Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005828

Physical Location & Seq

Genomic Coordinates Reverse (-)

27166959 .. 27171170

Gene Structure 4212 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g37260.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGGCTGCGCTTCCAAGTCCTTGTTCACTCTCCATTTCCCGCCTCCACCGCGTCCCTACCTCGCCGCCGCTACCAACTCCGCCGCGCCATGGCCCTCTCCTCCAAACCTCACTCCTCTCTTCTCTTCCCTCCACCTCAACTCACCACCGCAATTCCGCTCCCGCGTCCTGCCGCCTCTAAAACATTTCCTCACCGCCCCCACCGGCGGCTCCGACGCCGGAAACAACAACAACAACTCCGGCGGAGGTTGGAACAATCCCTTCGACTCATCCTCGTGGTGGTGGCACGACGACGACAGCGGCGGTTCGTCTCACAACCTCGCTCTGTTCTCGTCTATATTCCTCGCCGCCGTGGCGTGTTGCTTCTGCCACCTCAGGCTGGCGTATGCCCTAGCGTCGGAGGAGGACGCGGAGTCTGTGTGGGAGGTCAAGGGAGGCAAGTGGACGAAGCTCGCTCCTGATTTTGTGAGGGACGCCTTTGTTGCTGACGGCGGCGGCGGCTTGGGTTCGATAAGCTTTGAGAGCCTAGGGCTTCAATGCAAGAGTCTATTTGTGCAGTTGATGCTTCCAGAAGGTTTTCCTGATAGTGTGACTAGTGATTATCTGGACTACTCTCTCTGGAGAGCTGTCCAGGGCGTCGCTAGCCAGGTCAGCGGTGTCCTTGCCACACAGGCTTTGCTGTATGCTGTTGGATTGGGGAAAGGTGCTATTCCGACGGCTGCGGCGCTGAATTGGGTGCTCAAGGATGGGATTGGATACCTGAGCAAGATTATGCTCTCGAAATACGGGAGGCATTTTGATGTCAACCCGAAAGGGTGGAGGCTGTTTGCTGACCTTCTTGAGAATGCTGCTTTTGGAATGGAGATGCTTACGCCTGTGTTTCCTAATCATTTTCTCTTGATTGGTGCTGCTGCTGGCGCAGGGCGCTCGGCTGCTGCACTTATTCAGGCTGCTACAAGGAGCTGTTTCTATGCTGGTTTTGCTGCTCAGAGGAACTTTGCTGAGGTGATTGCTAAGGGTGAAGCTCAGGGAATGGTTTGGTTTTTAGCGAATATCTGCTTAGTGGCCAAGCACCTCCTGTCAAAGATGTCAACGAAGAGGAACCGCTTTTTCCAGCTGTACCATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0010224 GO:0031967 GO:0031975 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF647

Protein Analysis

377

Amino Acids

40.52

Weight (kDa)

8.42

Isoelectric Point (pI)

43.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UVB_sens_prot	PF04884	180 - 410	1.8e-78	Vitamin B6 photo-protection and homoeostasis domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45890
fragaria_vesca	FvH4_2g37260 FvH4_2g37260 FvH4_2g37260 FvH4_2g37260 FvH4_2g37260 FvH4_2g37260 FvH4_2g37260 FvH4_2g37260
malus_domestica	MD08G1000800.v1.1
prunus_persica	Prupe.1G352800_v2.0.a1
pyrus_communis	pycom08g00030
rosa_chinensis	RchiOBHm_Chr6g0304441 RchiOBHm_Chr6g0304461
rosa_laevigata	RLG00000010975 RLG00000010978
rosa_multiflora	Rmu_ssc0000218.1_g000052
rosa_roxburghii	Rroxscaffold_7G00163730
rosa_rugosa	Rorug06G0331800 Rorug06G0331900
rosa_samantha	Rh6AG444500 Rh6AG444700 Rh6BG457700 Rh6BG457900 Rh6CG457300 Rh6DG444000 Rh6DG444200
rosa_wichuraiana	Rw6G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	159
AccII	CGCG	4 cut(s)	52, 86, 165, 410
AcoI	YGGCCR	1 cut(s)	1065
AcyI	GRCGYC	3 cut(s)	216, 474, 636
AfaI	GTAC	1 cut(s)	1121
AfiI	CCNNNNNNNGG	5 cut(s)	90, 206, 279, 379, 397
AgsI	TTSAA	1 cut(s)	536
AhdI	GACNNNNNGTC	1 cut(s)	412
AhlI	ACTAGT	1 cut(s)	593
AjnI	CCWGG	2 cut(s)	630, 645
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AluBI	AGCT	6 cut(s)	451, 516, 626, 963, 1025, 1117
AluI	AGCT	6 cut(s)	451, 516, 626, 963, 1025, 1117
Alw21I	GWGCWC	1 cut(s)	741
Alw26I	GTCTC	1 cut(s)	315
AoxI	GGCC	2 cut(s)	92, 1065
ApeKI	GCWGC	9 cut(s)	6, 719, 848, 908, 911, 932, 935, 950, 983
Asp700I	GAANNNNTTC	1 cut(s)	576
AspA2I	CCTAGG	1 cut(s)	526
AspLEI	GCGC	5 cut(s)	11, 88, 727, 920, 927
AspS9I	GGNCC	1 cut(s)	93
AsuHPI	GGTGA	4 cut(s)	135, 184, 1018, 1031
AsuNHI	GCTAGC	1 cut(s)	641
AvrII	CCTAGG	1 cut(s)	526
AxyI	CCTNAGG	1 cut(s)	374
BalI	TGGCCA	1 cut(s)	1067
BauI	CACGAG	1 cut(s)	274
Bbv12I	GWGCWC	1 cut(s)	741
BbvCI	CCTCAGC	1 cut(s)	1002
BbvI	GCAGC	8 cut(s)	706, 835, 895, 898, 919, 922, 937, 970
BccI	CCATC	1 cut(s)	740
BceAI	ACGGC	3 cut(s)	335, 505, 732
BcgI	CGANNNNNNTGC	2 cut(s)	909, 943
BciT130I	CCWGG	2 cut(s)	632, 647
BciVI	GTATCC	1 cut(s)	749
BcoDI	GTCTC	1 cut(s)	315
BcuI	ACTAGT	1 cut(s)	593
BfaI	CTAG	4 cut(s)	392, 527, 594, 642
BfoI	RGCGCY	2 cut(s)	728, 928
BfuI	GTATCC	1 cut(s)	749
BglI	GCCNNNNNGGC	2 cut(s)	353, 671
BlnI	CCTAGG	1 cut(s)	526
Bme1390I	CCNGG	2 cut(s)	632, 647
BmeRI	GACNNNNNGTC	1 cut(s)	412
BmgT120I	GGNCC	1 cut(s)	93
BmiI	GGNNCC	2 cut(s)	211, 1103
BmrFI	CCNGG	2 cut(s)	632, 647
BmsI	GCATC	2 cut(s)	552, 855
BmtI	GCTAGC	1 cut(s)	645
BpmI	CTGGAG	1 cut(s)	640
Bpu10I	CCTNAGC	4 cut(s)	761, 1002, 1014, 1026
BpuEI	CTTGAG	2 cut(s)	725, 860
BsaHI	GRCGYC	3 cut(s)	216, 474, 636
BsaJI	CCNNGG	4 cut(s)	89, 351, 526, 631
BsaXI	ACNNNNNCTCC	4 cut(s)	221, 251, 404, 434
Bsc4I	CCNNNNNNNGG	5 cut(s)	90, 206, 279, 379, 397
Bse118I	RCCGGY	1 cut(s)	203
Bse21I	CCTNAGG	1 cut(s)	374
BseBI	CCWGG	2 cut(s)	632, 647
BseDI	CCNNGG	4 cut(s)	89, 351, 526, 631
BseGI	GGATG	2 cut(s)	269, 751
BseLI	CCNNNNNNNGG	5 cut(s)	90, 206, 279, 379, 397
BseMII	CTCAG	5 cut(s)	388, 752, 993, 1001, 1040
BseRI	GAGGAG	3 cut(s)	90, 105, 416
BseXI	GCAGC	8 cut(s)	706, 835, 895, 898, 919, 922, 937, 970
BsgI	GTGCAG	2 cut(s)	575, 921
Bsh1236I	CGCG	4 cut(s)	52, 86, 165, 410
BshFI	GGCC	2 cut(s)	94, 1067
BsiHKAI	GWGCWC	1 cut(s)	741
BsiSI	CCGG	3 cut(s)	204, 219, 240
BslFI	GGGAC	2 cut(s)	39, 485
BslI	CCNNNNNNNGG	5 cut(s)	90, 206, 279, 379, 397
BsmAI	GTCTC	1 cut(s)	315
BsmBI	CGTCTC	1 cut(s)	315
BsmFI	GGGAC	2 cut(s)	39, 485
BsmI	GAATGC	1 cut(s)	850
BsnI	GGCC	2 cut(s)	94, 1067
Bsp1286I	GDGCHC	1 cut(s)	741
Bsp19I	CCATGG	1 cut(s)	89
BspANI	GGCC	2 cut(s)	94, 1067
BspCNI	CTCAG	5 cut(s)	387, 753, 994, 1000, 1039
BspFNI	CGCG	4 cut(s)	52, 86, 165, 410
BspLI	GGNNCC	2 cut(s)	211, 1103
BspOI	GCTAGC	1 cut(s)	645
BsrBI	CCGCTC	1 cut(s)	159
BsrFI	RCCGGY	1 cut(s)	203
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	4 cut(s)	89, 351, 526, 631
BssNI	GRCGYC	3 cut(s)	216, 474, 636
BssSI	CACGAG	1 cut(s)	274
BssT1I	CCWWGG	2 cut(s)	89, 526
Bst2BI	CACGAG	1 cut(s)	274
Bst2UI	CCWGG	2 cut(s)	632, 647
Bst6I	CTCTTC	3 cut(s)	125, 130, 1091
BstACI	GRCGYC	3 cut(s)	216, 474, 636
BstAPI	GCANNNNNTGC	1 cut(s)	562
BstC8I	GCNNGC	4 cut(s)	381, 453, 643, 916
BstDEI	CTNAG	7 cut(s)	374, 761, 987, 1002, 1014, 1026, 1060
BstDSI	CCRYGG	2 cut(s)	89, 351
BstF5I	GGATG	2 cut(s)	269, 751
BstFNI	CGCG	4 cut(s)	52, 86, 165, 410
BstH2I	RGCGCY	2 cut(s)	728, 928
BstHHI	GCGC	5 cut(s)	11, 88, 727, 920, 927
BstMAI	GTCTC	1 cut(s)	315
BstNI	CCWGG	2 cut(s)	632, 647
BstSCI	CCNGG	2 cut(s)	630, 645
BstUI	CGCG	4 cut(s)	52, 86, 165, 410
BstV1I	GCAGC	8 cut(s)	706, 835, 895, 898, 919, 922, 937, 970
Bsu36I	CCTNAGG	1 cut(s)	374
BsuI	GTATCC	1 cut(s)	749
BsuRI	GGCC	2 cut(s)	94, 1067
BtgI	CCRYGG	2 cut(s)	89, 351
BtsCI	GGATG	2 cut(s)	269, 751
Cac8I	GCNNGC	4 cut(s)	381, 453, 643, 916
CfoI	GCGC	5 cut(s)	11, 88, 727, 920, 927
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	93
CseI	GACGC	7 cut(s)	41, 154, 224, 384, 416, 482, 625
Csp6I	GTAC	1 cut(s)	1120
CviAII	CATG	1 cut(s)	90
CviQI	GTAC	1 cut(s)	1120
DdeI	CTNAG	7 cut(s)	374, 761, 987, 1002, 1014, 1026, 1060
DriI	GACNNNNNGTC	1 cut(s)	412
EaeI	YGGCCR	1 cut(s)	1065
Eam1104I	CTCTTC	3 cut(s)	125, 130, 1091
Eam1105I	GACNNNNNGTC	1 cut(s)	412
EarI	CTCTTC	3 cut(s)	125, 130, 1091
EciI	GGCGGA	2 cut(s)	70, 258
Eco130I	CCWWGG	2 cut(s)	89, 526
Eco81I	CCTNAGG	1 cut(s)	374
EcoRII	CCWGG	2 cut(s)	630, 645
EcoT14I	CCWWGG	2 cut(s)	89, 526
ErhI	CCWWGG	2 cut(s)	89, 526
Esp3I	CGTCTC	1 cut(s)	315
FaeI	CATG	1 cut(s)	93
FaiI	YATR	6 cut(s)	91, 338, 387, 684, 773, 972
FaqI	GGGAC	2 cut(s)	39, 485
FatI	CATG	1 cut(s)	89
FauI	CCCGC	2 cut(s)	48, 170
FokI	GGATG	2 cut(s)	256, 758
FspBI	CTAG	4 cut(s)	392, 527, 594, 642
GlaI	GCGC	5 cut(s)	10, 87, 726, 919, 926
GsuI	CTGGAG	1 cut(s)	640
HaeII	RGCGCY	2 cut(s)	728, 928
HaeIII	GGCC	2 cut(s)	94, 1067
HapII	CCGG	3 cut(s)	204, 219, 240
HgaI	GACGC	7 cut(s)	41, 154, 224, 384, 416, 482, 625
HhaI	GCGC	5 cut(s)	11, 88, 727, 920, 927
Hin1I	GRCGYC	3 cut(s)	216, 474, 636
Hin1II	CATG	1 cut(s)	93
Hin6I	GCGC	5 cut(s)	9, 86, 725, 918, 925
HinP1I	GCGC	5 cut(s)	9, 86, 725, 918, 925
HincII	GTYRAC	2 cut(s)	805, 1092
HindII	GTYRAC	2 cut(s)	805, 1092
HindIII	AAGCTT	1 cut(s)	514
HinfI	GANTC	3 cut(s)	266, 413, 544
HpaII	CCGG	3 cut(s)	204, 219, 240
HphI	GGTGA	4 cut(s)	135, 184, 1018, 1031
Hpy166II	GTNNAC	4 cut(s)	27, 444, 805, 1092
Hpy188I	TCNGA	5 cut(s)	214, 400, 714, 990, 1130
Hpy188III	TCNNGA	8 cut(s)	458, 569, 581, 605, 619, 778, 839, 898
Hpy8I	GTNNAC	4 cut(s)	27, 444, 805, 1092
Hpy99I	CGWCG	6 cut(s)	218, 293, 296, 400, 641, 718
HpyAV	CCTTC	3 cut(s)	271, 566, 845
HpyCH4V	TGCA	3 cut(s)	540, 556, 938
HpyF3I	CTNAG	7 cut(s)	374, 761, 987, 1002, 1014, 1026, 1060
Hsp92I	GRCGYC	3 cut(s)	216, 474, 636
Hsp92II	CATG	1 cut(s)	93
HspAI	GCGC	5 cut(s)	9, 86, 725, 918, 925
LmnI	GCTCC	4 cut(s)	164, 215, 460, 960
Lsp1109I	GCAGC	8 cut(s)	706, 835, 895, 898, 919, 922, 937, 970
LweI	GCATC	2 cut(s)	552, 855
MaeI	CTAG	4 cut(s)	392, 527, 594, 642
MaeIII	GTNAC	1 cut(s)	589
MbiI	CCGCTC	1 cut(s)	159
MboII	GAAGA	3 cut(s)	112, 117, 1108
MhlI	GDGCHC	1 cut(s)	741
MlsI	TGGCCA	1 cut(s)	1067
MluCI	AATT	2 cut(s)	152, 730
MluNI	TGGCCA	1 cut(s)	1067
MlyI	GAGTC	3 cut(s)	260, 422, 553
MmeI	TCCRAC	5 cut(s)	230, 237, 378, 670, 737
Mox20I	TGGCCA	1 cut(s)	1067
MroXI	GAANNNNTTC	1 cut(s)	576
MscI	TGGCCA	1 cut(s)	1067
MslI	CAYNNNNRTG	2 cut(s)	274, 798
Msp20I	TGGCCA	1 cut(s)	1067
MspA1I	CMGCKG	3 cut(s)	300, 654, 1117
MspI	CCGG	3 cut(s)	204, 219, 240
MspR9I	CCNGG	2 cut(s)	632, 647
Mva1269I	GAATGC	1 cut(s)	850
MvaI	CCWGG	2 cut(s)	632, 647
MvnI	CGCG	4 cut(s)	52, 86, 165, 410
NcoI	CCATGG	1 cut(s)	89
NheI	GCTAGC	1 cut(s)	641
NlaIII	CATG	1 cut(s)	93
NlaIV	GGNNCC	2 cut(s)	211, 1103
NmeAIII	GCCGAG	1 cut(s)	908
NmuCI	GTSAC	1 cut(s)	589
PctI	GAATGC	1 cut(s)	850
PdmI	GAANNNNTTC	1 cut(s)	576
PleI	GAGTC	3 cut(s)	260, 421, 552
PpsI	GAGTC	3 cut(s)	260, 421, 552
Psp6I	CCWGG	2 cut(s)	630, 645
PspGI	CCWGG	2 cut(s)	630, 645
PspN4I	GGNNCC	2 cut(s)	211, 1103
PspPI	GGNCC	1 cut(s)	93
PvuII	CAGCTG	1 cut(s)	1117
RsaI	GTAC	1 cut(s)	1121
RsaNI	GTAC	1 cut(s)	1120
RseI	CAYNNNNRTG	2 cut(s)	274, 798
Sau96I	GGNCC	1 cut(s)	93
SchI	GAGTC	3 cut(s)	260, 422, 553
ScrFI	CCNGG	2 cut(s)	632, 647
SduI	GDGCHC	1 cut(s)	741
SfaNI	GCATC	2 cut(s)	552, 855
SgrAI	CRCCGGYG	1 cut(s)	203
SmiMI	CAYNNNNRTG	2 cut(s)	274, 798
SmlI	CTYRAG	2 cut(s)	740, 839
SmoI	CTYRAG	2 cut(s)	740, 839
SpeI	ACTAGT	1 cut(s)	593
Sse9I	AATT	2 cut(s)	152, 730
SspMI	CTAG	4 cut(s)	392, 527, 594, 642
StyD4I	CCNGG	2 cut(s)	630, 645
StyI	CCWWGG	2 cut(s)	89, 526
TaqI	TCGA	3 cut(s)	264, 509, 779
TasI	AATT	2 cut(s)	152, 730
TseFI	GTSAC	1 cut(s)	589
TseI	GCWGC	9 cut(s)	6, 719, 848, 908, 911, 932, 935, 950, 983
Tsp45I	GTSAC	1 cut(s)	589
XmaJI	CCTAGG	1 cut(s)	526
XmnI	GAANNNNTTC	1 cut(s)	576
XspI	CTAG	4 cut(s)	392, 527, 594, 642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.