Prupe.1G352800_v2.0.a1

UPF0420 protein C16orf58 homolog

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
32803445 .. 32809476
6032 bp
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UTR
Exon/CDS
Intron
Prupe.1G352800.1

Sequence Viewer

Length: 1815 bp
ATGCGGTGCGCGTGCAAGTCCTTGTTCATCCAAGGAAGCATTACTCCACCTCTACCACCTAGTTACATCCGTGATAGAAATTCTATTGCGCCACCGTCATCTGCTCTAAAATCCAATCCAGTGTTGTTGCCTTCGCTTAGTCTCAAGGCCTCACAATCTCACGCTCATGGACTGCCTTGGAAACGGTTTAATGCATGTACTATCCTGCTGGACAATGGCGGCTGTGACTCTGGCAACAAAAACGGCGGCGGCGGCGGAGGTGGCGGCTGGAATAATCCATTTGAGTCATCCTCATGGTGGTGGCATGACGAAGGTAGTTCCTTTTCGGGTTCTTCTGGGCATCACCCGTTTATCTTCTTATCCTTCTTCTTCTGCTCTGTGGCGTGTTGCTTCTGCCACCTCCGATTGGCTTATGCGCTGGCATCATCAGAGGAGTGTGAGCCTGTGTGGGAAGTGAGGGGAGGCAACTGGACCAAGCTTATTCCTGATTTTGTTAAGGATGCCTTTGTTGTTGCTCAGGAAGTTGGTTTTGGTACATTAAGTGTTGGGAATCTGTGGTTACAATGCAAACATCTGCTTACGCGATTGATGCTTCCAGAAGGCTATCCCCACTGCGTTACCAGTGATTACTTGGACTACTCTCTATGGAGAGGAGTTCAGGGGGTCGCCAGCCAAATTAGTGGTGTCCTTGCCACTCAGGCATTGCTTTACGCTGTTGGATTGGGGAAAGGGGCTATTCCGGCCGCTGCTGCTGTCAATTGGGTCCTTAAGGATGGAATTGGATACCTCAGCAAAATTATGCTCTCAAAATATGGAAGGCATTTTGATGTCAATCCAAAAGGGTGGAGGTTGTTTGCTGATCTTCTTGAAAATGCTGCCTTTGGAATGGAAATACTCACTCCTGCATTTCCCCATCTTTTTCTTTTAATTGGTGCTGCTGCAGGTGCAGGGCGTTCAGCTGCTGCACTTATTCAGGCTGCTACCAGGAGTTGTTTCTATGCTGGTTTTGCTGCTCAAAGAAACTTTGCTGAGGTGATTGCTAAGGGTGAAGCTCAGGGAATGGTGAGCAAGTCTGTTGGTATCATGCTTGGTATAGCATTGGCCAACCACATAGGCTCTTCTACGTTTCTTGGCCTTGCTTCTTTTAGCATTGTCACTTGGATCCACATGTTCTGCAATCTGAAATCATATCAATCCATTCAAATAAGGACTTTAAATCCTTATCGTGCAAGCTTGGTTTTTAGCGAATATCTTCTTAGCGGCCAAGCACCTTCTGTCAAAGAGGTCAATGAGGAGGAACCGCTTTTTCCAGCTGTACCATTTCTTAACTTGAAGCCTGCAAACCAAGTACAATCAACAGTATTATCTTCGGAAGCGAAGGATGCTGCGGTTGAAATCGAGCATAGGCTGCAGTTGGGATCCAAGCTCAGTGATCTAGTCAACAGCAAGGAGGATGTGCTTGCACTGCTCAGTCTATATAAGGATGAAGGCTATATTTTTACTGAGCACAAGGGAAGATTCTGCGTAGTGCTTAAAGAAACATCTTCTCTACAAGACATGCTGAGAGCATTGTTCCATGTCAATTATCTGTATTGGTTGGAGAAAAATGCAGGATATGAAGCAAGAGGCACTTCCGCTGACTGCAAACCAGGAGGAAGGCTGCAAATATCTCTAGAATATGTGCAGAGGGAATTCAACCATGTCAAAAACGATGGAGAATCAATGGGTTGGGTTACAGATGGGCTTATTGCAAGACCTTTACCTAATAGAGTTCGTCTAGGTTATGTGGCCGTACCAGATGGGCTTATTCCATGA

Protein Analysis

605

Amino Acids

65.78

Weight (kDa)

7.86

Isoelectric Point (pI)

39.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 932
Acc36I ACCTGC 1 cut(s) 932
AccII CGCG 2 cut(s) 11, 583
AclWI GGATC 4 cut(s) 1156, 1169, 1413, 1426
AcoI YGGCCR 4 cut(s) 741, 1101, 1261, 1788
AcsI RAATTY 2 cut(s) 79, 1691
AfaI GTAC 5 cut(s) 199, 535, 1317, 1350, 1794
AfiI CCNNNNNNNGG 2 cut(s) 297, 406
AflII CTTAAG 1 cut(s) 767
AflIII ACRYGT 1 cut(s) 1167
AgsI TTSAA 5 cut(s) 869, 1202, 1333, 1394, 1696
AjnI CCWGG 2 cut(s) 983, 1648
AjuI GAANNNNNNNTTGG 2 cut(s) 513, 545
AluBI AGCT 6 cut(s) 478, 959, 1052, 1233, 1313, 1426
AluI AGCT 6 cut(s) 478, 959, 1052, 1233, 1313, 1426
Alw21I GWGCWC 1 cut(s) 1509
Alw26I GTCTC 1 cut(s) 146
AlwI GGATC 4 cut(s) 1156, 1169, 1413, 1426
AlwNI CAGNNNCTG 1 cut(s) 962
AoxI GGCC 6 cut(s) 147, 741, 1101, 1132, 1261, 1788
ApoI RAATTY 2 cut(s) 79, 1691
Asp700I GAANNNNTTC 1 cut(s) 1251
AspLEI GCGC 3 cut(s) 11, 91, 418
AspS9I GGNCC 2 cut(s) 471, 763
AsuHPI GGTGA 4 cut(s) 335, 1045, 1058, 1075
AvaII GGWCC 2 cut(s) 471, 763
BalI TGGCCA 1 cut(s) 1103
BamHI GGATCC 2 cut(s) 1161, 1418
Bbv12I GWGCWC 1 cut(s) 1509
BbvCI CCTCAGC 2 cut(s) 788, 1029
BccI CCATC 5 cut(s) 767, 921, 1706, 1733, 1793
BceAI ACGGC 2 cut(s) 259, 1775
BciT130I CCWGG 2 cut(s) 985, 1650
BciVI GTATCC 1 cut(s) 776
BcoDI GTCTC 1 cut(s) 146
BfaI CTAG 4 cut(s) 60, 1436, 1673, 1778
BfmI CTRYAG 2 cut(s) 939, 1409
BfrI CTTAAG 1 cut(s) 767
BfuAI ACCTGC 1 cut(s) 932
BfuI GTATCC 1 cut(s) 776
BglI GCCNNNNNGGC 1 cut(s) 698
Bme1390I CCNGG 2 cut(s) 985, 1650
Bme18I GGWCC 2 cut(s) 471, 763
BmgT120I GGNCC 2 cut(s) 471, 763
BmiI GGNNCC 4 cut(s) 764, 1163, 1299, 1420
BmrFI CCNGG 2 cut(s) 985, 1650
BmsI GCATC 5 cut(s) 349, 431, 490, 579, 1372
BplI GAGNNNNNCTC 2 cut(s) 275, 307
Bpu10I CCTNAGC 5 cut(s) 516, 788, 1029, 1041, 1053
BpuEI CTTGAG 1 cut(s) 128
BsaBI GATNNNNATC 1 cut(s) 831
BsaJI CCNNGG 2 cut(s) 31, 176
Bsc4I CCNNNNNNNGG 2 cut(s) 297, 406
Bse1I ACTGG 3 cut(s) 119, 473, 621
Bse3DI GCAATG 1 cut(s) 701
Bse8I GATNNNNATC 1 cut(s) 831
BseBI CCWGG 2 cut(s) 985, 1650
BseDI CCNNGG 2 cut(s) 31, 176
BseGI GGATG 8 cut(s) 27, 66, 287, 505, 778, 1387, 1459, 1489
BseJI GATNNNNATC 1 cut(s) 831
BseLI CCNNNNNNNGG 2 cut(s) 297, 406
BseMI GCAATG 1 cut(s) 701
BseMII CTCAG 9 cut(s) 530, 710, 802, 1020, 1067, 1441, 1483, 1494, 1553
BseNI ACTGG 3 cut(s) 119, 473, 621
BseRI GAGGAG 3 cut(s) 446, 666, 1307
BseX3I CGGCCG 1 cut(s) 741
BsgI GTGCAG 3 cut(s) 948, 966, 1703
Bsh1236I CGCG 2 cut(s) 11, 583
Bsh1285I CGRYCG 1 cut(s) 744
BshFI GGCC 6 cut(s) 149, 743, 1103, 1134, 1263, 1790
BsiEI CGRYCG 1 cut(s) 744
BsiHKAI GWGCWC 1 cut(s) 1509
BsiSI CCGG 1 cut(s) 740
BslI CCNNNNNNNGG 2 cut(s) 297, 406
BsmAI GTCTC 1 cut(s) 146
BsnI GGCC 6 cut(s) 149, 743, 1103, 1134, 1263, 1790
Bsp1286I GDGCHC 1 cut(s) 1509
Bsp143I GATC 4 cut(s) 859, 1161, 1418, 1432
BspANI GGCC 6 cut(s) 149, 743, 1103, 1134, 1263, 1790
BspCNI CTCAG 9 cut(s) 529, 709, 801, 1021, 1066, 1440, 1482, 1495, 1554
BspFNI CGCG 2 cut(s) 11, 583
BspLI GGNNCC 4 cut(s) 764, 1163, 1299, 1420
BspMAI CTGCAG 2 cut(s) 943, 1413
BspMI ACCTGC 1 cut(s) 932
BspPI GGATC 4 cut(s) 1156, 1169, 1413, 1426
BspQI GCTCTTC 1 cut(s) 1123
BspTI CTTAAG 1 cut(s) 767
BsrDI GCAATG 1 cut(s) 701
BsrI ACTGG 3 cut(s) 119, 473, 621
BssECI CCNNGG 2 cut(s) 31, 176
BssMI GATC 4 cut(s) 859, 1161, 1418, 1432
BssT1I CCWWGG 2 cut(s) 31, 176
Bst2UI CCWGG 2 cut(s) 985, 1650
Bst4CI ACNGT 3 cut(s) 96, 186, 1360
Bst6I CTCTTC 1 cut(s) 1123
BstAFI CTTAAG 1 cut(s) 767
BstAPI GCANNNNNTGC 1 cut(s) 1408
BstC8I GCNNGC 6 cut(s) 13, 420, 670, 1231, 1338, 1461
BstF5I GGATG 8 cut(s) 27, 66, 287, 505, 778, 1387, 1459, 1489
BstFNI CGCG 2 cut(s) 11, 583
BstHHI GCGC 3 cut(s) 11, 91, 418
BstKTI GATC 4 cut(s) 862, 1164, 1421, 1435
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 4 cut(s) 859, 1161, 1418, 1432
BstMCI CGRYCG 1 cut(s) 744
BstNI CCWGG 2 cut(s) 985, 1650
BstNSI RCATGY 3 cut(s) 198, 1171, 1561
BstSCI CCNGG 2 cut(s) 983, 1648
BstSFI CTRYAG 2 cut(s) 939, 1409
BstUI CGCG 2 cut(s) 11, 583
BstX2I RGATCY 2 cut(s) 1161, 1418
BstXI CCANNNNNNTGG 2 cut(s) 680, 843
BstYI RGATCY 2 cut(s) 1161, 1418
BstZI CGGCCG 1 cut(s) 741
BsuI GTATCC 1 cut(s) 776
BsuRI GGCC 6 cut(s) 149, 743, 1103, 1134, 1263, 1790
BtsCI GGATG 8 cut(s) 27, 66, 287, 505, 778, 1387, 1459, 1489
BtsI GCAGTG 2 cut(s) 610, 1463
BtsIMutI CAGTG 5 cut(s) 126, 610, 628, 1435, 1463
BveI ACCTGC 1 cut(s) 932
Cac8I GCNNGC 6 cut(s) 13, 420, 670, 1231, 1338, 1461
CaiI CAGNNNCTG 1 cut(s) 962
CfoI GCGC 3 cut(s) 11, 91, 418
Cfr13I GGNCC 2 cut(s) 471, 763
Csp6I GTAC 5 cut(s) 198, 534, 1316, 1349, 1793
CviQI GTAC 5 cut(s) 198, 534, 1316, 1349, 1793
DpnI GATC 4 cut(s) 861, 1163, 1420, 1434
DpnII GATC 4 cut(s) 859, 1161, 1418, 1432
DraI TTTAAA 1 cut(s) 1215
EaeI YGGCCR 4 cut(s) 741, 1101, 1261, 1788
EagI CGGCCG 1 cut(s) 741
Eam1104I CTCTTC 1 cut(s) 1123
EarI CTCTTC 1 cut(s) 1123
EciI GGCGGA 1 cut(s) 270
EclXI CGGCCG 1 cut(s) 741
Eco130I CCWWGG 2 cut(s) 31, 176
Eco147I AGGCCT 1 cut(s) 149
Eco47I GGWCC 2 cut(s) 471, 763
Eco52I CGGCCG 1 cut(s) 741
EcoO109I RGGNCCY 1 cut(s) 763
EcoRI GAATTC 1 cut(s) 1691
EcoRII CCWGG 2 cut(s) 983, 1648
EcoT14I CCWWGG 2 cut(s) 31, 176
EcoT22I ATGCAT 1 cut(s) 196
ErhI CCWWGG 2 cut(s) 31, 176
FalI AAGNNNNNCTT 4 cut(s) 488, 520, 1615, 1647
FokI GGATG 8 cut(s) 14, 53, 274, 512, 785, 1394, 1466, 1496
FspBI CTAG 4 cut(s) 60, 1436, 1673, 1778
GlaI GCGC 3 cut(s) 10, 90, 417
HaeIII GGCC 6 cut(s) 149, 743, 1103, 1134, 1263, 1790
HapII CCGG 1 cut(s) 740
HhaI GCGC 3 cut(s) 11, 91, 418
Hin6I GCGC 3 cut(s) 9, 89, 416
HinP1I GCGC 3 cut(s) 9, 89, 416
HincII GTYRAC 1 cut(s) 1441
HindII GTYRAC 1 cut(s) 1441
HindIII AAGCTT 2 cut(s) 476, 1231
HinfI GANTC 5 cut(s) 227, 284, 550, 1518, 1718
HpaII CCGG 1 cut(s) 740
HphI GGTGA 4 cut(s) 335, 1045, 1058, 1075
Hpy166II GTNNAC 1 cut(s) 1441
Hpy188I TCNGA 4 cut(s) 404, 430, 1182, 1372
Hpy188III TCNNGA 5 cut(s) 485, 518, 596, 866, 1673
Hpy8I GTNNAC 1 cut(s) 1441
HpyAV CCTTC 9 cut(s) 141, 305, 373, 593, 810, 1281, 1372, 1481, 1650
HpyCH4III ACNGT 3 cut(s) 96, 186, 1360
HpyCH4IV ACGT 1 cut(s) 1124
HpySE526I ACGT 1 cut(s) 1124
HspAI GCGC 3 cut(s) 9, 89, 416
Kzo9I GATC 4 cut(s) 859, 1161, 1418, 1432
LguI GCTCTTC 1 cut(s) 1123
LweI GCATC 5 cut(s) 349, 431, 490, 579, 1372
MaeI CTAG 4 cut(s) 60, 1436, 1673, 1778
MaeII ACGT 1 cut(s) 1124
MaeIII GTNAC 6 cut(s) 62, 224, 558, 616, 1153, 1732
MalI GATC 4 cut(s) 861, 1163, 1420, 1434
MboI GATC 4 cut(s) 859, 1161, 1418, 1432
MfeI CAATTG 1 cut(s) 757
MflI RGATCY 2 cut(s) 1161, 1418
MhlI GDGCHC 1 cut(s) 1509
MlsI TGGCCA 1 cut(s) 1103
MluCI AATT 8 cut(s) 79, 675, 757, 777, 795, 927, 1582, 1691
MluNI TGGCCA 1 cut(s) 1103
MlyI GAGTC 2 cut(s) 221, 293
MmeI TCCRAC 2 cut(s) 697, 1578
Mox20I TGGCCA 1 cut(s) 1103
Mph1103I ATGCAT 1 cut(s) 196
MroXI GAANNNNTTC 1 cut(s) 1251
MscI TGGCCA 1 cut(s) 1103
MseI TTAA 8 cut(s) 189, 495, 539, 768, 926, 1214, 1326, 1533
MslI CAYNNNNRTG 4 cut(s) 165, 292, 298, 825
Msp20I TGGCCA 1 cut(s) 1103
MspA1I CMGCKG 4 cut(s) 746, 959, 1313, 1637
MspCI CTTAAG 1 cut(s) 767
MspI CCGG 1 cut(s) 740
MspR9I CCNGG 2 cut(s) 985, 1650
MunI CAATTG 1 cut(s) 757
MvaI CCWGG 2 cut(s) 985, 1650
MvnI CGCG 2 cut(s) 11, 583
NdeII GATC 4 cut(s) 859, 1161, 1418, 1432
NlaIV GGNNCC 4 cut(s) 764, 1163, 1299, 1420
NmuCI GTSAC 2 cut(s) 224, 1153
NsiI ATGCAT 1 cut(s) 196
NspI RCATGY 3 cut(s) 198, 1171, 1561
PaqCI CACCTGC 1 cut(s) 932
PceI AGGCCT 1 cut(s) 149
PciI ACATGT 1 cut(s) 1167
PciSI GCTCTTC 1 cut(s) 1123
PdmI GAANNNNTTC 1 cut(s) 1251
PfeI GAWTC 3 cut(s) 550, 1518, 1718
PleI GAGTC 2 cut(s) 221, 292
PpsI GAGTC 2 cut(s) 221, 292
PpuMI RGGWCCY 1 cut(s) 763
PscI ACATGT 1 cut(s) 1167
Psp5II RGGWCCY 1 cut(s) 763
Psp6I CCWGG 2 cut(s) 983, 1648
PspGI CCWGG 2 cut(s) 983, 1648
PspN4I GGNNCC 4 cut(s) 764, 1163, 1299, 1420
PspPI GGNCC 2 cut(s) 471, 763
PspPPI RGGWCCY 1 cut(s) 763
PstI CTGCAG 2 cut(s) 943, 1413
PstNI CAGNNNCTG 1 cut(s) 962
PsuI RGATCY 2 cut(s) 1161, 1418
PvuII CAGCTG 2 cut(s) 959, 1313
RsaI GTAC 5 cut(s) 199, 535, 1317, 1350, 1794
RsaNI GTAC 5 cut(s) 198, 534, 1316, 1349, 1793
RseI CAYNNNNRTG 4 cut(s) 165, 292, 298, 825
SapI GCTCTTC 1 cut(s) 1123
SaqAI TTAA 8 cut(s) 189, 495, 539, 768, 926, 1214, 1326, 1533
Sau3AI GATC 4 cut(s) 859, 1161, 1418, 1432
Sau96I GGNCC 2 cut(s) 471, 763
SchI GAGTC 2 cut(s) 221, 293
ScrFI CCNGG 2 cut(s) 985, 1650
SduI GDGCHC 1 cut(s) 1509
SfaNI GCATC 5 cut(s) 349, 431, 490, 579, 1372
SfcI CTRYAG 2 cut(s) 939, 1409
SinI GGWCC 2 cut(s) 471, 763
SmiMI CAYNNNNRTG 4 cut(s) 165, 292, 298, 825
SmlI CTYRAG 2 cut(s) 143, 767
SmoI CTYRAG 2 cut(s) 143, 767
Sse9I AATT 8 cut(s) 79, 675, 757, 777, 795, 927, 1582, 1691
SseBI AGGCCT 1 cut(s) 149
SspMI CTAG 4 cut(s) 60, 1436, 1673, 1778
StuI AGGCCT 1 cut(s) 149
StyD4I CCNGG 2 cut(s) 983, 1648
StyI CCWWGG 2 cut(s) 31, 176
TaaI ACNGT 3 cut(s) 96, 186, 1360
TaiI ACGT 1 cut(s) 1127
TaqI TCGA 1 cut(s) 1398
TasI AATT 8 cut(s) 79, 675, 757, 777, 795, 927, 1582, 1691
TatI WGTACW 2 cut(s) 197, 1348
TauI GCSGC 7 cut(s) 222, 249, 252, 255, 267, 746, 1263
TfiI GAWTC 3 cut(s) 550, 1518, 1718
Tru1I TTAA 8 cut(s) 189, 495, 539, 768, 926, 1214, 1326, 1533
Tru9I TTAA 8 cut(s) 189, 495, 539, 768, 926, 1214, 1326, 1533
TscAI CASTG 5 cut(s) 126, 617, 628, 1435, 1470
TseFI GTSAC 2 cut(s) 224, 1153
Tsp45I GTSAC 2 cut(s) 224, 1153
TspDTI ATGAA 3 cut(s) 16, 1500, 1632
TspGWI ACGGA 1 cut(s) 59
TspRI CASTG 5 cut(s) 126, 617, 628, 1435, 1470
Vha464I CTTAAG 1 cut(s) 767
VpaK11BI GGWCC 2 cut(s) 471, 763
XapI RAATTY 2 cut(s) 79, 1691
XbaI TCTAGA 1 cut(s) 1672
XceI RCATGY 3 cut(s) 198, 1171, 1561
XcmI CCANNNNNNNNNTGG 1 cut(s) 628
XmnI GAANNNNTTC 1 cut(s) 1251
XspI CTAG 4 cut(s) 60, 1436, 1673, 1778
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.