Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005802

Physical Location & Seq

Genomic Coordinates Reverse (-)

30021760 .. 30026305

Gene Structure 4546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g34680.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGAGTTGAATGCAGAGACTGGAACGGAAACGACGCCGTACAGGCTTCTGCTCTCATGCCCTTCTGGTCTCTCACCATCACAGGTTTCTGTGGTTTTTGATGAACTATATGACCGAATCCCCCATCCGGATATCAACTTGGAGAATTCTATTTCTGAGATATGGGACCAGAGGGTTCAGAGGAATCCGTCATTGTACAATGGGACGAAGTTCCGGCATGGACATCATACATGGCATGATGGAGGACCTAACCAAGAGTCTCATGTTTGCCTCCACCTTGGTCTGACAGATTATAGGACTTTTGTGGGAACAAACTTAAATCCTTTATGGGAAAAGTTCCTAGCGCCATCAGAAGATGATGCTATACAATGTCAGCACACCTCAAATCCATTGGGTAATGGTGCTATTGTGGAGACATCTGACAAGAAAATACTTGTGTTGCAAAGAAGTCACAATGTTGGGGAATTTCCTGGACACTTTGTTTTCCCAGGAGGCCATCCAGAGCCCCAAGAAGTTGGAATAGTATCCCATCATCACAAGGACTTGATGGACTCCGAACTTCTGAACAAGAAGGTTTCTCAGGAGATGTTCGACAGCATTGTTCGTGAAGTAGTTGAAGAAATTGGAGTACCTTCAGATTCCCTTTACGAGCAAATATTTATTGGTATATCCCGCAGGGTGTTGAATGTGAGACCAGCTGCATTTTTCTTCATGAAATGCAGTCTCAGCTCTAAGGAGATTCAGCAAATGTATTCTACTGCACAAGACAGTTTTGAGTCAACTCAGCTTTACACAGTTTCAATGATTGAGTTGGAAAACATGGCATCCAAAATGCCTGGTTGCCATGAAGGTGGATTTGCTTTATATAAGATAATGGTAGAAGCTGGAAGAAAGTCTCATGCAAGAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0052751 GO:0060359 GO:0070887 GO:0071242 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

304

Amino Acids

34.14

Weight (kDa)

5.54

Isoelectric Point (pI)

45.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46200 AT3G46200 AT3G46200 AT3G46200 AT3G46200 AT3G46200
fragaria_vesca	FvH4_3g34680 FvH4_3g34680 FvH4_3g34680 FvH4_3g34680
malus_domestica	MD03G1102800.v1.1 MD11G1116600.v1.1
prunus_persica	Prupe.6G086900_v2.0.a1 Prupe.6G086900_v2.0.a1 Prupe.6G086900_v2.0.a1
pyrus_communis	pycom11g09800
rosa_chinensis	RchiOBHm_Chr5g0062361
rosa_laevigata	RLG00000035553
rosa_multiflora	Rmu_sc0005798.1_g000001 Rmu_sc0018052.1_g000006 Rmu_sc0019705.1_g000003
rosa_roxburghii	Rroxscaffold_1G00018320
rosa_rugosa	Rorug05G0349000
rosa_samantha	Rh5AG408900 Rh5BG422900 Rh5CG446900 Rh5DG437700
rosa_wichuraiana	Rw5G038530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	127
AciI	CCGC	1 cut(s)	673
AcsI	RAATTY	2 cut(s)	145, 464
AcuI	CTGAAG	1 cut(s)	618
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	3 cut(s)	41, 197, 630
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	4 cut(s)	10, 617, 685, 801
AjnI	CCWGG	3 cut(s)	469, 487, 835
AluBI	AGCT	4 cut(s)	698, 729, 787, 884
AluI	AGCT	4 cut(s)	698, 729, 787, 884
Alw26I	GTCTC	7 cut(s)	11, 74, 264, 407, 685, 728, 900
AlwNI	CAGNNNCTG	1 cut(s)	20
Aor13HI	TCCGGA	1 cut(s)	127
AoxI	GGCC	1 cut(s)	493
ApeKI	GCWGC	1 cut(s)	698
ApoI	RAATTY	2 cut(s)	145, 464
AspLEI	GCGC	1 cut(s)	346
AspS9I	GGNCC	2 cut(s)	166, 245
AsuHPI	GGTGA	1 cut(s)	66
AvaII	GGWCC	2 cut(s)	166, 245
BanII	GRGCYC	1 cut(s)	507
BbvI	GCAGC	1 cut(s)	685
BccI	CCATC	7 cut(s)	85, 132, 233, 355, 504, 537, 541
BceAI	ACGGC	1 cut(s)	22
BciT130I	CCWGG	3 cut(s)	471, 489, 837
BciVI	GTATCC	1 cut(s)	535
BcoDI	GTCTC	7 cut(s)	11, 74, 264, 407, 685, 728, 900
BfaI	CTAG	1 cut(s)	341
BfoI	RGCGCY	1 cut(s)	347
BfuI	GTATCC	1 cut(s)	535
BglI	GCCNNNNNGGC	1 cut(s)	43
BisI	GCNGC	1 cut(s)	699
BlsI	GCNGC	1 cut(s)	700
Bme1390I	CCNGG	3 cut(s)	471, 489, 837
Bme18I	GGWCC	2 cut(s)	166, 245
BmgT120I	GGNCC	2 cut(s)	166, 245
BmiI	GGNNCC	1 cut(s)	167
BmrFI	CCNGG	3 cut(s)	471, 489, 837
BmsI	GCATC	2 cut(s)	349, 833
BsaHI	GRCGYC	1 cut(s)	35
BsaI	GGTCTC	2 cut(s)	74, 685
BsaJI	CCNNGG	2 cut(s)	277, 487
BsaWI	WCCGGW	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	25
BseAI	TCCGGA	1 cut(s)	127
BseBI	CCWGG	3 cut(s)	471, 489, 837
BseDI	CCNNGG	2 cut(s)	277, 487
BseGI	GGATG	3 cut(s)	124, 496, 824
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	4 cut(s)	147, 593, 739, 797
BseNI	ACTGG	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	685
BsgI	GTGCAG	1 cut(s)	744
BshFI	GGCC	1 cut(s)	495
BsiSI	CCGG	2 cut(s)	128, 214
BslFI	GGGAC	2 cut(s)	179, 217
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	7 cut(s)	11, 74, 264, 407, 685, 728, 900
BsmFI	GGGAC	2 cut(s)	179, 217
BsmI	GAATGC	1 cut(s)	16
BsnI	GGCC	1 cut(s)	495
Bso31I	GGTCTC	2 cut(s)	74, 685
Bsp1286I	GDGCHC	1 cut(s)	507
Bsp13I	TCCGGA	1 cut(s)	127
Bsp1407I	TGTACA	1 cut(s)	195
BspACI	CCGC	1 cut(s)	673
BspANI	GGCC	1 cut(s)	495
BspCNI	CTCAG	4 cut(s)	148, 592, 738, 796
BspEI	TCCGGA	1 cut(s)	127
BspHI	TCATGA	1 cut(s)	711
BspLI	GGNNCC	1 cut(s)	167
BspTNI	GGTCTC	2 cut(s)	74, 685
BsrGI	TGTACA	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	25
BssECI	CCNNGG	2 cut(s)	277, 487
BssNI	GRCGYC	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	277
Bst2UI	CCWGG	3 cut(s)	471, 489, 837
Bst4CI	ACNGT	2 cut(s)	770, 796
BstACI	GRCGYC	1 cut(s)	35
BstAUI	TGTACA	1 cut(s)	195
BstDEI	CTNAG	5 cut(s)	156, 579, 725, 732, 783
BstF5I	GGATG	3 cut(s)	124, 496, 824
BstH2I	RGCGCY	1 cut(s)	347
BstHHI	GCGC	1 cut(s)	346
BstMAI	GTCTC	7 cut(s)	11, 74, 264, 407, 685, 728, 900
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 726
BstNI	CCWGG	3 cut(s)	471, 489, 837
BstSCI	CCNGG	3 cut(s)	469, 487, 835
BstV1I	GCAGC	1 cut(s)	685
BstXI	CCANNNNNNTGG	2 cut(s)	515, 851
BsuI	GTATCC	1 cut(s)	535
BsuRI	GGCC	1 cut(s)	495
BtsCI	GGATG	3 cut(s)	124, 496, 824
CaiI	CAGNNNCTG	1 cut(s)	20
CciI	TCATGA	1 cut(s)	711
CfoI	GCGC	1 cut(s)	346
Cfr13I	GGNCC	2 cut(s)	166, 245
CseI	GACGC	1 cut(s)	43
Csp6I	GTAC	3 cut(s)	40, 196, 629
CviAII	CATG	9 cut(s)	57, 218, 231, 236, 263, 712, 820, 845, 899
CviJI	RGCY	7 cut(s)	46, 495, 505, 698, 729, 787, 884
CviKI_1	RGCY	7 cut(s)	46, 495, 505, 698, 729, 787, 884
CviQI	GTAC	3 cut(s)	40, 196, 629
DdeI	CTNAG	5 cut(s)	156, 579, 725, 732, 783
Eco130I	CCWWGG	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	507
Eco31I	GGTCTC	2 cut(s)	74, 685
Eco32I	GATATC	1 cut(s)	133
Eco47I	GGWCC	2 cut(s)	166, 245
Eco57I	CTGAAG	1 cut(s)	618
EcoO109I	RGGNCCY	1 cut(s)	245
EcoRI	GAATTC	1 cut(s)	145
EcoRII	CCWGG	3 cut(s)	469, 487, 835
EcoRV	GATATC	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	507
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	9 cut(s)	60, 221, 234, 239, 266, 715, 823, 848, 902
FaqI	GGGAC	2 cut(s)	179, 217
FatI	CATG	9 cut(s)	56, 217, 230, 235, 262, 711, 819, 844, 898
FauI	CCCGC	1 cut(s)	680
Fnu4HI	GCNGC	1 cut(s)	699
FokI	GGATG	3 cut(s)	111, 483, 811
FriOI	GRGCYC	1 cut(s)	507
Fsp4HI	GCNGC	1 cut(s)	699
FspBI	CTAG	1 cut(s)	341
GlaI	GCGC	1 cut(s)	345
GluI	GCNGC	1 cut(s)	699
HaeII	RGCGCY	1 cut(s)	347
HaeIII	GGCC	1 cut(s)	495
HapII	CCGG	2 cut(s)	128, 214
HgaI	GACGC	1 cut(s)	43
HhaI	GCGC	1 cut(s)	346
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	9 cut(s)	60, 221, 234, 239, 266, 715, 823, 848, 902
Hin6I	GCGC	1 cut(s)	344
HinP1I	GCGC	1 cut(s)	344
HincII	GTYRAC	1 cut(s)	780
HindII	GTYRAC	1 cut(s)	780
HinfI	GANTC	7 cut(s)	117, 184, 257, 551, 638, 739, 776
HpaII	CCGG	2 cut(s)	128, 214
HphI	GGTGA	1 cut(s)	66
Hpy166II	GTNNAC	1 cut(s)	780
Hpy188I	TCNGA	8 cut(s)	157, 180, 285, 352, 421, 556, 564, 637
Hpy188III	TCNNGA	5 cut(s)	128, 500, 581, 605, 712
Hpy8I	GTNNAC	1 cut(s)	780
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	4 cut(s)	72, 565, 642, 842
HpyCH4III	ACNGT	2 cut(s)	770, 796
HpyCH4V	TGCA	6 cut(s)	14, 442, 701, 720, 761, 902
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 726
HpyF3I	CTNAG	5 cut(s)	156, 579, 725, 732, 783
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	9 cut(s)	60, 221, 234, 239, 266, 715, 823, 848, 902
HspAI	GCGC	1 cut(s)	344
Kpn2I	TCCGGA	1 cut(s)	127
Lsp1109I	GCAGC	1 cut(s)	685
LweI	GCATC	2 cut(s)	349, 833
MaeI	CTAG	1 cut(s)	341
MaeIII	GTNAC	1 cut(s)	449
MboII	GAAGA	4 cut(s)	365, 629, 700, 900
MhlI	GDGCHC	1 cut(s)	507
MluCI	AATT	3 cut(s)	145, 464, 621
MlyI	GAGTC	3 cut(s)	266, 545, 785
MmeI	TCCRAC	2 cut(s)	496, 792
MnlI	CCTC	6 cut(s)	165, 174, 236, 281, 391, 485
MroI	TCCGGA	1 cut(s)	127
MseI	TTAA	1 cut(s)	317
MslI	CAYNNNNRTG	1 cut(s)	849
MspA1I	CMGCKG	1 cut(s)	698
MspI	CCGG	2 cut(s)	128, 214
MspR9I	CCNGG	3 cut(s)	471, 489, 837
Mva1269I	GAATGC	1 cut(s)	16
MvaI	CCWGG	3 cut(s)	471, 489, 837
MwoI	GCNNNNNNNGC	2 cut(s)	43, 726
NlaIII	CATG	9 cut(s)	60, 221, 234, 239, 266, 715, 823, 848, 902
NlaIV	GGNNCC	1 cut(s)	167
NmuCI	GTSAC	1 cut(s)	449
PagI	TCATGA	1 cut(s)	711
PctI	GAATGC	1 cut(s)	16
PfeI	GAWTC	4 cut(s)	117, 184, 638, 739
PfoI	TCCNGGA	1 cut(s)	469
PkrI	GCNGC	1 cut(s)	700
PleI	GAGTC	3 cut(s)	265, 545, 784
PpsI	GAGTC	3 cut(s)	265, 545, 784
PpuMI	RGGWCCY	1 cut(s)	245
Psp5II	RGGWCCY	1 cut(s)	245
Psp6I	CCWGG	3 cut(s)	469, 487, 835
PspGI	CCWGG	3 cut(s)	469, 487, 835
PspN4I	GGNNCC	1 cut(s)	167
PspPI	GGNCC	2 cut(s)	166, 245
PspPPI	RGGWCCY	1 cut(s)	245
PstNI	CAGNNNCTG	1 cut(s)	20
PvuII	CAGCTG	1 cut(s)	698
RsaI	GTAC	3 cut(s)	41, 197, 630
RsaNI	GTAC	3 cut(s)	40, 196, 629
RseI	CAYNNNNRTG	1 cut(s)	849
SaqAI	TTAA	1 cut(s)	317
SatI	GCNGC	1 cut(s)	699
Sau96I	GGNCC	2 cut(s)	166, 245
SchI	GAGTC	3 cut(s)	266, 545, 785
ScrFI	CCNGG	3 cut(s)	471, 489, 837
SduI	GDGCHC	1 cut(s)	507
SfaNI	GCATC	2 cut(s)	349, 833
SinI	GGWCC	2 cut(s)	166, 245
SmiMI	CAYNNNNRTG	1 cut(s)	849
Sse9I	AATT	3 cut(s)	145, 464, 621
SsiI	CCGC	1 cut(s)	673
SspI	AATATT	1 cut(s)	657
SspMI	CTAG	1 cut(s)	341
StyD4I	CCNGG	3 cut(s)	469, 487, 835
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	2 cut(s)	770, 796
TaqI	TCGA	1 cut(s)	591
TaqII	GACCGA	1 cut(s)	129
TasI	AATT	3 cut(s)	145, 464, 621
TatI	WGTACW	1 cut(s)	195
TfiI	GAWTC	4 cut(s)	117, 184, 638, 739
Tru1I	TTAA	1 cut(s)	317
Tru9I	TTAA	1 cut(s)	317
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	1 cut(s)	698
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	4 cut(s)	117, 700, 728, 861
TspGWI	ACGGA	2 cut(s)	41, 177
VpaK11BI	GGWCC	2 cut(s)	166, 245
XapI	RAATTY	2 cut(s)	145, 464
XspI	CTAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.