Rmu_ssc0000218.1_g000052

UPF0420 protein C16orf58 homolog

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000218.1
Physical Location & Seq
Forward (+)
216998 .. 220430
3433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000218.1_g000052.1.cds

Sequence Viewer

Length: 1797 bp
atgggttgcgcttccaagtccttgttcacccaaggaagcactatccatttcccacctccaccgcgtccctacgccgccgcgccatgctcctctcctctaaaatcaactccactcttctcttccctccgtctcacttcaccgccacagtttcgctctcacgtcctgccgcctttaaaacacttgctcaccgcacccgctctcctgccggccagcggcggctccgacgccggagacaacaacaatgccggcagcggtggcggttggaacaatccatttgactcatcatcctcatggtggtggcatgacgacaacggtggtggatctcataacctcattttgttctcgtctatattgttggcctccgtggcgtgttgcttgtgccagctcaggctggcgtatgccctagcgtcggaggaggaggatgttgagtctgtgtgggaagtgaagggaggcaagtggacaaagctcgttcctgattttgtgagggacggctttgttgctgccaatggcggtggcttggcttcaataagctttgggagtctttggctgcgatgcaagaatctgtttgtgcaattgatgcttccagaaggctttcctcatagtgttaccagtgattatctggactactctctctggagagcagttcagggcgtcgctagccaagtcagtggtgtgcttgccacacaggctttgctttatgctgttggattagggaaaggagctattcctacagctgcggcggtgaattgggtgcttaaggatgggattggatacctgagcaagattatgctctccaaatatgggaggcattttgatgtcaatccgaaagggtggaggctgtttgctgatcttatggaaaatgctgcttttggaatggaaatgctcactcctgcatttcccaattattttctcttgattggtgctgccgccggcgcagggcgctcagctgctgcacttatccaggctgctaccaggagctgtttctatgctggttttgctgctcagaggaactttgctgaggttattgctaagggtgaagctcagggaatggtgagcaagtttatcggtatcatgcttggtatagcattggctaaccagataggctcttctacgtctcttggcctagcttcttttagtgtggtcacttgcatccacatgttctgcaatctgaaatcgtatcaagccattcaaataaggactttaaatccctatcgtgcaagtttggttttcagcgaatatctacttagtggccaagcacctcctgtcaaagaggtgaacgaggaggaaccgctttttccagctgtaccgtttcttaactggaagccagcaaacagagcaccgccaacagtattatcttcagaagcgaaggatgcagctgctgaaattgagcaaaggctgcagttgggatccaagctcagtgatctaatcaacaacaaggaggatgtgcttgcactgttcattttatttaaagaagaaggctatattttgactgaacacaggggaagatactgtgtggttcttaaagaaacatcttcactacaagacatgctcaaagcagtgttccatgtcaattatctgtattggttggagaagaatgccggatatgaagcaaaaggaacttccattgactgcagaccaggtggaagactggaaatgtctctagattatgtgcggagggagttcgaccacgtcaaaactgatggggaatcagcgggttgggttacagatggtcttattgcaagacctgcacctaatagaattcgtccgggttatgaggcctcatcagttgcttgctga

Protein Analysis

598

Amino Acids

64.66

Weight (kDa)

7.13

Isoelectric Point (pI)

42.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1753
AccBSI CCGCTC 1 cut(s) 197
AccII CGCG 2 cut(s) 64, 80
AclWI GGATC 3 cut(s) 328, 1401, 1414
AcoI YGGCCR 2 cut(s) 207, 1249
AcsI RAATTY 1 cut(s) 1758
AcuI CTGAAG 1 cut(s) 1341
AcyI GRCGYC 2 cut(s) 225, 651
AfaI GTAC 1 cut(s) 1305
AfiI CCNNNNNNNGG 5 cut(s) 212, 294, 409, 801, 936
AflII CTTAAG 1 cut(s) 755
AflIII ACRYGT 1 cut(s) 1155
AgsI TTSAA 2 cut(s) 525, 1190
AjiI CACGTC 2 cut(s) 160, 1690
AjnI CCWGG 3 cut(s) 960, 971, 1636
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
Alw21I GWGCWC 1 cut(s) 1339
Alw26I GTCTC 4 cut(s) 134, 225, 1119, 1662
AlwI GGATC 3 cut(s) 328, 1401, 1414
AlwNI CAGNNNCTG 3 cut(s) 950, 978, 1379
AoxI GGCC 5 cut(s) 207, 357, 1120, 1249, 1776
ApoI RAATTY 1 cut(s) 1758
Asp700I GAANNNNTTC 1 cut(s) 591
AspLEI GCGC 4 cut(s) 11, 82, 935, 942
AsuC2I CCSGG 1 cut(s) 1767
AsuHPI GGTGA 7 cut(s) 19, 129, 178, 754, 1046, 1063, 1285
AsuNHI GCTAGC 1 cut(s) 656
BalI TGGCCA 1 cut(s) 1251
BamHI GGATCC 1 cut(s) 1406
BbsI GAAGAC 1 cut(s) 1651
Bbv12I GWGCWC 1 cut(s) 1339
BbvCI CCTCAGC 1 cut(s) 1017
BccI CCATC 3 cut(s) 755, 1694, 1721
BceAI ACGGC 1 cut(s) 505
BcgI CGANNNNNNTGC 2 cut(s) 1045, 1079
BciT130I CCWGG 3 cut(s) 962, 973, 1638
BciVI GTATCC 1 cut(s) 764
BcnI CCSGG 1 cut(s) 1767
BcoDI GTCTC 4 cut(s) 134, 225, 1119, 1662
BfaI CTAG 4 cut(s) 404, 657, 1124, 1661
BfmI CTRYAG 3 cut(s) 729, 1397, 1630
BfoI RGCGCY 1 cut(s) 943
BfrI CTTAAG 1 cut(s) 755
BfuAI ACCTGC 1 cut(s) 1753
BfuI GTATCC 1 cut(s) 764
BglI GCCNNNNNGGC 2 cut(s) 365, 686
BlpI GCTNAGC 1 cut(s) 943
Bme1390I CCNGG 4 cut(s) 962, 973, 1638, 1767
BmgBI CACGTC 2 cut(s) 160, 1690
BmiI GGNNCC 3 cut(s) 220, 1287, 1408
BmrFI CCNGG 4 cut(s) 962, 973, 1638, 1767
BmsI GCATC 4 cut(s) 542, 567, 1158, 1360
BmtI GCTAGC 1 cut(s) 660
BpiI GAAGAC 1 cut(s) 1651
BpmI CTGGAG 1 cut(s) 655
Bpu10I CCTNAGC 5 cut(s) 386, 776, 1017, 1029, 1041
Bpu1102I GCTNAGC 1 cut(s) 943
BpuMI CCSGG 1 cut(s) 1767
BsaBI GATNNNNATC 1 cut(s) 819
BsaHI GRCGYC 2 cut(s) 225, 651
BsaJI CCNNGG 2 cut(s) 31, 363
BsaXI ACNNNNNCTCC 2 cut(s) 183, 213
Bsc4I CCNNNNNNNGG 5 cut(s) 212, 294, 409, 801, 936
Bse118I RCCGGY 3 cut(s) 205, 245, 929
Bse1I ACTGG 3 cut(s) 609, 1322, 1653
Bse8I GATNNNNATC 1 cut(s) 819
BseBI CCWGG 3 cut(s) 962, 973, 1638
BseDI CCNNGG 2 cut(s) 31, 363
BseGI GGATG 6 cut(s) 284, 427, 766, 1149, 1375, 1447
BseJI GATNNNNATC 1 cut(s) 819
BseLI CCNNNNNNNGG 5 cut(s) 212, 294, 409, 801, 936
BseMII CTCAG 7 cut(s) 400, 767, 957, 1008, 1016, 1055, 1429
BseNI ACTGG 3 cut(s) 609, 1322, 1653
BseRI GAGGAG 5 cut(s) 79, 84, 428, 431, 1295
BsgI GTGCAG 2 cut(s) 936, 1731
Bsh1236I CGCG 2 cut(s) 64, 80
BshFI GGCC 5 cut(s) 209, 359, 1122, 1251, 1778
BsiHKAI GWGCWC 1 cut(s) 1339
BsiSI CCGG 6 cut(s) 206, 228, 246, 930, 1599, 1766
BslFI GGGAC 2 cut(s) 51, 500
BslI CCNNNNNNNGG 5 cut(s) 212, 294, 409, 801, 936
BsmAI GTCTC 4 cut(s) 134, 225, 1119, 1662
BsmBI CGTCTC 2 cut(s) 134, 1119
BsmFI GGGAC 2 cut(s) 51, 500
BsmI GAATGC 1 cut(s) 1600
BsnI GGCC 5 cut(s) 209, 359, 1122, 1251, 1778
Bsp1286I GDGCHC 1 cut(s) 1339
Bsp143I GATC 4 cut(s) 320, 847, 1406, 1420
Bsp1720I GCTNAGC 1 cut(s) 943
BspANI GGCC 5 cut(s) 209, 359, 1122, 1251, 1778
BspCNI CTCAG 7 cut(s) 399, 768, 956, 1009, 1015, 1054, 1428
BspFNI CGCG 2 cut(s) 64, 80
BspLI GGNNCC 3 cut(s) 220, 1287, 1408
BspMAI CTGCAG 2 cut(s) 1401, 1634
BspMI ACCTGC 1 cut(s) 1753
BspOI GCTAGC 1 cut(s) 660
BspPI GGATC 3 cut(s) 328, 1401, 1414
BspQI GCTCTTC 1 cut(s) 1111
BspTI CTTAAG 1 cut(s) 755
BsrBI CCGCTC 1 cut(s) 197
BsrFI RCCGGY 3 cut(s) 205, 245, 929
BsrI ACTGG 3 cut(s) 609, 1322, 1653
BssAI RCCGGY 3 cut(s) 205, 245, 929
BssECI CCNNGG 2 cut(s) 31, 363
BssMI GATC 4 cut(s) 320, 847, 1406, 1420
BssNI GRCGYC 2 cut(s) 225, 651
BssT1I CCWWGG 1 cut(s) 31
Bst2UI CCWGG 3 cut(s) 962, 973, 1638
Bst4CI ACNGT 6 cut(s) 147, 314, 1308, 1348, 1455, 1511
Bst6I CTCTTC 3 cut(s) 119, 124, 1111
BstACI GRCGYC 2 cut(s) 225, 651
BstAFI CTTAAG 1 cut(s) 755
BstAPI GCANNNNNTGC 3 cut(s) 577, 1396, 1745
BstDEI CTNAG 9 cut(s) 386, 776, 943, 1002, 1017, 1029, 1041, 1244, 1415
BstDSI CCRYGG 1 cut(s) 363
BstF5I GGATG 6 cut(s) 284, 427, 766, 1149, 1375, 1447
BstFNI CGCG 2 cut(s) 64, 80
BstH2I RGCGCY 1 cut(s) 943
BstHHI GCGC 4 cut(s) 11, 82, 935, 942
BstKTI GATC 4 cut(s) 323, 850, 1409, 1423
BstMAI GTCTC 4 cut(s) 134, 225, 1119, 1662
BstMBI GATC 4 cut(s) 320, 847, 1406, 1420
BstNI CCWGG 3 cut(s) 962, 973, 1638
BstNSI RCATGY 2 cut(s) 1159, 1549
BstSCI CCNGG 4 cut(s) 960, 971, 1636, 1765
BstSFI CTRYAG 3 cut(s) 729, 1397, 1630
BstUI CGCG 2 cut(s) 64, 80
BstV2I GAAGAC 1 cut(s) 1651
BstX2I RGATCY 2 cut(s) 320, 1406
BstXI CCANNNNNNTGG 1 cut(s) 668
BstYI RGATCY 2 cut(s) 320, 1406
BsuI GTATCC 1 cut(s) 764
BsuRI GGCC 5 cut(s) 209, 359, 1122, 1251, 1778
BtgI CCRYGG 1 cut(s) 363
BtgZI GCGATG 1 cut(s) 565
BtrI CACGTC 2 cut(s) 160, 1690
BtsCI GGATG 6 cut(s) 284, 427, 766, 1149, 1375, 1447
BtsI GCAGTG 1 cut(s) 1563
BtsIMutI CAGTG 5 cut(s) 616, 673, 1423, 1451, 1563
BveI ACCTGC 1 cut(s) 1753
CaiI CAGNNNCTG 3 cut(s) 950, 978, 1379
CfoI GCGC 4 cut(s) 11, 82, 935, 942
Cfr10I RCCGGY 3 cut(s) 205, 245, 929
CseI GACGC 4 cut(s) 53, 233, 396, 640
CsiI ACCWGGT 1 cut(s) 1636
Csp6I GTAC 1 cut(s) 1304
CspCI CAANNNNNGTGG 4 cut(s) 298, 333, 493, 528
CviAII CATG 7 cut(s) 84, 291, 302, 1072, 1156, 1546, 1565
CviQI GTAC 1 cut(s) 1304
DdeI CTNAG 9 cut(s) 386, 776, 943, 1002, 1017, 1029, 1041, 1244, 1415
DpnI GATC 4 cut(s) 322, 849, 1408, 1422
DpnII GATC 4 cut(s) 320, 847, 1406, 1420
DraI TTTAAA 3 cut(s) 174, 1203, 1468
EaeI YGGCCR 2 cut(s) 207, 1249
Eam1104I CTCTTC 3 cut(s) 119, 124, 1111
EarI CTCTTC 3 cut(s) 119, 124, 1111
Eco130I CCWWGG 1 cut(s) 31
Eco147I AGGCCT 1 cut(s) 1778
Eco57I CTGAAG 1 cut(s) 1341
EcoRI GAATTC 1 cut(s) 1758
EcoRII CCWGG 3 cut(s) 960, 971, 1636
EcoT14I CCWWGG 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 31
Esp3I CGTCTC 2 cut(s) 134, 1119
FaeI CATG 7 cut(s) 87, 294, 305, 1075, 1159, 1549, 1568
FaqI GGGAC 2 cut(s) 51, 500
FatI CATG 7 cut(s) 83, 290, 301, 1071, 1155, 1545, 1564
FauI CCCGC 2 cut(s) 202, 1705
FokI GGATG 6 cut(s) 271, 434, 773, 1136, 1382, 1454
FspBI CTAG 4 cut(s) 404, 657, 1124, 1661
GlaI GCGC 4 cut(s) 10, 81, 934, 941
GsuI CTGGAG 1 cut(s) 655
HaeII RGCGCY 1 cut(s) 943
HaeIII GGCC 5 cut(s) 209, 359, 1122, 1251, 1778
HapII CCGG 6 cut(s) 206, 228, 246, 930, 1599, 1766
HgaI GACGC 4 cut(s) 53, 233, 396, 640
HhaI GCGC 4 cut(s) 11, 82, 935, 942
Hin1I GRCGYC 2 cut(s) 225, 651
Hin1II CATG 7 cut(s) 87, 294, 305, 1075, 1159, 1549, 1568
Hin6I GCGC 4 cut(s) 9, 80, 933, 940
HinP1I GCGC 4 cut(s) 9, 80, 933, 940
HindIII AAGCTT 1 cut(s) 529
HinfI GANTC 5 cut(s) 278, 428, 538, 559, 1706
HpaII CCGG 6 cut(s) 206, 228, 246, 930, 1599, 1766
HphI GGTGA 7 cut(s) 19, 129, 178, 754, 1046, 1063, 1285
Hpy166II GTNNAC 3 cut(s) 27, 459, 1276
Hpy188I TCNGA 6 cut(s) 223, 412, 825, 1005, 1170, 1360
Hpy188III TCNNGA 6 cut(s) 473, 584, 620, 634, 913, 1661
Hpy8I GTNNAC 3 cut(s) 27, 459, 1276
Hpy99I CGWCG 3 cut(s) 227, 412, 656
HpyAV CCTTC 4 cut(s) 439, 581, 1360, 1469
HpyCH4III ACNGT 6 cut(s) 147, 314, 1308, 1348, 1455, 1511
HpyCH4IV ACGT 3 cut(s) 159, 1112, 1689
HpyF3I CTNAG 9 cut(s) 386, 776, 943, 1002, 1017, 1029, 1041, 1244, 1415
HpySE526I ACGT 3 cut(s) 159, 1112, 1689
Hsp92I GRCGYC 2 cut(s) 225, 651
Hsp92II CATG 7 cut(s) 87, 294, 305, 1075, 1159, 1549, 1568
HspAI GCGC 4 cut(s) 9, 80, 933, 940
KroI GCCGGC 3 cut(s) 205, 245, 929
KroNI GCCGGC 3 cut(s) 207, 247, 931
Kzo9I GATC 4 cut(s) 320, 847, 1406, 1420
LguI GCTCTTC 1 cut(s) 1111
LmnI GCTCC 4 cut(s) 92, 224, 719, 975
LweI GCATC 4 cut(s) 542, 567, 1158, 1360
MabI ACCWGGT 1 cut(s) 1636
MaeI CTAG 4 cut(s) 404, 657, 1124, 1661
MaeII ACGT 3 cut(s) 159, 1112, 1689
MaeIII GTNAC 3 cut(s) 604, 1141, 1720
MalI GATC 4 cut(s) 322, 849, 1408, 1422
MbiI CCGCTC 1 cut(s) 197
MboI GATC 4 cut(s) 320, 847, 1406, 1420
MboII GAAGA 9 cut(s) 106, 111, 1098, 1347, 1484, 1515, 1524, 1603, 1656
MfeI CAATTG 1 cut(s) 572
MflI RGATCY 2 cut(s) 320, 1406
MhlI GDGCHC 1 cut(s) 1339
MlsI TGGCCA 1 cut(s) 1251
MluCI AATT 6 cut(s) 572, 745, 901, 1383, 1570, 1758
MluNI TGGCCA 1 cut(s) 1251
MlyI GAGTC 3 cut(s) 272, 437, 547
MmeI TCCRAC 5 cut(s) 242, 246, 390, 685, 1566
Mox20I TGGCCA 1 cut(s) 1251
MreI CGCCGGCG 1 cut(s) 929
MroNI GCCGGC 3 cut(s) 205, 245, 929
MroXI GAANNNNTTC 1 cut(s) 591
MscI TGGCCA 1 cut(s) 1251
MseI TTAA 6 cut(s) 173, 756, 1202, 1314, 1467, 1521
MslI CAYNNNNRTG 4 cut(s) 289, 295, 813, 1154
Msp20I TGGCCA 1 cut(s) 1251
MspA1I CMGCKG 7 cut(s) 213, 252, 734, 947, 1301, 1376, 1712
MspCI CTTAAG 1 cut(s) 755
MspI CCGG 6 cut(s) 206, 228, 246, 930, 1599, 1766
MspR9I CCNGG 4 cut(s) 962, 973, 1638, 1767
MunI CAATTG 1 cut(s) 572
Mva1269I GAATGC 1 cut(s) 1600
MvaI CCWGG 3 cut(s) 962, 973, 1638
MvnI CGCG 2 cut(s) 64, 80
NaeI GCCGGC 3 cut(s) 207, 247, 931
NciI CCSGG 1 cut(s) 1767
NdeII GATC 4 cut(s) 320, 847, 1406, 1420
NgoMIV GCCGGC 3 cut(s) 205, 245, 929
NheI GCTAGC 1 cut(s) 656
NlaIII CATG 7 cut(s) 87, 294, 305, 1075, 1159, 1549, 1568
NlaIV GGNNCC 3 cut(s) 220, 1287, 1408
NmuCI GTSAC 1 cut(s) 1141
NspI RCATGY 2 cut(s) 1159, 1549
PceI AGGCCT 1 cut(s) 1778
PciI ACATGT 1 cut(s) 1155
PciSI GCTCTTC 1 cut(s) 1111
PctI GAATGC 1 cut(s) 1600
PdiI GCCGGC 3 cut(s) 207, 247, 931
PdmI GAANNNNTTC 1 cut(s) 591
PfeI GAWTC 2 cut(s) 559, 1706
PflFI GACNNNGTC 1 cut(s) 1688
PleI GAGTC 3 cut(s) 272, 436, 546
PpsI GAGTC 3 cut(s) 272, 436, 546
PscI ACATGT 1 cut(s) 1155
Psp6I CCWGG 3 cut(s) 960, 971, 1636
PspGI CCWGG 3 cut(s) 960, 971, 1636
PspN4I GGNNCC 3 cut(s) 220, 1287, 1408
PstI CTGCAG 2 cut(s) 1401, 1634
PstNI CAGNNNCTG 3 cut(s) 950, 978, 1379
PsuI RGATCY 2 cut(s) 320, 1406
PsyI GACNNNGTC 1 cut(s) 1688
PvuII CAGCTG 4 cut(s) 734, 947, 1301, 1376
RsaI GTAC 1 cut(s) 1305
RsaNI GTAC 1 cut(s) 1304
RseI CAYNNNNRTG 4 cut(s) 289, 295, 813, 1154
SapI GCTCTTC 1 cut(s) 1111
SaqAI TTAA 6 cut(s) 173, 756, 1202, 1314, 1467, 1521
Sau3AI GATC 4 cut(s) 320, 847, 1406, 1420
SchI GAGTC 3 cut(s) 272, 437, 547
ScrFI CCNGG 4 cut(s) 962, 973, 1638, 1767
SduI GDGCHC 1 cut(s) 1339
SexAI ACCWGGT 1 cut(s) 1636
SfaNI GCATC 4 cut(s) 542, 567, 1158, 1360
SfcI CTRYAG 3 cut(s) 729, 1397, 1630
SgrAI CRCCGGYG 1 cut(s) 929
SmiMI CAYNNNNRTG 4 cut(s) 289, 295, 813, 1154
SmlI CTYRAG 1 cut(s) 755
SmoI CTYRAG 1 cut(s) 755
Sse9I AATT 6 cut(s) 572, 745, 901, 1383, 1570, 1758
SseBI AGGCCT 1 cut(s) 1778
SspMI CTAG 4 cut(s) 404, 657, 1124, 1661
StuI AGGCCT 1 cut(s) 1778
StyD4I CCNGG 4 cut(s) 960, 971, 1636, 1765
StyI CCWWGG 1 cut(s) 31
TaaI ACNGT 6 cut(s) 147, 314, 1308, 1348, 1455, 1511
TaiI ACGT 3 cut(s) 162, 1115, 1692
TaqI TCGA 1 cut(s) 1683
TasI AATT 6 cut(s) 572, 745, 901, 1383, 1570, 1758
TauI GCSGC 7 cut(s) 77, 80, 169, 216, 219, 740, 929
TfiI GAWTC 2 cut(s) 559, 1706
Tru1I TTAA 6 cut(s) 173, 756, 1202, 1314, 1467, 1521
Tru9I TTAA 6 cut(s) 173, 756, 1202, 1314, 1467, 1521
TscAI CASTG 5 cut(s) 616, 673, 1423, 1458, 1563
TseFI GTSAC 1 cut(s) 1141
Tsp45I GTSAC 1 cut(s) 1141
TspDTI ATGAA 2 cut(s) 1447, 1620
TspGWI ACGGA 2 cut(s) 116, 352
TspRI CASTG 5 cut(s) 616, 673, 1423, 1458, 1563
Tth111I GACNNNGTC 1 cut(s) 1688
Vha464I CTTAAG 1 cut(s) 755
XapI RAATTY 1 cut(s) 1758
XbaI TCTAGA 1 cut(s) 1660
XceI RCATGY 2 cut(s) 1159, 1549
XcmI CCANNNNNNNNNTGG 1 cut(s) 616
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 4 cut(s) 404, 657, 1124, 1661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.