Rh6BG457700

UPF0420 protein C16orf58 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0005828
Physical Location & Seq
Reverse (-)
66942027 .. 66942980
954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG457700.1

Sequence Viewer

Length: 336 bp
ATGTTACCTGAATTAATTGGAAATGGCCAACTTTTGGGTCAAAACGTTAGGCTGGCGTATGCCCTAGCGTCGGAGGAGGAGGATGTTGAGTCTGTGTGGGAAGTGAGGGGAGGCAAGTGGACAAAGCTCGTTCCTGATTTTGTGAGGGACGGCTTTGTTGCTGCTAATGGCGGTGGCTTGGCTTCAGCTTTGCTTTATGCTGTTGGATTGCTTTCCCCAATTCCTACAGCTGCGGCGGTGAATTGGGTGCTTAAGGATGGGATTGGATACCTGAGCAAGATTATGCTCTCGAAATATGGGAGGCATTTTGATGTCAATCCGAAAGGGCGAAGTTAA

Protein Analysis

111

Amino Acids

11.92

Weight (kDa)

6.56

Isoelectric Point (pI)

27.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UVB_sens_prot PF04884 62 - 108 4.4e-08 Vitamin B6 photo-protection and homoeostasis domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 34
AciI CCGC 3 cut(s) 171, 233, 236
AclI AACGTT 1 cut(s) 45
AcoI YGGCCR 1 cut(s) 25
AcuI CTGAAG 1 cut(s) 168
AfiI CCNNNNNNNGG 2 cut(s) 34, 70
AflII CTTAAG 1 cut(s) 251
AluBI AGCT 3 cut(s) 127, 188, 230
AluI AGCT 3 cut(s) 127, 188, 230
AoxI GGCC 1 cut(s) 25
ApeKI GCWGC 2 cut(s) 161, 230
AseI ATTAAT 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 250
BalI TGGCCA 1 cut(s) 27
BbvI GCAGC 2 cut(s) 148, 217
BccI CCATC 1 cut(s) 251
BceAI ACGGC 1 cut(s) 166
BciVI GTATCC 1 cut(s) 260
BfaI CTAG 1 cut(s) 65
BfmI CTRYAG 1 cut(s) 225
BfrI CTTAAG 1 cut(s) 251
BfuI GTATCC 1 cut(s) 260
BisI GCNGC 3 cut(s) 162, 231, 234
BlsI GCNGC 3 cut(s) 163, 232, 235
Bpu10I CCTNAGC 1 cut(s) 272
BsaBI GATNNNNATC 1 cut(s) 315
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 70
Bse8I GATNNNNATC 1 cut(s) 315
BseGI GGATG 2 cut(s) 88, 262
BseJI GATNNNNATC 1 cut(s) 315
BseLI CCNNNNNNNGG 2 cut(s) 34, 70
BseMII CTCAG 1 cut(s) 263
BseRI GAGGAG 2 cut(s) 89, 92
BseXI GCAGC 2 cut(s) 148, 217
BshFI GGCC 1 cut(s) 27
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 2 cut(s) 34, 70
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 1 cut(s) 27
BspACI CCGC 3 cut(s) 171, 233, 236
BspANI GGCC 1 cut(s) 27
BspCNI CTCAG 1 cut(s) 264
BspTI CTTAAG 1 cut(s) 251
BstAFI CTTAAG 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 1 cut(s) 272
BstF5I GGATG 2 cut(s) 88, 262
BstSFI CTRYAG 1 cut(s) 225
BstV1I GCAGC 2 cut(s) 148, 217
BsuI GTATCC 1 cut(s) 260
BsuRI GGCC 1 cut(s) 27
BtsCI GGATG 2 cut(s) 88, 262
Cac8I GCNNGC 1 cut(s) 54
CseI GACGC 1 cut(s) 57
CviJI RGCY 8 cut(s) 27, 52, 127, 153, 177, 182, 188, 230
CviKI_1 RGCY 8 cut(s) 27, 52, 127, 153, 177, 182, 188, 230
DdeI CTNAG 1 cut(s) 272
EaeI YGGCCR 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 168
FaiI YATR 4 cut(s) 60, 198, 284, 297
FaqI GGGAC 1 cut(s) 161
Fnu4HI GCNGC 3 cut(s) 162, 231, 234
FokI GGATG 2 cut(s) 95, 269
Fsp4HI GCNGC 3 cut(s) 162, 231, 234
FspBI CTAG 1 cut(s) 65
GluI GCNGC 3 cut(s) 162, 231, 234
HaeIII GGCC 1 cut(s) 27
HgaI GACGC 1 cut(s) 57
HinfI GANTC 1 cut(s) 89
HphI GGTGA 1 cut(s) 250
Hpy166II GTNNAC 1 cut(s) 120
Hpy188I TCNGA 2 cut(s) 73, 321
Hpy188III TCNNGA 2 cut(s) 134, 289
Hpy8I GTNNAC 1 cut(s) 120
Hpy99I CGWCG 1 cut(s) 73
HpyCH4IV ACGT 1 cut(s) 45
HpyF3I CTNAG 1 cut(s) 272
HpySE526I ACGT 1 cut(s) 45
LpnPI CCDG 4 cut(s) 21, 38, 147, 284
Lsp1109I GCAGC 2 cut(s) 148, 217
MaeI CTAG 1 cut(s) 65
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 1 cut(s) 3
MlsI TGGCCA 1 cut(s) 27
MluCI AATT 4 cut(s) 11, 15, 219, 241
MluNI TGGCCA 1 cut(s) 27
MlyI GAGTC 1 cut(s) 98
MmeI TCCRAC 2 cut(s) 51, 184
MnlI CCTC 7 cut(s) 67, 70, 73, 99, 104, 138, 294
Mox20I TGGCCA 1 cut(s) 27
MscI TGGCCA 1 cut(s) 27
MseI TTAA 3 cut(s) 14, 252, 334
MslI CAYNNNNRTG 1 cut(s) 309
Msp20I TGGCCA 1 cut(s) 27
MspA1I CMGCKG 1 cut(s) 230
MspCI CTTAAG 1 cut(s) 251
PflMI CCANNNNNTGG 1 cut(s) 34
PkrI GCNGC 3 cut(s) 163, 232, 235
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PshBI ATTAAT 1 cut(s) 14
Psp1406I AACGTT 1 cut(s) 45
PvuII CAGCTG 1 cut(s) 230
RseI CAYNNNNRTG 1 cut(s) 309
SaqAI TTAA 3 cut(s) 14, 252, 334
SatI GCNGC 3 cut(s) 162, 231, 234
SchI GAGTC 1 cut(s) 98
SetI ASST 6 cut(s) 10, 48, 129, 190, 232, 273
SfcI CTRYAG 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 309
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 4 cut(s) 11, 15, 219, 241
SsiI CCGC 3 cut(s) 171, 233, 236
SspMI CTAG 1 cut(s) 65
TaiI ACGT 1 cut(s) 48
TaqI TCGA 1 cut(s) 290
TasI AATT 4 cut(s) 11, 15, 219, 241
TauI GCSGC 1 cut(s) 236
Tru1I TTAA 3 cut(s) 14, 252, 334
Tru9I TTAA 3 cut(s) 14, 252, 334
TseI GCWGC 2 cut(s) 161, 230
Van91I CCANNNNNTGG 1 cut(s) 34
Vha464I CTTAAG 1 cut(s) 251
VspI ATTAAT 1 cut(s) 14
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.