Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005802

Physical Location & Seq

Genomic Coordinates Forward (+)

16968423 .. 16971321

Gene Structure 2899 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G46200.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGCGAAACTAGCAGAAGAGATGAATCCTGAAGGTTCACGATACCAGCTTCTTCTCTCATGTCCTTCTGGCCTCTCTCCGTCTCAGGTCTCAGTGGATTTCTCGAAATCGCATGATCGGATTCCTCGTCAAGATCCTGGTCTAGAAGATTCTATTTCACAGGTTTGGGAGCAGAGATCACAGGGAAATTCATCATTGTTCAATGGCCAAAAATTTAGGTATGGAGGATATTGTTTAGATGATGATGATGGTAGTACCAATGAAGTGCCACACGTTTGTCTTCGTCTTGGCCTGACAGATTACAGGACTTTTGTAGGAACGAATTTGAGTTCTCTGTGGGAGAAGTTCCTTGTTACATCAGAAGATGACTCTGTTAGATGTCGACACACCTCAAGTCCATTGGGAAATGGTGCAGTTATCGAAACTTCTGATAAGAAGATTATTGTGTTACGTCGGAGTAATAATGTTGGGGAATTTCCAGGACACTATGTATTCCCTGGGGGCCATCCAGAGCCAACAGCAGTAGGTATTGATTATCATCAGCTTGAAAACAATGTTCAAACCGGTGAGGTTTTAAACAAGAAGGTAACTCAAGAAATGTTTGATAGCATTATCTGTGAAGTTGTCGAAGAAACTGGAATACCAGCATCATCACTTAGCTCGCCTCTCTTCATCGGTATATCTCGAAGGGAGTTGAATGTAAGACCAGCTATGTTTTTCTACCTCAAGTGTAGTCATCATTCAGATGACATTCAAAGATTATACTCTAGCGCTGAAGATGGGTTCGAGTCAACACAGCTCCACACTGTCTCATTGGATGAGCTGAAGATGATGACATCGAGAATGCCAGGTTGCCATCATGGCGGATTCGCTCTCTACGAACTGATGCTTCAACGTCTCAAGAACACTAAGGAAACGTCTTTAATAGCAACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0052751 GO:0060359 GO:0070887 GO:0071242 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

311

Amino Acids

34.72

Weight (kDa)

5.38

Isoelectric Point (pI)

47.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46200 AT3G46200 AT3G46200 AT3G46200 AT3G46200 AT3G46200
fragaria_vesca	FvH4_3g34680 FvH4_3g34680 FvH4_3g34680 FvH4_3g34680
malus_domestica	MD03G1102800.v1.1 MD11G1116600.v1.1
prunus_persica	Prupe.6G086900_v2.0.a1 Prupe.6G086900_v2.0.a1 Prupe.6G086900_v2.0.a1
pyrus_communis	pycom11g09800
rosa_chinensis	RchiOBHm_Chr5g0062361
rosa_laevigata	RLG00000035553
rosa_multiflora	Rmu_sc0005798.1_g000001 Rmu_sc0018052.1_g000006 Rmu_sc0019705.1_g000003
rosa_roxburghii	Rroxscaffold_1G00018320
rosa_rugosa	Rorug05G0349000
rosa_samantha	Rh5AG408900 Rh5BG422900 Rh5CG446900 Rh5DG437700
rosa_wichuraiana	Rw5G038530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	382
AciI	CCGC	1 cut(s)	864
AclWI	GGATC	1 cut(s)	128
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	4 cut(s)	187, 212, 322, 473
AcuI	CTGAAG	3 cut(s)	51, 795, 845
AfaI	GTAC	1 cut(s)	256
AfeI	AGCGCT	1 cut(s)	772
AflIII	ACRYGT	1 cut(s)	271
AgeI	ACCGGT	1 cut(s)	563
AgsI	TTSAA	6 cut(s)	202, 548, 560, 697, 755, 893
AjnI	CCWGG	4 cut(s)	136, 478, 496, 847
AluBI	AGCT	6 cut(s)	49, 544, 660, 710, 799, 823
AluI	AGCT	6 cut(s)	49, 544, 660, 710, 799, 823
Alw26I	GTCTC	4 cut(s)	87, 94, 814, 902
AlwI	GGATC	1 cut(s)	128
Aor51HI	AGCGCT	1 cut(s)	772
AoxI	GGCC	4 cut(s)	70, 205, 289, 502
ApoI	RAATTY	4 cut(s)	187, 212, 322, 473
AsiGI	ACCGGT	1 cut(s)	563
AspLEI	GCGC	1 cut(s)	773
AspS9I	GGNCC	1 cut(s)	502
AsuHPI	GGTGA	1 cut(s)	578
BalI	TGGCCA	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	272
BccI	CCATC	4 cut(s)	242, 513, 773, 864
BciT130I	CCWGG	4 cut(s)	138, 480, 498, 849
BcoDI	GTCTC	4 cut(s)	87, 94, 814, 902
BfaI	CTAG	3 cut(s)	11, 143, 768
BfoI	RGCGCY	1 cut(s)	774
BglI	GCCNNNNNGGC	1 cut(s)	861
Bme1390I	CCNGG	4 cut(s)	138, 480, 498, 849
BmgT120I	GGNCC	1 cut(s)	502
BmiI	GGNNCC	1 cut(s)	503
BmrFI	CCNGG	4 cut(s)	138, 480, 498, 849
BmsI	GCATC	2 cut(s)	656, 876
BpiI	GAAGAC	1 cut(s)	272
BpuEI	CTTGAG	4 cut(s)	376, 576, 710, 884
BsaBI	GATNNNNATC	1 cut(s)	537
BsaI	GGTCTC	1 cut(s)	94
BsaJI	CCNNGG	2 cut(s)	496, 497
BsaWI	WCCGGW	1 cut(s)	563
Bse118I	RCCGGY	1 cut(s)	563
Bse1I	ACTGG	1 cut(s)	640
Bse8I	GATNNNNATC	1 cut(s)	537
BseBI	CCWGG	4 cut(s)	138, 480, 498, 849
BseDI	CCNNGG	2 cut(s)	496, 497
BseGI	GGATG	2 cut(s)	505, 823
BseJI	GATNNNNATC	1 cut(s)	537
BseMII	CTCAG	2 cut(s)	98, 105
BseNI	ACTGG	1 cut(s)	640
BsgI	GTGCAG	1 cut(s)	432
BshFI	GGCC	4 cut(s)	72, 207, 291, 504
BshTI	ACCGGT	1 cut(s)	563
BsiSI	CCGG	1 cut(s)	564
BsmAI	GTCTC	4 cut(s)	87, 94, 814, 902
BsmBI	CGTCTC	2 cut(s)	87, 902
BsmI	GAATGC	1 cut(s)	849
BsnI	GGCC	4 cut(s)	72, 207, 291, 504
Bso31I	GGTCTC	1 cut(s)	94
Bsp143I	GATC	3 cut(s)	115, 133, 176
BspACI	CCGC	1 cut(s)	864
BspANI	GGCC	4 cut(s)	72, 207, 291, 504
BspCNI	CTCAG	2 cut(s)	97, 104
BspLI	GGNNCC	1 cut(s)	503
BspPI	GGATC	1 cut(s)	128
BspTNI	GGTCTC	1 cut(s)	94
BsrFI	RCCGGY	1 cut(s)	563
BsrI	ACTGG	1 cut(s)	640
BssAI	RCCGGY	1 cut(s)	563
BssECI	CCNNGG	2 cut(s)	496, 497
BssMI	GATC	3 cut(s)	115, 133, 176
Bst2UI	CCWGG	4 cut(s)	138, 480, 498, 849
Bst4CI	ACNGT	1 cut(s)	808
Bst6I	CTCTTC	2 cut(s)	12, 674
BstC8I	GCNNGC	1 cut(s)	662
BstDEI	CTNAG	4 cut(s)	84, 91, 656, 909
BstF5I	GGATG	2 cut(s)	505, 823
BstH2I	RGCGCY	1 cut(s)	774
BstHHI	GCGC	1 cut(s)	773
BstKTI	GATC	3 cut(s)	118, 136, 179
BstMAI	GTCTC	4 cut(s)	87, 94, 814, 902
BstMBI	GATC	3 cut(s)	115, 133, 176
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 861
BstNI	CCWGG	4 cut(s)	138, 480, 498, 849
BstSCI	CCNGG	4 cut(s)	136, 478, 496, 847
BstV2I	GAAGAC	1 cut(s)	272
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BsuRI	GGCC	4 cut(s)	72, 207, 291, 504
BtsCI	GGATG	2 cut(s)	505, 823
BtsIMutI	CAGTG	2 cut(s)	99, 804
Cac8I	GCNNGC	1 cut(s)	662
CfoI	GCGC	1 cut(s)	773
Cfr10I	RCCGGY	1 cut(s)	563
Cfr13I	GGNCC	1 cut(s)	502
Csp6I	GTAC	1 cut(s)	255
CspAI	ACCGGT	1 cut(s)	563
CviAII	CATG	3 cut(s)	60, 113, 860
CviQI	GTAC	1 cut(s)	255
DdeI	CTNAG	4 cut(s)	84, 91, 656, 909
DpnI	GATC	3 cut(s)	117, 135, 178
DpnII	GATC	3 cut(s)	115, 133, 176
DraI	TTTAAA	1 cut(s)	576
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	2 cut(s)	12, 674
EarI	CTCTTC	2 cut(s)	12, 674
EciI	GGCGGA	1 cut(s)	879
Eco31I	GGTCTC	1 cut(s)	94
Eco47III	AGCGCT	1 cut(s)	772
Eco57I	CTGAAG	3 cut(s)	51, 795, 845
EcoRII	CCWGG	4 cut(s)	136, 478, 496, 847
Esp3I	CGTCTC	2 cut(s)	87, 902
FaeI	CATG	3 cut(s)	63, 116, 863
FaiI	YATR	8 cut(s)	61, 114, 222, 489, 680, 713, 763, 861
FatI	CATG	3 cut(s)	59, 112, 859
FblI	GTMKAC	1 cut(s)	382
FokI	GGATG	2 cut(s)	492, 830
FspBI	CTAG	3 cut(s)	11, 143, 768
GlaI	GCGC	1 cut(s)	772
HaeII	RGCGCY	1 cut(s)	774
HaeIII	GGCC	4 cut(s)	72, 207, 291, 504
HapII	CCGG	1 cut(s)	564
HhaI	GCGC	1 cut(s)	773
Hin1II	CATG	3 cut(s)	63, 116, 863
Hin6I	GCGC	1 cut(s)	771
HinP1I	GCGC	1 cut(s)	771
HincII	GTYRAC	2 cut(s)	383, 792
HindII	GTYRAC	2 cut(s)	383, 792
HinfI	GANTC	6 cut(s)	25, 121, 149, 368, 788, 867
HpaII	CCGG	1 cut(s)	564
HphI	GGTGA	1 cut(s)	578
Hpy166II	GTNNAC	3 cut(s)	38, 383, 792
Hpy188I	TCNGA	5 cut(s)	120, 361, 430, 456, 745
Hpy8I	GTNNAC	3 cut(s)	38, 383, 792
Hpy99I	CGWCG	1 cut(s)	456
HpyAV	CCTTC	4 cut(s)	26, 75, 577, 681
HpyCH4III	ACNGT	1 cut(s)	808
HpyCH4IV	ACGT	5 cut(s)	273, 451, 895, 917, 932
HpyCH4V	TGCA	1 cut(s)	413
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 861
HpyF3I	CTNAG	4 cut(s)	84, 91, 656, 909
HpySE526I	ACGT	5 cut(s)	273, 451, 895, 917, 932
Hsp92II	CATG	3 cut(s)	63, 116, 863
HspAI	GCGC	1 cut(s)	771
Kzo9I	GATC	3 cut(s)	115, 133, 176
LmnI	GCTCC	2 cut(s)	169, 804
LweI	GCATC	2 cut(s)	656, 876
MaeI	CTAG	3 cut(s)	11, 143, 768
MaeII	ACGT	5 cut(s)	273, 451, 895, 917, 932
MaeIII	GTNAC	3 cut(s)	352, 447, 586
MalI	GATC	3 cut(s)	117, 135, 178
MboI	GATC	3 cut(s)	115, 133, 176
MflI	RGATCY	1 cut(s)	133
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	4 cut(s)	187, 212, 322, 473
MluNI	TGGCCA	1 cut(s)	207
MlyI	GAGTC	2 cut(s)	362, 797
MmeI	TCCRAC	1 cut(s)	434
MnlI	CCTC	7 cut(s)	83, 135, 218, 400, 562, 675, 734
Mox20I	TGGCCA	1 cut(s)	207
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	2 cut(s)	575, 923
MslI	CAYNNNNRTG	1 cut(s)	744
Msp20I	TGGCCA	1 cut(s)	207
MspI	CCGG	1 cut(s)	564
MspR9I	CCNGG	4 cut(s)	138, 480, 498, 849
Mva1269I	GAATGC	1 cut(s)	849
MvaI	CCWGG	4 cut(s)	138, 480, 498, 849
MwoI	GCNNNNNNNGC	2 cut(s)	11, 861
NdeII	GATC	3 cut(s)	115, 133, 176
NlaIII	CATG	3 cut(s)	63, 116, 863
NlaIV	GGNNCC	1 cut(s)	503
PasI	CCCWGGG	1 cut(s)	497
PcsI	WCGNNNNNNNCGW	2 cut(s)	124, 876
PctI	GAATGC	1 cut(s)	849
PfeI	GAWTC	4 cut(s)	25, 121, 149, 867
PfoI	TCCNGGA	1 cut(s)	478
PinAI	ACCGGT	1 cut(s)	563
PleI	GAGTC	2 cut(s)	362, 796
PpsI	GAGTC	2 cut(s)	362, 796
Psp6I	CCWGG	4 cut(s)	136, 478, 496, 847
PspGI	CCWGG	4 cut(s)	136, 478, 496, 847
PspN4I	GGNNCC	1 cut(s)	503
PspPI	GGNCC	1 cut(s)	502
PsuI	RGATCY	1 cut(s)	133
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
RseI	CAYNNNNRTG	1 cut(s)	744
SalI	GTCGAC	1 cut(s)	381
SaqAI	TTAA	2 cut(s)	575, 923
Sau3AI	GATC	3 cut(s)	115, 133, 176
Sau96I	GGNCC	1 cut(s)	502
SchI	GAGTC	2 cut(s)	362, 797
ScrFI	CCNGG	4 cut(s)	138, 480, 498, 849
SfaNI	GCATC	2 cut(s)	656, 876
SmiMI	CAYNNNNRTG	1 cut(s)	744
SmlI	CTYRAG	4 cut(s)	391, 591, 725, 899
SmoI	CTYRAG	4 cut(s)	391, 591, 725, 899
Sse9I	AATT	4 cut(s)	187, 212, 322, 473
SsiI	CCGC	1 cut(s)	864
SspMI	CTAG	3 cut(s)	11, 143, 768
StyD4I	CCNGG	4 cut(s)	136, 478, 496, 847
TaaI	ACNGT	1 cut(s)	808
TaiI	ACGT	5 cut(s)	276, 454, 898, 920, 935
TaqI	TCGA	7 cut(s)	104, 382, 420, 627, 685, 786, 839
TasI	AATT	4 cut(s)	187, 212, 322, 473
TfiI	GAWTC	4 cut(s)	25, 121, 149, 867
Tru1I	TTAA	2 cut(s)	575, 923
Tru9I	TTAA	2 cut(s)	575, 923
TscAI	CASTG	2 cut(s)	99, 811
TspDTI	ATGAA	4 cut(s)	38, 180, 276, 661
TspGWI	ACGGA	1 cut(s)	69
TspRI	CASTG	2 cut(s)	99, 811
XapI	RAATTY	4 cut(s)	187, 212, 322, 473
XbaI	TCTAGA	1 cut(s)	142
XmiI	GTMKAC	1 cut(s)	382
XspI	CTAG	3 cut(s)	11, 143, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.