RchiOBHm_Chr6g0304461

UPF0420 protein C16orf58 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0005828
Physical Location & Seq
Forward (+)
63753690 .. 63754846
1157 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27356

Sequence Viewer

Length: 744 bp
ATGGGTTGCGCTTCCAAGTCCTTGTTCACCCAAGGAAGCACTATCCATTTCCCACCTCCACCGCGTCCCTACGCCGCCGCGCCATGCTCCTCTCCTCTAAAATCCACTCCACTCTTCTCTTTCACTTCACCGCCACAGTTTCGCGCTCACCTCCTGCCGCCTTTAACACATTTACTCACCGCACCTGCTTTCCTGCCGGCCAGCGGCGGCTCCGACGCCGGAGACAACAACAATGCCGGCGGCGGCGGCGGTTGGAATAATCCATTCGACTCATCATCCTCATGGTGGTGGCATGACGACAACGGTGGTGGATCTCATAACCTCATTTTGTTCTCGTCTATATTGTTGGCCTCCGTGGCGTGTTGCGTGTGCCAGCTCAGGCTGGCGTATGCCCTAGCGTCGGAGGAGGAGGATGTTGAGTCTGTGTGGGAAGTGAAGGGAGGCAAGTGGACAAAGCTCGTTCCTGAATTTGTGAGGGACGGCTTTGTTGCTGCCAATGGCGGTGGCTTGGCTTCAATAAGCTTTGGGAGTCTTTGGCTGCAATGCAAGAATCTGTTTGTGCAATTGATGCTTCCAGAAGGCTTTCCTCATAGTGTTACTAGTGATTATCTGGACTACTCTCTCTGGAGAGCAGTTCAGGGCGTCGCTAGCCAAGTCAGTGGTGTGCTTGCCAAGTTGCCACACAGGCTTTGCTTTATGCTGTTGGATTGGGGAAAGGAGCTATTCCTACAGCTGCGGCAGTGA

Protein Analysis

247

Amino Acids

26.64

Weight (kDa)

6.13

Isoelectric Point (pI)

53.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UVB_sens_prot PF04884 181 - 224 1.2e-11 Vitamin B6 photo-protection and homoeostasis domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 193
Acc36I ACCTGC 1 cut(s) 193
AccII CGCG 3 cut(s) 64, 80, 144
AclWI GGATC 1 cut(s) 319
AcoI YGGCCR 1 cut(s) 198
AcsI RAATTY 1 cut(s) 467
AcyI GRCGYC 2 cut(s) 216, 642
AfiI CCNNNNNNNGG 3 cut(s) 203, 285, 400
AgsI TTSAA 1 cut(s) 516
AhlI ACTAGT 1 cut(s) 599
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
AluBI AGCT 5 cut(s) 376, 457, 522, 721, 733
AluI AGCT 5 cut(s) 376, 457, 522, 721, 733
Alw26I GTCTC 1 cut(s) 216
AlwI GGATC 1 cut(s) 319
AoxI GGCC 2 cut(s) 198, 348
ApeKI GCWGC 3 cut(s) 491, 538, 733
ApoI RAATTY 1 cut(s) 467
Asp700I GAANNNNTTC 1 cut(s) 582
AspLEI GCGC 3 cut(s) 11, 82, 146
AsuHPI GGTGA 4 cut(s) 19, 120, 140, 169
AsuNHI GCTAGC 1 cut(s) 647
BbvI GCAGC 3 cut(s) 478, 525, 720
BceAI ACGGC 1 cut(s) 496
BcoDI GTCTC 1 cut(s) 216
BcuI ACTAGT 1 cut(s) 599
BfaI CTAG 3 cut(s) 395, 600, 648
BfmI CTRYAG 1 cut(s) 728
BfuAI ACCTGC 1 cut(s) 193
BglI GCCNNNNNGGC 2 cut(s) 356, 685
BmiI GGNNCC 1 cut(s) 211
BmsI GCATC 1 cut(s) 558
BmtI GCTAGC 1 cut(s) 651
BpmI CTGGAG 1 cut(s) 646
Bpu10I CCTNAGC 1 cut(s) 377
BsaHI GRCGYC 2 cut(s) 216, 642
BsaJI CCNNGG 2 cut(s) 31, 354
Bsc4I CCNNNNNNNGG 3 cut(s) 203, 285, 400
Bse118I RCCGGY 2 cut(s) 196, 236
Bse3DI GCAATG 1 cut(s) 548
BseDI CCNNGG 2 cut(s) 31, 354
BseGI GGATG 2 cut(s) 275, 418
BseLI CCNNNNNNNGG 3 cut(s) 203, 285, 400
BseMI GCAATG 1 cut(s) 548
BseMII CTCAG 1 cut(s) 391
BseRI GAGGAG 4 cut(s) 79, 84, 419, 422
BseXI GCAGC 3 cut(s) 478, 525, 720
Bsh1236I CGCG 3 cut(s) 64, 80, 144
BshFI GGCC 2 cut(s) 200, 350
BsiSI CCGG 3 cut(s) 197, 219, 237
BslFI GGGAC 2 cut(s) 51, 491
BslI CCNNNNNNNGG 3 cut(s) 203, 285, 400
BsmAI GTCTC 1 cut(s) 216
BsmFI GGGAC 2 cut(s) 51, 491
BsnI GGCC 2 cut(s) 200, 350
Bsp143I GATC 1 cut(s) 311
BspANI GGCC 2 cut(s) 200, 350
BspCNI CTCAG 1 cut(s) 390
BspFNI CGCG 3 cut(s) 64, 80, 144
BspLI GGNNCC 1 cut(s) 211
BspMI ACCTGC 1 cut(s) 193
BspOI GCTAGC 1 cut(s) 651
BspPI GGATC 1 cut(s) 319
BsrDI GCAATG 1 cut(s) 548
BsrFI RCCGGY 2 cut(s) 196, 236
BssAI RCCGGY 2 cut(s) 196, 236
BssECI CCNNGG 2 cut(s) 31, 354
BssMI GATC 1 cut(s) 311
BssNI GRCGYC 2 cut(s) 216, 642
BssT1I CCWWGG 1 cut(s) 31
Bst4CI ACNGT 2 cut(s) 138, 305
Bst6I CTCTTC 1 cut(s) 119
BstACI GRCGYC 2 cut(s) 216, 642
BstAPI GCANNNNNTGC 1 cut(s) 568
BstC8I GCNNGC 7 cut(s) 198, 202, 238, 374, 384, 649, 669
BstDEI CTNAG 1 cut(s) 377
BstDSI CCRYGG 1 cut(s) 354
BstF5I GGATG 2 cut(s) 275, 418
BstFNI CGCG 3 cut(s) 64, 80, 144
BstHHI GCGC 3 cut(s) 11, 82, 146
BstKTI GATC 1 cut(s) 314
BstMAI GTCTC 1 cut(s) 216
BstMBI GATC 1 cut(s) 311
BstMWI GCNNNNNNNGC 5 cut(s) 246, 356, 568, 648, 685
BstSFI CTRYAG 1 cut(s) 728
BstUI CGCG 3 cut(s) 64, 80, 144
BstV1I GCAGC 3 cut(s) 478, 525, 720
BstX2I RGATCY 1 cut(s) 311
BstXI CCANNNNNNTGG 1 cut(s) 659
BstYI RGATCY 1 cut(s) 311
BsuRI GGCC 2 cut(s) 200, 350
BtgI CCRYGG 1 cut(s) 354
BtsCI GGATG 2 cut(s) 275, 418
BtsIMutI CAGTG 1 cut(s) 664
BveI ACCTGC 1 cut(s) 193
Cac8I GCNNGC 7 cut(s) 198, 202, 238, 374, 384, 649, 669
CfoI GCGC 3 cut(s) 11, 82, 146
Cfr10I RCCGGY 2 cut(s) 196, 236
CseI GACGC 4 cut(s) 53, 224, 387, 631
CspCI CAANNNNNGTGG 4 cut(s) 289, 324, 484, 519
CviAII CATG 3 cut(s) 84, 282, 293
DdeI CTNAG 1 cut(s) 377
DpnI GATC 1 cut(s) 313
DpnII GATC 1 cut(s) 311
EaeI YGGCCR 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 31
EcoT14I CCWWGG 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 3 cut(s) 87, 285, 296
FaiI YATR 8 cut(s) 85, 283, 294, 318, 341, 390, 591, 698
FaqI GGGAC 2 cut(s) 51, 491
FatI CATG 3 cut(s) 83, 281, 292
FokI GGATG 2 cut(s) 262, 425
FspBI CTAG 3 cut(s) 395, 600, 648
GlaI GCGC 3 cut(s) 10, 81, 145
GsuI CTGGAG 1 cut(s) 646
HaeIII GGCC 2 cut(s) 200, 350
HapII CCGG 3 cut(s) 197, 219, 237
HgaI GACGC 4 cut(s) 53, 224, 387, 631
HhaI GCGC 3 cut(s) 11, 82, 146
Hin1I GRCGYC 2 cut(s) 216, 642
Hin1II CATG 3 cut(s) 87, 285, 296
Hin6I GCGC 3 cut(s) 9, 80, 144
HinP1I GCGC 3 cut(s) 9, 80, 144
HindIII AAGCTT 1 cut(s) 520
HinfI GANTC 4 cut(s) 269, 419, 529, 550
HpaII CCGG 3 cut(s) 197, 219, 237
HphI GGTGA 4 cut(s) 19, 120, 140, 169
Hpy166II GTNNAC 2 cut(s) 27, 450
Hpy188I TCNGA 2 cut(s) 214, 403
Hpy188III TCNNGA 4 cut(s) 464, 575, 611, 625
Hpy8I GTNNAC 2 cut(s) 27, 450
Hpy99I CGWCG 3 cut(s) 218, 403, 647
HpyAV CCTTC 2 cut(s) 430, 572
HpyCH4III ACNGT 2 cut(s) 138, 305
HpyCH4V TGCA 3 cut(s) 541, 546, 562
HpyF10VI GCNNNNNNNGC 5 cut(s) 246, 356, 568, 648, 685
HpyF3I CTNAG 1 cut(s) 377
Hsp92I GRCGYC 2 cut(s) 216, 642
Hsp92II CATG 3 cut(s) 87, 285, 296
HspAI GCGC 3 cut(s) 9, 80, 144
KroI GCCGGC 2 cut(s) 196, 236
KroNI GCCGGC 2 cut(s) 198, 238
Kzo9I GATC 1 cut(s) 311
LmnI GCTCC 3 cut(s) 92, 215, 718
Lsp1109I GCAGC 3 cut(s) 478, 525, 720
LweI GCATC 1 cut(s) 558
MaeI CTAG 3 cut(s) 395, 600, 648
MaeIII GTNAC 1 cut(s) 595
MalI GATC 1 cut(s) 313
MboI GATC 1 cut(s) 311
MboII GAAGA 1 cut(s) 106
MfeI CAATTG 1 cut(s) 563
MflI RGATCY 1 cut(s) 311
MluCI AATT 2 cut(s) 467, 563
MlyI GAGTC 3 cut(s) 263, 428, 538
MmeI TCCRAC 4 cut(s) 233, 237, 381, 684
MroNI GCCGGC 2 cut(s) 196, 236
MroXI GAANNNNTTC 1 cut(s) 582
MseI TTAA 1 cut(s) 164
MslI CAYNNNNRTG 2 cut(s) 280, 286
MspA1I CMGCKG 2 cut(s) 204, 733
MspI CCGG 3 cut(s) 197, 219, 237
MunI CAATTG 1 cut(s) 563
MvnI CGCG 3 cut(s) 64, 80, 144
MwoI GCNNNNNNNGC 5 cut(s) 246, 356, 568, 648, 685
NaeI GCCGGC 2 cut(s) 198, 238
NdeII GATC 1 cut(s) 311
NgoMIV GCCGGC 2 cut(s) 196, 236
NheI GCTAGC 1 cut(s) 647
NlaIII CATG 3 cut(s) 87, 285, 296
NlaIV GGNNCC 1 cut(s) 211
PaqCI CACCTGC 1 cut(s) 193
PdiI GCCGGC 2 cut(s) 198, 238
PdmI GAANNNNTTC 1 cut(s) 582
PfeI GAWTC 1 cut(s) 550
PleI GAGTC 3 cut(s) 263, 427, 537
PpsI GAGTC 3 cut(s) 263, 427, 537
PspN4I GGNNCC 1 cut(s) 211
PsuI RGATCY 1 cut(s) 311
PvuII CAGCTG 1 cut(s) 733
RseI CAYNNNNRTG 2 cut(s) 280, 286
SaqAI TTAA 1 cut(s) 164
Sau3AI GATC 1 cut(s) 311
SchI GAGTC 3 cut(s) 263, 428, 538
SetI ASST 9 cut(s) 58, 153, 187, 324, 378, 459, 524, 723, 735
SfaNI GCATC 1 cut(s) 558
SfcI CTRYAG 1 cut(s) 728
SmiMI CAYNNNNRTG 2 cut(s) 280, 286
SpeI ACTAGT 1 cut(s) 599
Sse9I AATT 2 cut(s) 467, 563
SspMI CTAG 3 cut(s) 395, 600, 648
StyI CCWWGG 1 cut(s) 31
TaaI ACNGT 2 cut(s) 138, 305
TaqI TCGA 1 cut(s) 267
TasI AATT 2 cut(s) 467, 563
TauI GCSGC 9 cut(s) 77, 80, 160, 207, 210, 243, 246, 249, 739
TfiI GAWTC 1 cut(s) 550
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TscAI CASTG 1 cut(s) 664
TseI GCWGC 3 cut(s) 491, 538, 733
TspGWI ACGGA 1 cut(s) 343
TspRI CASTG 1 cut(s) 664
XapI RAATTY 1 cut(s) 467
XmnI GAANNNNTTC 1 cut(s) 582
XspI CTAG 3 cut(s) 395, 600, 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.