Rh2CG294800

RNA uridylyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0006587
Physical Location & Seq
Reverse (-)
33834710 .. 33837788
3079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG294800.1

Sequence Viewer

Length: 426 bp
ATGGCATTGAGCCGCACTGAACTGCTAAATGAAGCAAAGAAGCTTGAGTTACAAGGATTACAGAAATATTTGATCTCTCCTCTATGTATGCCTAAACTTGATCAACTACTTAATGATGTGTATGCGGCTCGCCGTCCTAAGCCAGTTGATTATCGCAATCGAAGAGATTTGATTCGTATTTTCAATGCCATCTCCAAGGAATTATATGGCAATATTGGCAATTCTCCTGTTGTGGAGGTCTATGGCTCTTTTGTGATGGATTTGTTCAGTGATGAAAGTGATCTTGATCTCTCTGTTAATTTCAGCAACAGTGTAGGCGATCTTCCTCGAGATATGAAGATCAAAACTCTTCGGAAGTTTGCTAAAAAGTTTTTGTCTTTTCAAAGTAATAGCCTCTACTATGCTTATATGTTGGCAACCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTP_transf_2

Protein Analysis

141

Amino Acids

16.26

Weight (kDa)

9.16

Isoelectric Point (pI)

50.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MTPAP-like_central PF22600 33 - 126 3.2e-10 Poly(A) RNA polymerase, mitochondrial-like, central palm domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 13, 125
AgsI TTSAA 2 cut(s) 184, 383
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
Ama87I CYCGRG 1 cut(s) 327
AvaI CYCGRG 1 cut(s) 327
BarI GAAGNNNNNNTAC 2 cut(s) 306, 338
BccI CCATC 2 cut(s) 197, 250
BceAI ACGGC 1 cut(s) 117
BclI TGATCA 1 cut(s) 100
BisI GCNGC 2 cut(s) 13, 126
BlsI GCNGC 2 cut(s) 14, 127
BmeT110I CYCGRG 1 cut(s) 327
Bpu10I CCTNAGC 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 65
BsaBI GATNNNNATC 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 195
Bse1I ACTGG 1 cut(s) 143
Bse8I GATNNNNATC 1 cut(s) 285
BseDI CCNNGG 1 cut(s) 195
BseJI GATNNNNATC 1 cut(s) 285
BseNI ACTGG 1 cut(s) 143
BseRI GAGGAG 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 327
BsoBI CYCGRG 1 cut(s) 327
Bsp143I GATC 6 cut(s) 72, 100, 280, 286, 319, 339
BspACI CCGC 2 cut(s) 13, 125
BsrI ACTGG 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 6 cut(s) 72, 100, 280, 286, 319, 339
BssT1I CCWWGG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 311
Bst6I CTCTTC 2 cut(s) 157, 354
BstC8I GCNNGC 1 cut(s) 130
BstDEI CTNAG 1 cut(s) 138
BstKTI GATC 6 cut(s) 75, 103, 283, 289, 322, 342
BstMBI GATC 6 cut(s) 72, 100, 280, 286, 319, 339
BstMWI GCNNNNNNNGC 1 cut(s) 216
BtsIMutI CAGTG 3 cut(s) 15, 274, 316
Cac8I GCNNGC 1 cut(s) 130
CviJI RGCY 6 cut(s) 12, 43, 128, 142, 246, 393
CviKI_1 RGCY 6 cut(s) 12, 43, 128, 142, 246, 393
DdeI CTNAG 1 cut(s) 138
DpnI GATC 6 cut(s) 74, 102, 282, 288, 321, 341
DpnII GATC 6 cut(s) 72, 100, 280, 286, 319, 339
Eam1104I CTCTTC 2 cut(s) 157, 354
EarI CTCTTC 2 cut(s) 157, 354
Eco130I CCWWGG 1 cut(s) 195
Eco88I CYCGRG 1 cut(s) 327
EcoT14I CCWWGG 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 195
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 2 cut(s) 13, 126
Fsp4HI GCNGC 2 cut(s) 13, 126
GluI GCNGC 2 cut(s) 13, 126
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 1 cut(s) 172
Hpy188I TCNGA 1 cut(s) 354
Hpy188III TCNNGA 2 cut(s) 284, 329
HpyCH4III ACNGT 1 cut(s) 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 216
HpyF3I CTNAG 1 cut(s) 138
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 6 cut(s) 72, 100, 280, 286, 319, 339
LpnPI CCDG 2 cut(s) 156, 240
MaeIII GTNAC 1 cut(s) 48
MalI GATC 6 cut(s) 74, 102, 282, 288, 321, 341
MboI GATC 6 cut(s) 72, 100, 280, 286, 319, 339
MboII GAAGA 4 cut(s) 174, 314, 341, 349
MluCI AATT 3 cut(s) 200, 220, 298
MnlI CCTC 4 cut(s) 90, 229, 336, 404
MseI TTAA 3 cut(s) 111, 297, 424
MwoI GCNNNNNNNGC 1 cut(s) 216
NdeII GATC 6 cut(s) 72, 100, 280, 286, 319, 339
PaeR7I CTCGAG 1 cut(s) 327
PfeI GAWTC 1 cut(s) 172
PkrI GCNGC 2 cut(s) 14, 127
SaqAI TTAA 3 cut(s) 111, 297, 424
SatI GCNGC 2 cut(s) 13, 126
Sau3AI GATC 6 cut(s) 72, 100, 280, 286, 319, 339
SetI ASST 3 cut(s) 45, 240, 422
Sfr274I CTCGAG 1 cut(s) 327
SlaI CTCGAG 1 cut(s) 327
SmlI CTYRAG 2 cut(s) 44, 327
SmoI CTYRAG 2 cut(s) 44, 327
Sse9I AATT 3 cut(s) 200, 220, 298
SsiI CCGC 2 cut(s) 13, 125
SspI AATATT 2 cut(s) 68, 214
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 1 cut(s) 311
TaqI TCGA 2 cut(s) 160, 328
TasI AATT 3 cut(s) 200, 220, 298
TauI GCSGC 2 cut(s) 15, 128
TfiI GAWTC 1 cut(s) 172
Tru1I TTAA 3 cut(s) 111, 297, 424
Tru9I TTAA 3 cut(s) 111, 297, 424
TscAI CASTG 3 cut(s) 22, 274, 316
TspDTI ATGAA 3 cut(s) 45, 288, 350
TspRI CASTG 3 cut(s) 22, 274, 316
XhoI CTCGAG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.