XspI CTAG 3 cut(s) 282, 390, 1319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.