Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005828

Physical Location & Seq

Genomic Coordinates Reverse (-)

5781777 .. 5782662

Gene Structure 886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010975

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGGTTGCGCTTCCAAGTCCTTGTTCACCAAAGGAATCACTAACCATTTCCCACCTCCACCGCGTCCCTACGTCGCCGCCGCGCCATGCTCATTTCCTCTAAAATCCACTCCACTCTTCTCTTCCCTCCGTCTCACTTCACCGCCACAGTTTCGCGCTCACCTCCTGCCTCCTTTAACACATTTACTCACCGCAACCGCTCTCCTGCCGGCCAGCGGCGGCTCTGACGCCGGAGACAACAATAGTGGCGGCGGCGGTTGGAATAATCCATTCGATTCATCCTCCTCATGGTGGTGGCATGACGACAACGACAACGGTGCGTCGGAGGAGGAGGATGTTGAGTCTGTGTGGGAGGTGAAGGGAGGCAAGTGGACAAAGCTCGTTCCTGATTTTGTGAGGGACGGCTTTGTTGCTGCTAATGGCGGTGGCTTGGCTTCAGCTTTCCTCATAGTGTTACTAGTGATTATCTGGACTACCCTCTCTGGAGACTGGAGAGCAGTTCAGGGCGTCGCTAGCCAAGTCAGTGGTGTGCTTGCCACACAGGCTTTGCTTTATGCTGTTGGATTGGGGAAAGGAGCTATTCCTACAGCTGCGGCAGTGAATTTTGGGTGCTTAAGGATGGGATTGGATACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0010224 GO:0031967 GO:0031975 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF647

Protein Analysis

212

Amino Acids

22.09

Weight (kDa)

5.73

Isoelectric Point (pI)

34.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45890
fragaria_vesca	FvH4_2g37260 FvH4_2g37260 FvH4_2g37260 FvH4_2g37260 FvH4_2g37260 FvH4_2g37260 FvH4_2g37260 FvH4_2g37260
malus_domestica	MD08G1000800.v1.1
prunus_persica	Prupe.1G352800_v2.0.a1
pyrus_communis	pycom08g00030
rosa_chinensis	RchiOBHm_Chr6g0304441 RchiOBHm_Chr6g0304461
rosa_laevigata	RLG00000010975 RLG00000010978
rosa_multiflora	Rmu_ssc0000218.1_g000052
rosa_roxburghii	Rroxscaffold_7G00163730
rosa_rugosa	Rorug06G0331800 Rorug06G0331900
rosa_samantha	Rh6AG444500 Rh6AG444700 Rh6BG457700 Rh6BG457900 Rh6CG457300 Rh6DG444000 Rh6DG444200
rosa_wichuraiana	Rw6G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	200
AccII	CGCG	3 cut(s)	64, 83, 156
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	601
AcuI	CTGAAG	1 cut(s)	420
AcyI	GRCGYC	2 cut(s)	228, 507
AfiI	CCNNNNNNNGG	3 cut(s)	215, 288, 291
AflII	CTTAAG	1 cut(s)	613
AhlI	ACTAGT	1 cut(s)	457
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AluBI	AGCT	4 cut(s)	379, 440, 578, 590
AluI	AGCT	4 cut(s)	379, 440, 578, 590
Alw26I	GTCTC	3 cut(s)	137, 228, 480
AoxI	GGCC	1 cut(s)	210
ApeKI	GCWGC	2 cut(s)	413, 590
ApoI	RAATTY	1 cut(s)	601
AspLEI	GCGC	3 cut(s)	11, 85, 158
AsuHPI	GGTGA	5 cut(s)	19, 132, 152, 181, 367
AsuNHI	GCTAGC	1 cut(s)	512
BbvI	GCAGC	2 cut(s)	400, 577
BccI	CCATC	1 cut(s)	613
BceAI	ACGGC	1 cut(s)	418
BcgI	CGANNNNNNTGC	2 cut(s)	299, 333
BciVI	GTATCC	1 cut(s)	622
BcoDI	GTCTC	3 cut(s)	137, 228, 480
BcuI	ACTAGT	1 cut(s)	457
BfaI	CTAG	2 cut(s)	458, 513
BfmI	CTRYAG	1 cut(s)	585
BfrI	CTTAAG	1 cut(s)	613
BfuI	GTATCC	1 cut(s)	622
BglI	GCCNNNNNGGC	1 cut(s)	542
BisI	GCNGC	9 cut(s)	78, 81, 217, 220, 250, 253, 414, 591, 594
BlsI	GCNGC	9 cut(s)	79, 82, 218, 221, 251, 254, 415, 592, 595
BmtI	GCTAGC	1 cut(s)	516
BpmI	CTGGAG	2 cut(s)	504, 511
BsaHI	GRCGYC	2 cut(s)	228, 507
Bsc4I	CCNNNNNNNGG	3 cut(s)	215, 288, 291
Bse118I	RCCGGY	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	494
BseGI	GGATG	3 cut(s)	278, 340, 624
BseLI	CCNNNNNNNGG	3 cut(s)	215, 288, 291
BseNI	ACTGG	1 cut(s)	494
BseRI	GAGGAG	3 cut(s)	274, 341, 344
BseXI	GCAGC	2 cut(s)	400, 577
Bsh1236I	CGCG	3 cut(s)	64, 83, 156
BshFI	GGCC	1 cut(s)	212
BsiSI	CCGG	2 cut(s)	209, 231
BslFI	GGGAC	2 cut(s)	51, 413
BslI	CCNNNNNNNGG	3 cut(s)	215, 288, 291
BsmAI	GTCTC	3 cut(s)	137, 228, 480
BsmBI	CGTCTC	1 cut(s)	137
BsmFI	GGGAC	2 cut(s)	51, 413
BsnI	GGCC	1 cut(s)	212
BspANI	GGCC	1 cut(s)	212
BspFNI	CGCG	3 cut(s)	64, 83, 156
BspOI	GCTAGC	1 cut(s)	516
BspTI	CTTAAG	1 cut(s)	613
BsrBI	CCGCTC	1 cut(s)	200
BsrFI	RCCGGY	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	494
BssAI	RCCGGY	1 cut(s)	208
BssNI	GRCGYC	2 cut(s)	228, 507
Bst4CI	ACNGT	2 cut(s)	150, 317
Bst6I	CTCTTC	2 cut(s)	122, 127
BstACI	GRCGYC	2 cut(s)	228, 507
BstAFI	CTTAAG	1 cut(s)	613
BstC8I	GCNNGC	4 cut(s)	210, 214, 514, 534
BstF5I	GGATG	3 cut(s)	278, 340, 624
BstFNI	CGCG	3 cut(s)	64, 83, 156
BstHHI	GCGC	3 cut(s)	11, 85, 158
BstMAI	GTCTC	3 cut(s)	137, 228, 480
BstMWI	GCNNNNNNNGC	2 cut(s)	513, 542
BstSFI	CTRYAG	1 cut(s)	585
BstUI	CGCG	3 cut(s)	64, 83, 156
BstV1I	GCAGC	2 cut(s)	400, 577
BstXI	CCANNNNNNTGG	1 cut(s)	524
BsuI	GTATCC	1 cut(s)	622
BsuRI	GGCC	1 cut(s)	212
BtsCI	GGATG	3 cut(s)	278, 340, 624
BtsI	GCAGTG	1 cut(s)	603
BtsIMutI	CAGTG	2 cut(s)	529, 603
Cac8I	GCNNGC	4 cut(s)	210, 214, 514, 534
CfoI	GCGC	3 cut(s)	11, 85, 158
Cfr10I	RCCGGY	1 cut(s)	208
CseI	GACGC	4 cut(s)	53, 236, 309, 496
CspCI	CAANNNNNGTGG	2 cut(s)	226, 261
CviAII	CATG	3 cut(s)	87, 288, 299
EaeI	YGGCCR	1 cut(s)	210
Eam1104I	CTCTTC	2 cut(s)	122, 127
EarI	CTCTTC	2 cut(s)	122, 127
Eco57I	CTGAAG	1 cut(s)	420
Esp3I	CGTCTC	1 cut(s)	137
FaeI	CATG	3 cut(s)	90, 291, 302
FaiI	YATR	5 cut(s)	88, 289, 300, 449, 555
FaqI	GGGAC	2 cut(s)	51, 413
FatI	CATG	3 cut(s)	86, 287, 298
Fnu4HI	GCNGC	9 cut(s)	78, 81, 217, 220, 250, 253, 414, 591, 594
FokI	GGATG	3 cut(s)	265, 347, 631
Fsp4HI	GCNGC	9 cut(s)	78, 81, 217, 220, 250, 253, 414, 591, 594
FspBI	CTAG	2 cut(s)	458, 513
GlaI	GCGC	3 cut(s)	10, 84, 157
GluI	GCNGC	9 cut(s)	78, 81, 217, 220, 250, 253, 414, 591, 594
GsuI	CTGGAG	2 cut(s)	504, 511
HaeIII	GGCC	1 cut(s)	212
HapII	CCGG	2 cut(s)	209, 231
HgaI	GACGC	4 cut(s)	53, 236, 309, 496
HhaI	GCGC	3 cut(s)	11, 85, 158
Hin1I	GRCGYC	2 cut(s)	228, 507
Hin1II	CATG	3 cut(s)	90, 291, 302
Hin6I	GCGC	3 cut(s)	9, 83, 156
HinP1I	GCGC	3 cut(s)	9, 83, 156
HinfI	GANTC	3 cut(s)	36, 275, 341
HpaII	CCGG	2 cut(s)	209, 231
HphI	GGTGA	5 cut(s)	19, 132, 152, 181, 367
Hpy166II	GTNNAC	2 cut(s)	27, 372
Hpy188I	TCNGA	2 cut(s)	226, 325
Hpy188III	TCNNGA	3 cut(s)	386, 469, 483
Hpy8I	GTNNAC	2 cut(s)	27, 372
Hpy99I	CGWCG	3 cut(s)	77, 325, 512
HpyAV	CCTTC	1 cut(s)	352
HpyCH4III	ACNGT	2 cut(s)	150, 317
HpyCH4IV	ACGT	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	2 cut(s)	513, 542
HpySE526I	ACGT	1 cut(s)	72
Hsp92I	GRCGYC	2 cut(s)	228, 507
Hsp92II	CATG	3 cut(s)	90, 291, 302
HspAI	GCGC	3 cut(s)	9, 83, 156
KroI	GCCGGC	1 cut(s)	208
KroNI	GCCGGC	1 cut(s)	210
LmnI	GCTCC	1 cut(s)	575
Lsp1109I	GCAGC	2 cut(s)	400, 577
MaeI	CTAG	2 cut(s)	458, 513
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	453
MbiI	CCGCTC	1 cut(s)	200
MboII	GAAGA	2 cut(s)	109, 114
MluCI	AATT	1 cut(s)	601
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	3 cut(s)	239, 303, 541
MroNI	GCCGGC	1 cut(s)	208
MseI	TTAA	2 cut(s)	176, 614
MslI	CAYNNNNRTG	1 cut(s)	292
MspA1I	CMGCKG	2 cut(s)	216, 590
MspCI	CTTAAG	1 cut(s)	613
MspI	CCGG	2 cut(s)	209, 231
MvnI	CGCG	3 cut(s)	64, 83, 156
MwoI	GCNNNNNNNGC	2 cut(s)	513, 542
NaeI	GCCGGC	1 cut(s)	210
NgoMIV	GCCGGC	1 cut(s)	208
NheI	GCTAGC	1 cut(s)	512
NlaIII	CATG	3 cut(s)	90, 291, 302
PdiI	GCCGGC	1 cut(s)	210
PfeI	GAWTC	2 cut(s)	36, 275
PkrI	GCNGC	9 cut(s)	79, 82, 218, 221, 251, 254, 415, 592, 595
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
PvuII	CAGCTG	1 cut(s)	590
RseI	CAYNNNNRTG	1 cut(s)	292
SaqAI	TTAA	2 cut(s)	176, 614
SatI	GCNGC	9 cut(s)	78, 81, 217, 220, 250, 253, 414, 591, 594
SchI	GAGTC	1 cut(s)	350
SetI	ASST	9 cut(s)	58, 75, 165, 357, 381, 442, 580, 592, 635
SfcI	CTRYAG	1 cut(s)	585
SmiMI	CAYNNNNRTG	1 cut(s)	292
SmlI	CTYRAG	1 cut(s)	613
SmoI	CTYRAG	1 cut(s)	613
SpeI	ACTAGT	1 cut(s)	457
Sse9I	AATT	1 cut(s)	601
SspMI	CTAG	2 cut(s)	458, 513
TaaI	ACNGT	2 cut(s)	150, 317
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	1 cut(s)	273
TasI	AATT	1 cut(s)	601
TauI	GCSGC	7 cut(s)	80, 83, 219, 222, 252, 255, 596
TfiI	GAWTC	2 cut(s)	36, 275
Tru1I	TTAA	2 cut(s)	176, 614
Tru9I	TTAA	2 cut(s)	176, 614
TscAI	CASTG	2 cut(s)	529, 603
TseI	GCWGC	2 cut(s)	413, 590
TspDTI	ATGAA	1 cut(s)	267
TspGWI	ACGGA	1 cut(s)	119
TspRI	CASTG	2 cut(s)	529, 603
Vha464I	CTTAAG	1 cut(s)	613
XapI	RAATTY	1 cut(s)	601
XspI	CTAG	2 cut(s)	458, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.