Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008812.1

Orthogroup ID

OG0006587

Physical Location & Seq

Genomic Coordinates Forward (+)

371 .. 6050

Gene Structure 5680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008812.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

atgcttgttaaagaaaggatccactcaaattctcttgcatcctcttttgaggccagtctttatgtttggaaggccactcttatgattgctgaatgtcatcgcaatattggcaattctcctgttgtggaggtctatggctcttttgtgatggatttgttcagtgatgaaagtgatcttgatctctctgttaatttcagcaagagtgtaggcgatcttcctcgagatatgaagatcaaaactcttcggaagtttgctaaaaagtttttgtctcttcaaagggcagggcatgttgctggtgtacagacgattgtgagtgctagggttcctataatcaagcttatagactgtggaaccggaattgagtgtgatttatcaattgagaacagggatggcattgtaaaatcccagattgtctacataatatctagaattgacggaaggtttcagaaactgagttttatgatgaaagcctgggcaaaagcacatgatatcaactgtcccaaagatcgaactctgagctcttttggcataatatctttggttgcttttcatctgcagactcgagatccgccaatattacctccattatctactttgtttgaagatggaactgatcctgcaactgtgatgaaaagagtagatacttatttggagtttggaaacagaaacaaagaatccgtggcagaccttttctttaccctgttagtcaaggtagcatcagctgaaatgctgtggcagaaaggtctatgtgcaagtctgtatgaaggatcgtggacatcaaaattatgggatcctcattataatgctataaatgttgaggatttcacagatccatctcaaaatgttttaagggcagtaggaacaagagaatttcaaaagatctataggtgtattcattcttctctcagtcacctgttagcattttcagacaaccagatggagggaaacaacttggtggatcttttgtttggcacgaagtcagtatacatcccgagcaaagctaagcatcctccactccttaatggtcaccagacaaagcggatgcgagtaagtagaggctgggaagaaaatcagccagaggaaggctggaaaggaaagcaaactcaaggttcaggaacagcacagcacgtggaagttagaggaggaagacaacaagctgatggcccagtaggaacgatgcaagtagatggtttgggaggagcacagcaatcccatgatgaagcaacttcaaacctaaatgttaaagatgaaactccagtagttcatactcaaactccgctggtcggcacattgtgcaattcaatttctccgcacactccgctagtttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTP_transf_2

Protein Analysis

443

Amino Acids

49.19

Weight (kDa)

7.23

Isoelectric Point (pI)

28.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45750 AT3G45750 AT3G45750 AT3G45750 AT3G45750 AT3G45760 AT3G45760
fragaria_vesca	FvH4_1g25680 FvH4_1g25680 FvH4_1g25680
prunus_persica	Prupe.4G282700_v2.0.a1 Prupe.4G282700_v2.0.a1 Prupe.4G282700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0124151
rosa_laevigata	RLG00000018787
rosa_multiflora	Rmu_sc0008812.1_g000001 Rmu_sc0031303.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120090
rosa_rugosa	Rorug02G0248900
rosa_samantha	Rh2AG307900 Rh2BG316900 Rh2CG294700 Rh2CG294800 Rh2DG331900 Rh2DG332000
rosa_wichuraiana	Rw2G024820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	801
AccI	GTMKAC	2 cut(s)	414, 984
AciI	CCGC	5 cut(s)	569, 1039, 1277, 1310, 1319
AclWI	GGATC	9 cut(s)	13, 26, 560, 608, 775, 785, 798, 824, 966
AcsI	RAATTY	2 cut(s)	28, 869
AcvI	CACGTG	1 cut(s)	1129
AdeI	CACNNNGTG	1 cut(s)	1293
AfaI	GTAC	1 cut(s)	300
AfiI	CCNNNNNNNGG	3 cut(s)	940, 1082, 1283
AgsI	TTSAA	5 cut(s)	275, 602, 875, 1230, 1302
AjnI	CCWGG	1 cut(s)	470
AluBI	AGCT	5 cut(s)	337, 519, 722, 1001, 1157
AluI	AGCT	5 cut(s)	337, 519, 722, 1001, 1157
Alw21I	GWGCWC	2 cut(s)	521, 1204
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	9 cut(s)	13, 26, 560, 608, 775, 785, 798, 824, 966
AlwNI	CAGNNNCTG	1 cut(s)	451
Ama87I	CYCGRG	3 cut(s)	219, 561, 991
AoxI	GGCC	3 cut(s)	51, 72, 1162
ApoI	RAATTY	2 cut(s)	28, 869
AspS9I	GGNCC	1 cut(s)	1163
AsuHPI	GGTGA	2 cut(s)	902, 1019
AvaI	CYCGRG	3 cut(s)	219, 561, 991
BamHI	GGATCC	2 cut(s)	18, 790
BanII	GRGCYC	1 cut(s)	521
BarI	GAAGNNNNNNTAC	6 cut(s)	198, 230, 883, 915, 968, 1000
BbrPI	CACGTG	1 cut(s)	1129
BbsI	GAAGAC	1 cut(s)	1153
Bbv12I	GWGCWC	2 cut(s)	521, 1204
BccI	CCATC	7 cut(s)	142, 383, 599, 841, 931, 1154, 1181
BciT130I	CCWGG	1 cut(s)	472
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	3 cut(s)	318, 426, 1322
BfmI	CTRYAG	2 cut(s)	554, 883
BglII	AGATCT	1 cut(s)	879
BlpI	GCTNAGC	1 cut(s)	1002
Bme1390I	CCNGG	1 cut(s)	472
BmeT110I	CYCGRG	3 cut(s)	219, 561, 991
BmgT120I	GGNCC	1 cut(s)	1163
BmiI	GGNNCC	4 cut(s)	20, 324, 352, 792
BmrFI	CCNGG	1 cut(s)	472
BmrI	ACTGGG	1 cut(s)	1160
BmsI	GCATC	5 cut(s)	47, 725, 1015, 1032, 1167
BmuI	ACTGGG	1 cut(s)	1160
BpiI	GAAGAC	1 cut(s)	1153
BpmI	CTGGAG	1 cut(s)	1239
Bpu1102I	GCTNAGC	1 cut(s)	1002
BpuEI	CTTGAG	1 cut(s)	1089
BsaAI	YACGTR	1 cut(s)	1129
BsaBI	GATNNNNATC	1 cut(s)	177
BsaJI	CCNNGG	2 cut(s)	471, 678
BsaWI	WCCGGW	1 cut(s)	353
BsaXI	ACNNNNNCTCC	2 cut(s)	1258, 1288
Bsc4I	CCNNNNNNNGG	3 cut(s)	940, 1082, 1283
Bse1I	ACTGG	3 cut(s)	54, 1166, 1256
Bse8I	GATNNNNATC	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	472
BseDI	CCNNGG	2 cut(s)	471, 678
BseGI	GGATG	5 cut(s)	38, 394, 987, 1006, 1047
BseJI	GATNNNNATC	1 cut(s)	177
BseLI	CCNNNNNNNGG	3 cut(s)	940, 1082, 1283
BseMII	CTCAG	3 cut(s)	443, 506, 919
BseNI	ACTGG	3 cut(s)	54, 1166, 1256
BseRI	GAGGAG	2 cut(s)	1155, 1212
BseYI	CCCAGC	1 cut(s)	1059
BshFI	GGCC	3 cut(s)	53, 74, 1164
BsiHKAI	GWGCWC	2 cut(s)	521, 1204
BsiHKCI	CYCGRG	3 cut(s)	219, 561, 991
BsiSI	CCGG	1 cut(s)	354
BslFI	GGGAC	1 cut(s)	483
BslI	CCNNNNNNNGG	3 cut(s)	940, 1082, 1283
BsmAI	GTCTC	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	483
BsnI	GGCC	3 cut(s)	53, 74, 1164
BsoBI	CYCGRG	3 cut(s)	219, 561, 991
Bsp1286I	GDGCHC	2 cut(s)	521, 1204
Bsp1407I	TGTACA	1 cut(s)	298
Bsp1720I	GCTNAGC	1 cut(s)	1002
BspACI	CCGC	5 cut(s)	569, 1039, 1277, 1310, 1319
BspANI	GGCC	3 cut(s)	53, 74, 1164
BspCNI	CTCAG	3 cut(s)	444, 507, 918
BspLI	GGNNCC	4 cut(s)	20, 324, 352, 792
BspMAI	CTGCAG	1 cut(s)	558
BspPI	GGATC	9 cut(s)	13, 26, 560, 608, 775, 785, 798, 824, 966
BsrGI	TGTACA	1 cut(s)	298
BsrI	ACTGG	3 cut(s)	54, 1166, 1256
BssECI	CCNNGG	2 cut(s)	471, 678
BssNAI	GTATAC	1 cut(s)	985
Bst1107I	GTATAC	1 cut(s)	985
Bst2UI	CCWGG	1 cut(s)	472
Bst4CI	ACNGT	3 cut(s)	347, 497, 625
Bst6I	CTCTTC	2 cut(s)	246, 276
BstAPI	GCANNNNNTGC	1 cut(s)	1293
BstAUI	TGTACA	1 cut(s)	298
BstBAI	YACGTR	1 cut(s)	1129
BstDEI	CTNAG	4 cut(s)	452, 515, 905, 1002
BstDSI	CCRYGG	1 cut(s)	678
BstEII	GGTNACC	1 cut(s)	1025
BstF5I	GGATG	5 cut(s)	38, 394, 987, 1006, 1047
BstMAI	GTCTC	1 cut(s)	273
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 525, 1293, 1318
BstNI	CCWGG	1 cut(s)	472
BstNSI	RCATGY	1 cut(s)	290
BstPI	GGTNACC	1 cut(s)	1025
BstSCI	CCNGG	1 cut(s)	470
BstSFI	CTRYAG	2 cut(s)	554, 883
BstV2I	GAAGAC	1 cut(s)	1153
BstX2I	RGATCY	6 cut(s)	18, 565, 790, 829, 879, 958
BstYI	RGATCY	6 cut(s)	18, 565, 790, 829, 879, 958
BstZ17I	GTATAC	1 cut(s)	985
BsuRI	GGCC	3 cut(s)	53, 74, 1164
BtgI	CCRYGG	1 cut(s)	678
BtgZI	GCGATG	1 cut(s)	83
BtsCI	GGATG	5 cut(s)	38, 394, 987, 1006, 1047
BtsIMutI	CAGTG	1 cut(s)	166
CaiI	CAGNNNCTG	1 cut(s)	451
Cfr13I	GGNCC	1 cut(s)	1163
Csp6I	GTAC	1 cut(s)	299
CviAII	CATG	3 cut(s)	287, 485, 1214
CviQI	GTAC	1 cut(s)	299
DdeI	CTNAG	4 cut(s)	452, 515, 905, 1002
DraIII	CACNNNGTG	1 cut(s)	1293
Eam1104I	CTCTTC	2 cut(s)	246, 276
EarI	CTCTTC	2 cut(s)	246, 276
EciI	GGCGGA	1 cut(s)	558
Ecl136II	GAGCTC	1 cut(s)	519
Eco24I	GRGCYC	1 cut(s)	521
Eco32I	GATATC	1 cut(s)	490
Eco53kI	GAGCTC	1 cut(s)	519
Eco72I	CACGTG	1 cut(s)	1129
Eco88I	CYCGRG	3 cut(s)	219, 561, 991
Eco91I	GGTNACC	1 cut(s)	1025
EcoICRI	GAGCTC	1 cut(s)	519
EcoO65I	GGTNACC	1 cut(s)	1025
EcoRII	CCWGG	1 cut(s)	470
EcoRV	GATATC	1 cut(s)	490
EcoT38I	GRGCYC	1 cut(s)	521
FaeI	CATG	3 cut(s)	290, 488, 1217
FaqI	GGGAC	1 cut(s)	483
FatI	CATG	3 cut(s)	286, 484, 1213
FblI	GTMKAC	2 cut(s)	414, 984
FokI	GGATG	5 cut(s)	25, 401, 974, 993, 1054
FriOI	GRGCYC	1 cut(s)	521
FspBI	CTAG	3 cut(s)	318, 426, 1322
GsaI	CCCAGC	1 cut(s)	1063
GsuI	CTGGAG	1 cut(s)	1239
HaeIII	GGCC	3 cut(s)	53, 74, 1164
HapII	CCGG	1 cut(s)	354
Hin1II	CATG	3 cut(s)	290, 488, 1217
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	2 cut(s)	559, 674
HpaII	CCGG	1 cut(s)	354
HphI	GGTGA	2 cut(s)	902, 1019
Hpy166II	GTNNAC	4 cut(s)	299, 415, 774, 985
Hpy188I	TCNGA	4 cut(s)	246, 447, 516, 928
Hpy188III	TCNNGA	6 cut(s)	176, 221, 426, 563, 991, 1113
Hpy8I	GTNNAC	4 cut(s)	299, 415, 774, 985
HpyAV	CCTTC	4 cut(s)	64, 432, 758, 1076
HpyCH4III	ACNGT	3 cut(s)	347, 497, 625
HpyCH4IV	ACGT	1 cut(s)	1128
HpyCH4V	TGCA	6 cut(s)	38, 556, 620, 752, 1180, 1296
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 525, 1293, 1318
HpyF3I	CTNAG	4 cut(s)	452, 515, 905, 1002
HpySE526I	ACGT	1 cut(s)	1128
Hsp92II	CATG	3 cut(s)	290, 488, 1217
LmnI	GCTCC	1 cut(s)	1199
LweI	GCATC	5 cut(s)	47, 725, 1015, 1032, 1167
MaeI	CTAG	3 cut(s)	318, 426, 1322
MaeII	ACGT	1 cut(s)	1128
MaeIII	GTNAC	2 cut(s)	908, 1025
MboII	GAAGA	8 cut(s)	206, 233, 241, 263, 614, 891, 1076, 1158
MfeI	CAATTG	1 cut(s)	375
MflI	RGATCY	6 cut(s)	18, 565, 790, 829, 879, 958
MhlI	GDGCHC	2 cut(s)	521, 1204
MlyI	GAGTC	1 cut(s)	553
MseI	TTAA	6 cut(s)	9, 189, 848, 1020, 1242, 1330
MslI	CAYNNNNRTG	2 cut(s)	80, 801
MspA1I	CMGCKG	2 cut(s)	722, 1279
MspI	CCGG	1 cut(s)	354
MspR9I	CCNGG	1 cut(s)	472
MunI	CAATTG	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	472
MwoI	GCNNNNNNNGC	4 cut(s)	108, 525, 1293, 1318
NlaIII	CATG	3 cut(s)	290, 488, 1217
NlaIV	GGNNCC	4 cut(s)	20, 324, 352, 792
NmuCI	GTSAC	2 cut(s)	908, 1025
NspI	RCATGY	1 cut(s)	290
PaeR7I	CTCGAG	2 cut(s)	219, 561
PfeI	GAWTC	1 cut(s)	674
PleI	GAGTC	1 cut(s)	553
PmaCI	CACGTG	1 cut(s)	1129
PmlI	CACGTG	1 cut(s)	1129
PpsI	GAGTC	1 cut(s)	553
Ppu21I	YACGTR	1 cut(s)	1129
PsiI	TTATAA	1 cut(s)	801
Psp124BI	GAGCTC	1 cut(s)	521
Psp6I	CCWGG	1 cut(s)	470
PspCI	CACGTG	1 cut(s)	1129
PspEI	GGTNACC	1 cut(s)	1025
PspFI	CCCAGC	1 cut(s)	1059
PspGI	CCWGG	1 cut(s)	470
PspN4I	GGNNCC	4 cut(s)	20, 324, 352, 792
PspPI	GGNCC	1 cut(s)	1163
PstI	CTGCAG	1 cut(s)	558
PstNI	CAGNNNCTG	1 cut(s)	451
PsuI	RGATCY	6 cut(s)	18, 565, 790, 829, 879, 958
PvuII	CAGCTG	1 cut(s)	722
RsaI	GTAC	1 cut(s)	300
RsaNI	GTAC	1 cut(s)	299
RseI	CAYNNNNRTG	2 cut(s)	80, 801
SacI	GAGCTC	1 cut(s)	521
SaqAI	TTAA	6 cut(s)	9, 189, 848, 1020, 1242, 1330
Sau96I	GGNCC	1 cut(s)	1163
SchI	GAGTC	1 cut(s)	553
ScrFI	CCNGG	1 cut(s)	472
SduI	GDGCHC	2 cut(s)	521, 1204
SfaNI	GCATC	5 cut(s)	47, 725, 1015, 1032, 1167
SfcI	CTRYAG	2 cut(s)	554, 883
Sfr274I	CTCGAG	2 cut(s)	219, 561
SlaI	CTCGAG	2 cut(s)	219, 561
SmiMI	CAYNNNNRTG	2 cut(s)	80, 801
SmlI	CTYRAG	3 cut(s)	219, 561, 1104
SmoI	CTYRAG	3 cut(s)	219, 561, 1104
SsiI	CCGC	5 cut(s)	569, 1039, 1277, 1310, 1319
SspI	AATATT	2 cut(s)	106, 576
SspMI	CTAG	3 cut(s)	318, 426, 1322
SstI	GAGCTC	1 cut(s)	521
StyD4I	CCNGG	1 cut(s)	470
TaaI	ACNGT	3 cut(s)	347, 497, 625
TaiI	ACGT	1 cut(s)	1131
TaqI	TCGA	3 cut(s)	220, 508, 562
TatI	WGTACW	1 cut(s)	298
TfiI	GAWTC	1 cut(s)	674
Tru1I	TTAA	6 cut(s)	9, 189, 848, 1020, 1242, 1330
Tru9I	TTAA	6 cut(s)	9, 189, 848, 1020, 1242, 1330
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	2 cut(s)	908, 1025
Tsp45I	GTSAC	2 cut(s)	908, 1025
TspGWI	ACGGA	2 cut(s)	450, 667
TspRI	CASTG	1 cut(s)	166
XapI	RAATTY	2 cut(s)	28, 869
XbaI	TCTAGA	1 cut(s)	425
XceI	RCATGY	1 cut(s)	290
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1083
XhoI	CTCGAG	2 cut(s)	219, 561
XmiI	GTMKAC	2 cut(s)	414, 984
XspI	CTAG	3 cut(s)	318, 426, 1322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.