Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005798.1

Orthogroup ID

OG0005802

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1802

Gene Structure 1802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005798.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atggagaatgcagagactgaagcggaaacgacgccgtacaagcttctgctctcttgcccatctggtctttcgccatcacaggtctctgtggttttcgacgaactatatgaccgaatcccccatccagatatcaacttggagaattctatttctgagatatgggaccaaagggttcagaaaaatccatcgttgtacaacggaacaaagttcaggcatggacatcatatatggcatgatggaggacctaaccaagagtcccatgtatgcctccaccttggtctgacagattataggacttttgtgggaacaaacttaaatcctttatgggaaatgttcctagctccatcagaagatgatgctatacgatgtcagcacacctcaagtccgttgggtaatgctgctattgtggagacatctgacaagaaaattcttgtgttgcaaagaagtcacaatgttggggaatttcctggacactttgttttcccaggaggccatccagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0052751 GO:0060359 GO:0070887 GO:0071242 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.75

Weight (kDa)

5.35

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46200 AT3G46200 AT3G46200 AT3G46200 AT3G46200 AT3G46200
fragaria_vesca	FvH4_3g34680 FvH4_3g34680 FvH4_3g34680 FvH4_3g34680
malus_domestica	MD03G1102800.v1.1 MD11G1116600.v1.1
prunus_persica	Prupe.6G086900_v2.0.a1 Prupe.6G086900_v2.0.a1 Prupe.6G086900_v2.0.a1
pyrus_communis	pycom11g09800
rosa_chinensis	RchiOBHm_Chr5g0062361
rosa_laevigata	RLG00000035553
rosa_multiflora	Rmu_sc0005798.1_g000001 Rmu_sc0018052.1_g000006 Rmu_sc0019705.1_g000003
rosa_roxburghii	Rroxscaffold_1G00018320
rosa_rugosa	Rorug05G0349000
rosa_samantha	Rh5AG408900 Rh5BG422900 Rh5CG446900 Rh5DG437700
rosa_wichuraiana	Rw5G038530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	23
AcsI	RAATTY	3 cut(s)	142, 426, 461
AcuI	CTGAAG	1 cut(s)	39
AcyI	GRCGYC	1 cut(s)	32
AfaI	GTAC	2 cut(s)	38, 194
AjnI	CCWGG	2 cut(s)	466, 484
AluBI	AGCT	2 cut(s)	43, 341
AluI	AGCT	2 cut(s)	43, 341
Alw26I	GTCTC	3 cut(s)	8, 88, 404
AlwNI	CAGNNNCTG	1 cut(s)	17
AoxI	GGCC	1 cut(s)	490
ApeKI	GCWGC	1 cut(s)	398
ApoI	RAATTY	3 cut(s)	142, 426, 461
AspS9I	GGNCC	2 cut(s)	163, 242
AvaII	GGWCC	2 cut(s)	163, 242
BbvI	GCAGC	1 cut(s)	385
BccI	CCATC	6 cut(s)	67, 82, 129, 193, 230, 352
BceAI	ACGGC	1 cut(s)	19
BciT130I	CCWGG	2 cut(s)	468, 486
BcoDI	GTCTC	3 cut(s)	8, 88, 404
BfaI	CTAG	1 cut(s)	338
BisI	GCNGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	400
Bme1390I	CCNGG	2 cut(s)	468, 486
Bme18I	GGWCC	2 cut(s)	163, 242
BmgT120I	GGNCC	2 cut(s)	163, 242
BmiI	GGNNCC	1 cut(s)	164
BmrFI	CCNGG	2 cut(s)	468, 486
BmsI	GCATC	1 cut(s)	346
BpuEI	CTTGAG	1 cut(s)	364
BsaHI	GRCGYC	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	88
BsaJI	CCNNGG	2 cut(s)	274, 484
BseBI	CCWGG	2 cut(s)	468, 486
BseDI	CCNNGG	2 cut(s)	274, 484
BseGI	GGATG	2 cut(s)	121, 493
BseMII	CTCAG	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	385
BshFI	GGCC	1 cut(s)	492
BslFI	GGGAC	2 cut(s)	176, 241
BsmAI	GTCTC	3 cut(s)	8, 88, 404
BsmFI	GGGAC	2 cut(s)	176, 241
BsmI	GAATGC	1 cut(s)	13
BsnI	GGCC	1 cut(s)	492
Bso31I	GGTCTC	1 cut(s)	88
Bsp1407I	TGTACA	1 cut(s)	192
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	1 cut(s)	492
BspCNI	CTCAG	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	88
BsrGI	TGTACA	1 cut(s)	192
BssECI	CCNNGG	2 cut(s)	274, 484
BssNI	GRCGYC	1 cut(s)	32
BssT1I	CCWWGG	1 cut(s)	274
Bst2UI	CCWGG	2 cut(s)	468, 486
BstACI	GRCGYC	1 cut(s)	32
BstAUI	TGTACA	1 cut(s)	192
BstDEI	CTNAG	1 cut(s)	153
BstF5I	GGATG	2 cut(s)	121, 493
BstMAI	GTCTC	3 cut(s)	8, 88, 404
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstNI	CCWGG	2 cut(s)	468, 486
BstSCI	CCNGG	2 cut(s)	466, 484
BstV1I	GCAGC	1 cut(s)	385
BsuRI	GGCC	1 cut(s)	492
BtsCI	GGATG	2 cut(s)	121, 493
CaiI	CAGNNNCTG	1 cut(s)	17
Cfr13I	GGNCC	2 cut(s)	163, 242
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	2 cut(s)	37, 193
CviAII	CATG	3 cut(s)	215, 233, 260
CviJI	RGCY	3 cut(s)	43, 341, 492
CviKI_1	RGCY	3 cut(s)	43, 341, 492
CviQI	GTAC	2 cut(s)	37, 193
DdeI	CTNAG	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	274
Eco31I	GGTCTC	1 cut(s)	88
Eco32I	GATATC	1 cut(s)	130
Eco47I	GGWCC	2 cut(s)	163, 242
Eco57I	CTGAAG	1 cut(s)	39
EcoO109I	RGGNCCY	1 cut(s)	242
EcoRI	GAATTC	1 cut(s)	142
EcoRII	CCWGG	2 cut(s)	466, 484
EcoRV	GATATC	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	274
ErhI	CCWWGG	1 cut(s)	274
FaeI	CATG	3 cut(s)	218, 236, 263
FaqI	GGGAC	2 cut(s)	176, 241
FatI	CATG	3 cut(s)	214, 232, 259
Fnu4HI	GCNGC	1 cut(s)	399
FokI	GGATG	2 cut(s)	108, 480
Fsp4HI	GCNGC	1 cut(s)	399
FspBI	CTAG	1 cut(s)	338
GluI	GCNGC	1 cut(s)	399
HaeIII	GGCC	1 cut(s)	492
HgaI	GACGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	3 cut(s)	218, 236, 263
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	2 cut(s)	114, 254
Hpy188I	TCNGA	5 cut(s)	154, 177, 282, 349, 418
Hpy188III	TCNNGA	2 cut(s)	125, 497
Hpy99I	CGWCG	2 cut(s)	34, 101
HpyCH4V	TGCA	2 cut(s)	11, 439
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpyF3I	CTNAG	1 cut(s)	153
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	3 cut(s)	218, 236, 263
LmnI	GCTCC	1 cut(s)	346
LpnPI	CCDG	7 cut(s)	48, 65, 138, 196, 453, 471, 480
Lsp1109I	GCAGC	1 cut(s)	385
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	338
MaeIII	GTNAC	1 cut(s)	446
MboII	GAAGA	1 cut(s)	362
MluCI	AATT	3 cut(s)	142, 426, 461
MlyI	GAGTC	1 cut(s)	263
MnlI	CCTC	4 cut(s)	233, 278, 388, 482
MseI	TTAA	1 cut(s)	314
MspR9I	CCNGG	2 cut(s)	468, 486
Mva1269I	GAATGC	1 cut(s)	13
MvaI	CCWGG	2 cut(s)	468, 486
MwoI	GCNNNNNNNGC	1 cut(s)	40
NlaIII	CATG	3 cut(s)	218, 236, 263
NlaIV	GGNNCC	1 cut(s)	164
NmuCI	GTSAC	1 cut(s)	446
PctI	GAATGC	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	114
PfoI	TCCNGGA	1 cut(s)	466
PkrI	GCNGC	1 cut(s)	400
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
PpuMI	RGGWCCY	1 cut(s)	242
Psp5II	RGGWCCY	1 cut(s)	242
Psp6I	CCWGG	2 cut(s)	466, 484
PspGI	CCWGG	2 cut(s)	466, 484
PspN4I	GGNNCC	1 cut(s)	164
PspPI	GGNCC	2 cut(s)	163, 242
PspPPI	RGGWCCY	1 cut(s)	242
PstNI	CAGNNNCTG	1 cut(s)	17
RsaI	GTAC	2 cut(s)	38, 194
RsaNI	GTAC	2 cut(s)	37, 193
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	1 cut(s)	399
Sau96I	GGNCC	2 cut(s)	163, 242
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	2 cut(s)	468, 486
SetI	ASST	6 cut(s)	45, 84, 247, 276, 343, 380
SfaNI	GCATC	1 cut(s)	346
SinI	GGWCC	2 cut(s)	163, 242
SmlI	CTYRAG	1 cut(s)	379
SmoI	CTYRAG	1 cut(s)	379
Sse9I	AATT	3 cut(s)	142, 426, 461
SsiI	CCGC	1 cut(s)	23
SspMI	CTAG	1 cut(s)	338
StyD4I	CCNGG	2 cut(s)	466, 484
StyI	CCWWGG	1 cut(s)	274
TaqI	TCGA	1 cut(s)	96
TaqII	GACCGA	1 cut(s)	126
TasI	AATT	3 cut(s)	142, 426, 461
TatI	WGTACW	1 cut(s)	192
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	1 cut(s)	398
Tsp45I	GTSAC	1 cut(s)	446
TspGWI	ACGGA	2 cut(s)	213, 375
VpaK11BI	GGWCC	2 cut(s)	163, 242
XapI	RAATTY	3 cut(s)	142, 426, 461
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.