Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005828

Physical Location & Seq

Genomic Coordinates Forward (+)

61897891 .. 61898787

Gene Structure 897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG444200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCTACCTGAATTAATTGGAAATGGCCAACTTTTGGGTCAAAACGTGAGGCTGGCGTATGCCCTAGCGTCGGAGGAGGAGGATGTTGAGTCTGTGTGGGAAGTGAGGGGAGGCAAGTGGACAAAGCTCGTTCCTGATTTTGTGAGGGACGGCTTTGTTGCTGCTAATGGCGGTGGCTTGGCTTCAGTAAGCTTTGGGAGTCTTTGGCTGCAATGCAAGAATCTGTTTGTGCAATTGATGCTTCCAGAAGGCTTTCCTCATAGTGTTACTAATGATTATCTGGACTACTCTCTCTGGAGAGCAGTTCAGGGCGTCGCTAGCCAAGTCAGTGGTGTGCTTGCCACACAGGCTTTGCTTTATGCTGTTGGATTGGGGAAAGGAGCTATTCCTACTGCTGCGGCGGTGAATTGGGTGCTTAAGGATGGGATTGGATACCTGAGCAAGATTATGCTCTCGAAATATGGGAGGCATTTTGATGTCAATCCGAAAGGGCGAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0010224 GO:0031967 GO:0031975 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF647

Protein Analysis

166

Amino Acids

17.92

Weight (kDa)

6.72

Isoelectric Point (pI)

24.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UVB_sens_prot	PF04884	71 - 163	1.3e-30	Vitamin B6 photo-protection and homoeostasis domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0005828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45890
fragaria_vesca	FvH4_2g37260 FvH4_2g37260 FvH4_2g37260 FvH4_2g37260 FvH4_2g37260 FvH4_2g37260 FvH4_2g37260 FvH4_2g37260
malus_domestica	MD08G1000800.v1.1
prunus_persica	Prupe.1G352800_v2.0.a1
pyrus_communis	pycom08g00030
rosa_chinensis	RchiOBHm_Chr6g0304441 RchiOBHm_Chr6g0304461
rosa_laevigata	RLG00000010975 RLG00000010978
rosa_multiflora	Rmu_ssc0000218.1_g000052
rosa_roxburghii	Rroxscaffold_7G00163730
rosa_rugosa	Rorug06G0331800 Rorug06G0331900
rosa_samantha	Rh6AG444500 Rh6AG444700 Rh6BG457700 Rh6BG457900 Rh6CG457300 Rh6DG444000 Rh6DG444200
rosa_wichuraiana	Rw6G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	34
AciI	CCGC	3 cut(s)	171, 398, 401
AcoI	YGGCCR	1 cut(s)	25
AcuI	CTGAAG	1 cut(s)	168
AcyI	GRCGYC	1 cut(s)	312
AfiI	CCNNNNNNNGG	2 cut(s)	34, 70
AflII	CTTAAG	1 cut(s)	416
AluBI	AGCT	3 cut(s)	127, 192, 383
AluI	AGCT	3 cut(s)	127, 192, 383
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	3 cut(s)	161, 208, 395
AseI	ATTAAT	1 cut(s)	14
Asp700I	GAANNNNTTC	1 cut(s)	252
AsuHPI	GGTGA	1 cut(s)	415
AsuNHI	GCTAGC	1 cut(s)	317
BalI	TGGCCA	1 cut(s)	27
BbvI	GCAGC	3 cut(s)	148, 195, 382
BccI	CCATC	1 cut(s)	416
BceAI	ACGGC	1 cut(s)	166
BciVI	GTATCC	1 cut(s)	425
BfaI	CTAG	2 cut(s)	65, 318
BfrI	CTTAAG	1 cut(s)	416
BfuI	GTATCC	1 cut(s)	425
BglI	GCCNNNNNGGC	1 cut(s)	347
BisI	GCNGC	4 cut(s)	162, 209, 396, 399
BlsI	GCNGC	4 cut(s)	163, 210, 397, 400
BmsI	GCATC	1 cut(s)	228
BmtI	GCTAGC	1 cut(s)	321
BpmI	CTGGAG	1 cut(s)	316
Bpu10I	CCTNAGC	1 cut(s)	437
BsaBI	GATNNNNATC	1 cut(s)	480
BsaHI	GRCGYC	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 70
Bse3DI	GCAATG	1 cut(s)	218
Bse8I	GATNNNNATC	1 cut(s)	480
BseGI	GGATG	2 cut(s)	88, 427
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	2 cut(s)	34, 70
BseMI	GCAATG	1 cut(s)	218
BseMII	CTCAG	1 cut(s)	428
BseRI	GAGGAG	2 cut(s)	89, 92
BseXI	GCAGC	3 cut(s)	148, 195, 382
BshFI	GGCC	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	2 cut(s)	34, 70
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	27
BspACI	CCGC	3 cut(s)	171, 398, 401
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	429
BspOI	GCTAGC	1 cut(s)	321
BspTI	CTTAAG	1 cut(s)	416
BsrDI	GCAATG	1 cut(s)	218
BssNI	GRCGYC	1 cut(s)	312
BstACI	GRCGYC	1 cut(s)	312
BstAFI	CTTAAG	1 cut(s)	416
BstAPI	GCANNNNNTGC	1 cut(s)	238
BstC8I	GCNNGC	3 cut(s)	54, 319, 339
BstDEI	CTNAG	1 cut(s)	437
BstF5I	GGATG	2 cut(s)	88, 427
BstMWI	GCNNNNNNNGC	3 cut(s)	238, 318, 347
BstV1I	GCAGC	3 cut(s)	148, 195, 382
BstXI	CCANNNNNNTGG	1 cut(s)	329
BsuI	GTATCC	1 cut(s)	425
BsuRI	GGCC	1 cut(s)	27
BtsCI	GGATG	2 cut(s)	88, 427
BtsIMutI	CAGTG	1 cut(s)	334
Cac8I	GCNNGC	3 cut(s)	54, 319, 339
CseI	GACGC	2 cut(s)	57, 301
DdeI	CTNAG	1 cut(s)	437
EaeI	YGGCCR	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	168
FaiI	YATR	5 cut(s)	60, 261, 360, 449, 462
FaqI	GGGAC	1 cut(s)	161
Fnu4HI	GCNGC	4 cut(s)	162, 209, 396, 399
FokI	GGATG	2 cut(s)	95, 434
Fsp4HI	GCNGC	4 cut(s)	162, 209, 396, 399
FspBI	CTAG	2 cut(s)	65, 318
GluI	GCNGC	4 cut(s)	162, 209, 396, 399
GsuI	CTGGAG	1 cut(s)	316
HaeIII	GGCC	1 cut(s)	27
HgaI	GACGC	2 cut(s)	57, 301
Hin1I	GRCGYC	1 cut(s)	312
HindIII	AAGCTT	1 cut(s)	190
HinfI	GANTC	3 cut(s)	89, 199, 220
HphI	GGTGA	1 cut(s)	415
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	2 cut(s)	73, 486
Hpy188III	TCNNGA	5 cut(s)	134, 245, 281, 295, 454
Hpy8I	GTNNAC	1 cut(s)	120
Hpy99I	CGWCG	2 cut(s)	73, 317
HpyAV	CCTTC	1 cut(s)	242
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	3 cut(s)	211, 216, 232
HpyF10VI	GCNNNNNNNGC	3 cut(s)	238, 318, 347
HpyF3I	CTNAG	1 cut(s)	437
HpySE526I	ACGT	1 cut(s)	45
Hsp92I	GRCGYC	1 cut(s)	312
LmnI	GCTCC	1 cut(s)	380
LpnPI	CCDG	9 cut(s)	21, 38, 147, 258, 266, 280, 293, 332, 449
Lsp1109I	GCAGC	3 cut(s)	148, 195, 382
LweI	GCATC	1 cut(s)	228
MaeI	CTAG	2 cut(s)	65, 318
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	265
MfeI	CAATTG	1 cut(s)	233
MlsI	TGGCCA	1 cut(s)	27
MluCI	AATT	4 cut(s)	11, 15, 233, 406
MluNI	TGGCCA	1 cut(s)	27
MlyI	GAGTC	2 cut(s)	98, 208
MmeI	TCCRAC	2 cut(s)	51, 346
MnlI	CCTC	9 cut(s)	42, 67, 70, 73, 99, 104, 138, 267, 459
Mox20I	TGGCCA	1 cut(s)	27
MroXI	GAANNNNTTC	1 cut(s)	252
MscI	TGGCCA	1 cut(s)	27
MseI	TTAA	3 cut(s)	14, 417, 499
MslI	CAYNNNNRTG	1 cut(s)	474
Msp20I	TGGCCA	1 cut(s)	27
MspCI	CTTAAG	1 cut(s)	416
MunI	CAATTG	1 cut(s)	233
MwoI	GCNNNNNNNGC	3 cut(s)	238, 318, 347
NheI	GCTAGC	1 cut(s)	317
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	220
PflMI	CCANNNNNTGG	1 cut(s)	34
PkrI	GCNGC	4 cut(s)	163, 210, 397, 400
PleI	GAGTC	2 cut(s)	97, 207
PpsI	GAGTC	2 cut(s)	97, 207
PshBI	ATTAAT	1 cut(s)	14
RseI	CAYNNNNRTG	1 cut(s)	474
SaqAI	TTAA	3 cut(s)	14, 417, 499
SatI	GCNGC	4 cut(s)	162, 209, 396, 399
SchI	GAGTC	2 cut(s)	98, 208
SetI	ASST	6 cut(s)	10, 48, 129, 194, 385, 438
SfaNI	GCATC	1 cut(s)	228
SmiMI	CAYNNNNRTG	1 cut(s)	474
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
Sse9I	AATT	4 cut(s)	11, 15, 233, 406
SsiI	CCGC	3 cut(s)	171, 398, 401
SspMI	CTAG	2 cut(s)	65, 318
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	1 cut(s)	455
TasI	AATT	4 cut(s)	11, 15, 233, 406
TauI	GCSGC	1 cut(s)	401
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	3 cut(s)	14, 417, 499
Tru9I	TTAA	3 cut(s)	14, 417, 499
TscAI	CASTG	1 cut(s)	334
TseI	GCWGC	3 cut(s)	161, 208, 395
TspRI	CASTG	1 cut(s)	334
Van91I	CCANNNNNTGG	1 cut(s)	34
Vha464I	CTTAAG	1 cut(s)	416
VspI	ATTAAT	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	2 cut(s)	65, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.