AT3G45890

Vitamin B6 photo-protection and homoeostasis

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
16871578 .. 16874367
2790 bp
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UTR
Exon/CDS
Intron
AT3G45890.1

Sequence Viewer

Length: 1827 bp
ATGAGTTGTTCTTATCTACTTTCTGGTGACGCTTCCGTCGTCGCTTCACGGCGGTGGAGTGATGTTTCTTCCCGGCAGCGTTTATTTCTCCCACGGCAATCACTCCGGCAGCCATCGGGTTCTTCGTTTTCCCGATGCGTCCGATTAGTCGCTAATGTAAATGATCATTTCAGTAAACAATCACTCGCGACGAGAAATTGCTTGGCTTCAGTGTTTAGTGCAGACTTGGGTGGAAGTAACGGTAATAATGATAACGGAAATGGCGGCGGTGGCGGAGGAGACGGCGGCGGCGATAACTCTGATGATTCTTCTTTCGATTTGAGATACCTCTGCTTTCTTTTATTGGGCTTGTCTTGCTTCTTCCATTTCCGATTATCAGCTGCGTCCGCCATAGCTAAAGATCAAAATTCGGATAGTAATGGAGATGCTGTGAAAGAGACGGTTTGGGAAGTGAGAGGAAGTAAAAGGAAGAGACTAGTTCCCGATTTTGTCAAAGATGAGTTCGTCTCTGAAGAATCTGCTTTTGAATTATCATCTTCTCTAACTCCTGAGAATCTCCTAGCTCAATGTAGAAACCTTCTCACTCAATTCCTTCTTCCTGAAGGTTTTCCCAATAGTGTAACTTCTGATTACCTCGATTACTCTCTCTGGAGAGGTGTTCAAGGTATTGCTAGTCAAATCAGCGGCGTTCTTGCCACTCAGTCTTTGCTTTATGCAGTTGGGTTAGGTAAAGGAGCAATTCCTACAGCTGCAGCTATCAATTGGGTGCTTAAAGATGGAATTGGGTATCTTAGTAAGATAATGTTGTCGAAATACGGACGACATTTCGATGTTCATCCCAAAGGATGGAGGCTATTTGCTGATCTTCTTGAAAACGCTGCTTTTGGTATGGAGATGCTTACGCCAGTCTTCCCTCAGTTTTTCGTTATGATCGGTGCTGCTGCTGGTGCTGGTCGATCTGCTGCTGCATTGATTCAGGCTGCTACTAGAAGTTGCTTCAATGCTGGCTTTGCTTCTCAAAGGAACTTTGCTGAGGTAATTGCCAAGGGTGAAGCTCAAGGAATGGTGAGCAAGTCAGTGGGTATTCTGCTAGGAATAGTGGTTGCCAATTGCATAGGAACCTCTACAAGTCTTGCCCTTGCTGCATTTGGAGTTGTGACTACAATCCATATGTATACCAATCTCAAATCTTACCAGTGTATCCAGCTCCGGACTCTAAACCCATACCGTGCAAGTTTGGTTTTTAGTGAATATCTAATCAGCGGCCAAGCTCCTCTAATCAAGGAGGTCAACGATGAAGAACCGCTCTTCCCAACAGTTCGGTTTTCAAACATGAAATCTCCAGAAAAGCTGCAAGATTTTGTCTTATCATCAGAAGCAAAAGCAGCAGCCGCAGACATAGAGGAACGGCTTCAACTAGGGTCAAAGCTCAGCGATGTTATCCACAACAAGGAAGAAGCAATAGCACTGTTTGATCTATATCGCAATGAAGGCTACATCCTTACAGAACACAAAGGAAGATTCTGCGTGATGCTCAAGGAAAGCTCAACTCCACAAGACATGCTCAGGTCATTGTTTCAAGTGAACTACCTCTACTGGCTAGAGAAGAATGCTGGGATCGAACCCGCAAGCACTTACTCAGACTGCAAACCCGGTGGTCGCCTTCACATTTCTTTAGATTATGTGCGACGAGAGTTTGAACACGCCAAAGAAGACAGCGAATCAGTAGGTTGGGTCACTGAAGGACTGATAGCTAGACCTCTACCAACCAGAATCCGTCTAGGTCATGATCGTGAACTATTATTATCTTCTCCAAACAGCTCATAA

Protein Analysis

608

Amino Acids

66.38

Weight (kDa)

6.4

Isoelectric Point (pI)

41.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UVB_sens_prot PF04884 188 - 420 4.6e-80 Vitamin B6 photo-protection and homoeostasis domain
UVB_sens_C PF24160 470 - 540 6.6e-06 Root UVB sensitive protein, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 35
AccB7I CCANNNNNTGG 1 cut(s) 846
AccBSI CCGCTC 1 cut(s) 1306
AccI GTMKAC 1 cut(s) 1175
AccII CGCG 1 cut(s) 188
AccIII TCCGGA 1 cut(s) 1209
AclWI GGATC 1 cut(s) 1625
AcoI YGGCCR 1 cut(s) 1264
AcsI RAATTY 1 cut(s) 406
AcuI CTGAAG 4 cut(s) 192, 531, 621, 1761
AfiI CCNNNNNNNGG 2 cut(s) 846, 1450
AgsI TTSAA 8 cut(s) 527, 662, 872, 1000, 1329, 1415, 1580, 1700
AhlI ACTAGT 1 cut(s) 475
AleI CACNNNNGTG 1 cut(s) 52
AloI GAACNNNNNNTCC 2 cut(s) 1293, 1325
Alw26I GTCTC 4 cut(s) 273, 431, 466, 511
AlwI GGATC 1 cut(s) 1625
Aor13HI TCCGGA 1 cut(s) 1209
AoxI GGCC 1 cut(s) 1264
ApoI RAATTY 1 cut(s) 406
Asp700I GAANNNNTTC 2 cut(s) 606, 1410
AsuC2I CCSGG 2 cut(s) 73, 1653
AsuHPI GGTGA 3 cut(s) 38, 1061, 1078
BaeI ACNNNNGTAYC 2 cut(s) 1183, 1216
BbsI GAAGAC 2 cut(s) 901, 1719
BbvCI CCTCAGC 1 cut(s) 1032
BccI CCATC 3 cut(s) 121, 770, 840
BceAI ACGGC 4 cut(s) 65, 110, 298, 1424
BciVI GTATCC 1 cut(s) 1211
BclI TGATCA 1 cut(s) 163
BcnI CCSGG 2 cut(s) 73, 1653
BcoDI GTCTC 4 cut(s) 273, 431, 466, 511
BcuI ACTAGT 1 cut(s) 475
BfaI CTAG 9 cut(s) 476, 560, 672, 987, 1091, 1418, 1601, 1755, 1781
BfmI CTRYAG 2 cut(s) 744, 750
BfuI GTATCC 1 cut(s) 1211
BlpI GCTNAGC 1 cut(s) 1430
Bme1390I CCNGG 2 cut(s) 73, 1653
BmiI GGNNCC 1 cut(s) 1120
BmrFI CCNGG 2 cut(s) 73, 1653
BmsI GCATC 4 cut(s) 125, 415, 885, 1521
BpiI GAAGAC 2 cut(s) 901, 1719
BplI GAGNNNNNCTC 2 cut(s) 491, 523
BpmI CTGGAG 2 cut(s) 670, 1326
Bpu10I CCTNAGC 2 cut(s) 1032, 1565
Bpu1102I GCTNAGC 1 cut(s) 1430
BpuEI CTTGAG 2 cut(s) 1041, 1520
BpuMI CCSGG 2 cut(s) 73, 1653
BsaBI GATNNNNATC 2 cut(s) 834, 1479
BsaJI CCNNGG 2 cut(s) 92, 1044
BsaWI WCCGGW 1 cut(s) 1209
BsaXI ACNNNNNCTCC 2 cut(s) 414, 444
Bsc4I CCNNNNNNNGG 2 cut(s) 846, 1450
Bse1I ACTGG 3 cut(s) 905, 1195, 1601
Bse3DI GCAATG 1 cut(s) 1492
Bse8I GATNNNNATC 2 cut(s) 834, 1479
BseAI TCCGGA 1 cut(s) 1209
BseDI CCNNGG 2 cut(s) 92, 1044
BseGI GGATG 3 cut(s) 835, 851, 1497
BseJI GATNNNNATC 2 cut(s) 834, 1479
BseLI CCNNNNNNNGG 2 cut(s) 846, 1450
BseMI GCAATG 1 cut(s) 1492
BseMII CTCAG 7 cut(s) 540, 713, 929, 1023, 1444, 1579, 1653
BseNI ACTGG 3 cut(s) 905, 1195, 1601
BseRI GAGGAG 2 cut(s) 291, 1263
BseYI CCCAGC 1 cut(s) 1613
BsgI GTGCAG 1 cut(s) 240
Bsh1236I CGCG 1 cut(s) 188
BshFI GGCC 1 cut(s) 1266
BsiSI CCGG 4 cut(s) 73, 106, 1210, 1653
BslI CCNNNNNNNGG 2 cut(s) 846, 1450
BsmAI GTCTC 4 cut(s) 273, 431, 466, 511
BsmBI CGTCTC 3 cut(s) 273, 431, 511
BsmI GAATGC 1 cut(s) 1615
BsnI GGCC 1 cut(s) 1266
Bsp13I TCCGGA 1 cut(s) 1209
Bsp143I GATC 8 cut(s) 163, 400, 862, 930, 956, 1474, 1617, 1789
Bsp1720I GCTNAGC 1 cut(s) 1430
Bsp68I TCGCGA 1 cut(s) 188
BspANI GGCC 1 cut(s) 1266
BspCNI CTCAG 7 cut(s) 541, 712, 928, 1024, 1443, 1578, 1652
BspEI TCCGGA 1 cut(s) 1209
BspFNI CGCG 1 cut(s) 188
BspHI TCATGA 1 cut(s) 1786
BspLI GGNNCC 1 cut(s) 1120
BspMAI CTGCAG 1 cut(s) 754
BspPI GGATC 1 cut(s) 1625
BspQI GCTCTTC 1 cut(s) 1313
BsrBI CCGCTC 1 cut(s) 1306
BsrDI GCAATG 1 cut(s) 1492
BsrI ACTGG 3 cut(s) 905, 1195, 1601
BssECI CCNNGG 2 cut(s) 92, 1044
BssMI GATC 8 cut(s) 163, 400, 862, 930, 956, 1474, 1617, 1789
BssNAI GTATAC 1 cut(s) 1176
BssT1I CCWWGG 1 cut(s) 1044
Bst1107I GTATAC 1 cut(s) 1176
Bst4CI ACNGT 5 cut(s) 242, 442, 1229, 1318, 1470
Bst6I CTCTTC 2 cut(s) 464, 1313
BstC8I GCNNGC 2 cut(s) 1006, 1630
BstDEI CTNAG 8 cut(s) 549, 699, 791, 915, 1032, 1430, 1565, 1639
BstDSI CCRYGG 1 cut(s) 92
BstF5I GGATG 3 cut(s) 835, 851, 1497
BstFNI CGCG 1 cut(s) 188
BstKTI GATC 8 cut(s) 166, 403, 865, 933, 959, 1477, 1620, 1792
BstMAI GTCTC 4 cut(s) 273, 431, 466, 511
BstMBI GATC 8 cut(s) 163, 400, 862, 930, 956, 1474, 1617, 1789
BstMWI GCNNNNNNNGC 9 cut(s) 270, 354, 386, 947, 1010, 1142, 1385, 1391, 1491
BstNSI RCATGY 1 cut(s) 1564
BstSCI CCNGG 2 cut(s) 71, 1651
BstSFI CTRYAG 2 cut(s) 744, 750
BstUI CGCG 1 cut(s) 188
BstV2I GAAGAC 2 cut(s) 901, 1719
BstZ17I GTATAC 1 cut(s) 1176
BsuI GTATCC 1 cut(s) 1211
BsuRI GGCC 1 cut(s) 1266
BtgI CCRYGG 1 cut(s) 92
BtgZI GCGATG 1 cut(s) 1449
BtsCI GGATG 3 cut(s) 835, 851, 1497
BtsIMutI CAGTG 5 cut(s) 216, 1083, 1202, 1466, 1737
BtuMI TCGCGA 1 cut(s) 188
Cac8I GCNNGC 2 cut(s) 1006, 1630
CciI TCATGA 1 cut(s) 1786
CseI GACGC 3 cut(s) 38, 127, 372
CspCI CAANNNNNGTGG 2 cut(s) 1636, 1671
CviAII CATG 3 cut(s) 1333, 1561, 1787
DdeI CTNAG 8 cut(s) 549, 699, 791, 915, 1032, 1430, 1565, 1639
DpnI GATC 8 cut(s) 165, 402, 864, 932, 958, 1476, 1619, 1791
DpnII GATC 8 cut(s) 163, 400, 862, 930, 956, 1474, 1617, 1789
DrdI GACNNNNNNGTC 1 cut(s) 35
DseDI GACNNNNNNGTC 1 cut(s) 35
EaeI YGGCCR 1 cut(s) 1264
Eam1104I CTCTTC 2 cut(s) 464, 1313
EarI CTCTTC 2 cut(s) 464, 1313
EciI GGCGGA 2 cut(s) 288, 376
Eco130I CCWWGG 1 cut(s) 1044
Eco57I CTGAAG 4 cut(s) 192, 531, 621, 1761
EcoT14I CCWWGG 1 cut(s) 1044
ErhI CCWWGG 1 cut(s) 1044
Esp3I CGTCTC 3 cut(s) 273, 431, 511
FaeI CATG 3 cut(s) 1336, 1564, 1790
FatI CATG 3 cut(s) 1332, 1560, 1786
FauI CCCGC 1 cut(s) 1633
FauNDI CATATG 1 cut(s) 1170
FbaI TGATCA 1 cut(s) 163
FblI GTMKAC 1 cut(s) 1175
FokI GGATG 3 cut(s) 822, 858, 1484
FspBI CTAG 9 cut(s) 476, 560, 672, 987, 1091, 1418, 1601, 1755, 1781
GsaI CCCAGC 1 cut(s) 1617
GsuI CTGGAG 2 cut(s) 670, 1326
HaeIII GGCC 1 cut(s) 1266
HapII CCGG 4 cut(s) 73, 106, 1210, 1653
HgaI GACGC 3 cut(s) 38, 127, 372
Hin1II CATG 3 cut(s) 1336, 1564, 1790
HincII GTYRAC 1 cut(s) 1291
HindII GTYRAC 1 cut(s) 1291
HinfI GANTC 8 cut(s) 305, 515, 553, 973, 1213, 1521, 1721, 1773
HpaII CCGG 4 cut(s) 73, 106, 1210, 1653
HphI GGTGA 3 cut(s) 38, 1061, 1078
Hpy166II GTNNAC 5 cut(s) 176, 1176, 1291, 1585, 1796
Hpy188I TCNGA 8 cut(s) 143, 301, 371, 412, 511, 628, 1375, 1642
Hpy8I GTNNAC 5 cut(s) 176, 1176, 1291, 1585, 1796
Hpy99I CGWCG 4 cut(s) 41, 44, 193, 1692
HpyAV CCTTC 6 cut(s) 587, 596, 602, 1484, 1673, 1736
HpyCH4III ACNGT 5 cut(s) 242, 442, 1229, 1318, 1470
HpyCH4V TGCA 9 cut(s) 221, 716, 752, 968, 1113, 1145, 1232, 1354, 1647
HpyF10VI GCNNNNNNNGC 9 cut(s) 270, 354, 386, 947, 1010, 1142, 1385, 1391, 1491
HpyF3I CTNAG 8 cut(s) 549, 699, 791, 915, 1032, 1430, 1565, 1639
Hsp92II CATG 3 cut(s) 1336, 1564, 1790
Kpn2I TCCGGA 1 cut(s) 1209
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 8 cut(s) 163, 400, 862, 930, 956, 1474, 1617, 1789
LguI GCTCTTC 1 cut(s) 1313
LmnI GCTCC 3 cut(s) 734, 1212, 1276
LweI GCATC 4 cut(s) 125, 415, 885, 1521
MaeI CTAG 9 cut(s) 476, 560, 672, 987, 1091, 1418, 1601, 1755, 1781
MaeIII GTNAC 5 cut(s) 26, 236, 619, 1156, 1735
MalI GATC 8 cut(s) 165, 402, 864, 932, 958, 1476, 1619, 1791
MbiI CCGCTC 1 cut(s) 1306
MboI GATC 8 cut(s) 163, 400, 862, 930, 956, 1474, 1617, 1789
MfeI CAATTG 2 cut(s) 760, 1108
MluCI AATT 9 cut(s) 196, 406, 527, 587, 738, 760, 780, 1038, 1108
MlyI GAGTC 1 cut(s) 1207
MroI TCCGGA 1 cut(s) 1209
MroXI GAANNNNTTC 2 cut(s) 606, 1410
MseI TTAA 1 cut(s) 771
MslI CAYNNNNRTG 3 cut(s) 52, 828, 1791
MspA1I CMGCKG 4 cut(s) 380, 684, 749, 1263
MspI CCGG 4 cut(s) 73, 106, 1210, 1653
MspR9I CCNGG 2 cut(s) 73, 1653
MunI CAATTG 2 cut(s) 760, 1108
Mva1269I GAATGC 1 cut(s) 1615
MvnI CGCG 1 cut(s) 188
MwoI GCNNNNNNNGC 9 cut(s) 270, 354, 386, 947, 1010, 1142, 1385, 1391, 1491
NciI CCSGG 2 cut(s) 73, 1653
NdeI CATATG 1 cut(s) 1170
NdeII GATC 8 cut(s) 163, 400, 862, 930, 956, 1474, 1617, 1789
NlaIII CATG 3 cut(s) 1336, 1564, 1790
NlaIV GGNNCC 1 cut(s) 1120
NmuCI GTSAC 3 cut(s) 26, 1156, 1735
NruI TCGCGA 1 cut(s) 188
NspI RCATGY 1 cut(s) 1564
OliI CACNNNNGTG 1 cut(s) 52
PagI TCATGA 1 cut(s) 1786
PciSI GCTCTTC 1 cut(s) 1313
PcsI WCGNNNNNNNCGW 3 cut(s) 36, 122, 288
PctI GAATGC 1 cut(s) 1615
PdmI GAANNNNTTC 2 cut(s) 606, 1410
PfeI GAWTC 7 cut(s) 305, 515, 553, 973, 1521, 1721, 1773
PflMI CCANNNNNTGG 1 cut(s) 846
PleI GAGTC 1 cut(s) 1207
PpsI GAGTC 1 cut(s) 1207
PspFI CCCAGC 1 cut(s) 1613
PspN4I GGNNCC 1 cut(s) 1120
PsrI GAACNNNNNNTAC 2 cut(s) 1577, 1609
PstI CTGCAG 1 cut(s) 754
PvuII CAGCTG 2 cut(s) 380, 749
RruI TCGCGA 1 cut(s) 188
RseI CAYNNNNRTG 3 cut(s) 52, 828, 1791
SapI GCTCTTC 1 cut(s) 1313
SaqAI TTAA 1 cut(s) 771
Sau3AI GATC 8 cut(s) 163, 400, 862, 930, 956, 1474, 1617, 1789
SchI GAGTC 1 cut(s) 1207
ScrFI CCNGG 2 cut(s) 73, 1653
SfaNI GCATC 4 cut(s) 125, 415, 885, 1521
SfcI CTRYAG 2 cut(s) 744, 750
SmiMI CAYNNNNRTG 3 cut(s) 52, 828, 1791
SmlI CTYRAG 2 cut(s) 1056, 1535
SmoI CTYRAG 2 cut(s) 1056, 1535
SpeI ACTAGT 1 cut(s) 475
Sse9I AATT 9 cut(s) 196, 406, 527, 587, 738, 760, 780, 1038, 1108
SspMI CTAG 9 cut(s) 476, 560, 672, 987, 1091, 1418, 1601, 1755, 1781
StyD4I CCNGG 2 cut(s) 71, 1651
StyI CCWWGG 1 cut(s) 1044
TaaI ACNGT 5 cut(s) 242, 442, 1229, 1318, 1470
TaqI TCGA 6 cut(s) 315, 636, 809, 828, 955, 1620
TasI AATT 9 cut(s) 196, 406, 527, 587, 738, 760, 780, 1038, 1108
TauI GCSGC 6 cut(s) 267, 288, 291, 687, 1266, 1394
TfiI GAWTC 7 cut(s) 305, 515, 553, 973, 1521, 1721, 1773
Tru1I TTAA 1 cut(s) 771
Tru9I TTAA 1 cut(s) 771
TscAI CASTG 5 cut(s) 216, 1083, 1202, 1473, 1744
TseFI GTSAC 3 cut(s) 26, 1156, 1735
Tsp45I GTSAC 3 cut(s) 26, 1156, 1735
TspDTI ATGAA 4 cut(s) 824, 1311, 1349, 1503
TspGWI ACGGA 4 cut(s) 25, 270, 831, 1766
TspRI CASTG 5 cut(s) 216, 1083, 1202, 1473, 1744
Van91I CCANNNNNTGG 1 cut(s) 846
XapI RAATTY 1 cut(s) 406
XceI RCATGY 1 cut(s) 1564
XmiI GTMKAC 1 cut(s) 1175
XmnI GAANNNNTTC 2 cut(s) 606, 1410
XspI CTAG 9 cut(s) 476, 560, 672, 987, 1091, 1418, 1601, 1755, 1781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.