Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005802

Physical Location & Seq

Genomic Coordinates Reverse (-)

68298060 .. 68301288

Gene Structure 3229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035553

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGAGAATGCAGAGACTGAAACGGAAACGACGCCGTACAAGCTTCTGCTCTCTTGCCCATCTGGTCTTACGCCATCACAGGTCTCTGTGGTTTTTGACGAACTATATGACCGAATCCCCCATCCAGATATCAACTTGGAGAATTCTATTTCTGAGATATGGGACCAAAGGGTTCAGAAAAATCCATCATTGTACAACGGAACAAAGTTCAGGTATGGACATCATATATGGCATGATGGAGGACCTAACCAAGAGTCTCATGTATGCCTCCACCTTGGTCTGACAGATTATAGGACTTTTGTGGGAACAAACCTAAATCCTTTATGGGAAATGTTCCTAGCTCCATCAGAAGATGATGCCATACGATGTCAGCACACCTCAAGTCCGTTGGGTAATGCTGCTATTGTGGAGACATCTGACAAGAAAATTCTTGTGTTGCAAAGAAGTCACAATGTTGGGGAATTTCCTGGACACTTTGTTTTCCCAGGAGGCCATCCAGAGCCCCAAGAAGTCGGTATAGTATCTCATCATCACAAAGACTTAACAGACTCCAAACTTCTCAACAAGAAGGTTTCTCAGGAGATGTTCGACAGCATTGTTCGTGAGGTGGTTGAAGAAATTGGAGTACCTTCAGATTCCCTTTATGAGCAGGTTTTCATAGGTATATCCCGCAGGAAGTTAAATGTGAGACCAGCTGCATTTTTCTTCATGAAATGCAGTCTCAGCTCAAAGGAAATTCAGCAAATGTATTCTACTGCACAAGACAGCTTTGAGTCAACTCAGCTTTATACAGTTTCAATGATTGAGTTGGAGAAAATGGCATCTAAAATGCCAGGTTGCCATGAAGGCGGATTTGCTCTATATAAGTCGATTGTAGAAGCCGGAAGAATGTCTGATGCAAGAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0052751 GO:0060359 GO:0070887 GO:0071242 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

303

Amino Acids

34.02

Weight (kDa)

5.5

Isoelectric Point (pI)

51.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46200 AT3G46200 AT3G46200 AT3G46200 AT3G46200 AT3G46200
fragaria_vesca	FvH4_3g34680 FvH4_3g34680 FvH4_3g34680 FvH4_3g34680
malus_domestica	MD03G1102800.v1.1 MD11G1116600.v1.1
prunus_persica	Prupe.6G086900_v2.0.a1 Prupe.6G086900_v2.0.a1 Prupe.6G086900_v2.0.a1
pyrus_communis	pycom11g09800
rosa_chinensis	RchiOBHm_Chr5g0062361
rosa_laevigata	RLG00000035553
rosa_multiflora	Rmu_sc0005798.1_g000001 Rmu_sc0018052.1_g000006 Rmu_sc0019705.1_g000003
rosa_roxburghii	Rroxscaffold_1G00018320
rosa_rugosa	Rorug05G0349000
rosa_samantha	Rh5AG408900 Rh5BG422900 Rh5CG446900 Rh5DG437700
rosa_wichuraiana	Rw5G038530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	640
AciI	CCGC	2 cut(s)	670, 849
AcsI	RAATTY	4 cut(s)	142, 426, 461, 735
AcuI	CTGAAG	1 cut(s)	615
AcyI	GRCGYC	1 cut(s)	32
AfaI	GTAC	3 cut(s)	38, 194, 627
AgsI	TTSAA	2 cut(s)	614, 798
AjnI	CCWGG	3 cut(s)	466, 484, 832
AluBI	AGCT	6 cut(s)	43, 341, 695, 726, 768, 784
AluI	AGCT	6 cut(s)	43, 341, 695, 726, 768, 784
Alw26I	GTCTC	6 cut(s)	8, 88, 261, 404, 682, 725
AlwNI	CAGNNNCTG	1 cut(s)	17
AoxI	GGCC	1 cut(s)	490
ApeKI	GCWGC	2 cut(s)	398, 695
ApoI	RAATTY	4 cut(s)	142, 426, 461, 735
AspS9I	GGNCC	2 cut(s)	163, 242
AvaII	GGWCC	2 cut(s)	163, 242
BanII	GRGCYC	1 cut(s)	504
BbvI	GCAGC	2 cut(s)	385, 682
BccI	CCATC	7 cut(s)	67, 82, 129, 193, 230, 352, 501
BceAI	ACGGC	1 cut(s)	19
BciT130I	CCWGG	3 cut(s)	468, 486, 834
BcoDI	GTCTC	6 cut(s)	8, 88, 261, 404, 682, 725
BfaI	CTAG	1 cut(s)	338
BfuAI	ACCTGC	1 cut(s)	640
BglI	GCCNNNNNGGC	1 cut(s)	846
BisI	GCNGC	2 cut(s)	399, 696
BlsI	GCNGC	2 cut(s)	400, 697
Bme1390I	CCNGG	3 cut(s)	468, 486, 834
Bme18I	GGWCC	2 cut(s)	163, 242
BmgT120I	GGNCC	2 cut(s)	163, 242
BmiI	GGNNCC	1 cut(s)	164
BmrFI	CCNGG	3 cut(s)	468, 486, 834
BmsI	GCATC	3 cut(s)	346, 830, 886
BpuEI	CTTGAG	1 cut(s)	364
BsaHI	GRCGYC	1 cut(s)	32
BsaI	GGTCTC	2 cut(s)	88, 682
BsaJI	CCNNGG	2 cut(s)	274, 484
BseBI	CCWGG	3 cut(s)	468, 486, 834
BseDI	CCNNGG	2 cut(s)	274, 484
BseGI	GGATG	2 cut(s)	121, 493
BseMII	CTCAG	4 cut(s)	144, 590, 736, 794
BseXI	GCAGC	2 cut(s)	385, 682
BsgI	GTGCAG	1 cut(s)	741
BshFI	GGCC	1 cut(s)	492
BsiSI	CCGG	1 cut(s)	882
BslFI	GGGAC	1 cut(s)	176
BsmAI	GTCTC	6 cut(s)	8, 88, 261, 404, 682, 725
BsmFI	GGGAC	1 cut(s)	176
BsmI	GAATGC	1 cut(s)	13
BsnI	GGCC	1 cut(s)	492
Bso31I	GGTCTC	2 cut(s)	88, 682
Bsp1286I	GDGCHC	1 cut(s)	504
Bsp1407I	TGTACA	1 cut(s)	192
BspACI	CCGC	2 cut(s)	670, 849
BspANI	GGCC	1 cut(s)	492
BspCNI	CTCAG	4 cut(s)	145, 589, 735, 793
BspHI	TCATGA	1 cut(s)	708
BspLI	GGNNCC	1 cut(s)	164
BspMI	ACCTGC	1 cut(s)	640
BspTNI	GGTCTC	2 cut(s)	88, 682
BsrGI	TGTACA	1 cut(s)	192
BssECI	CCNNGG	2 cut(s)	274, 484
BssNI	GRCGYC	1 cut(s)	32
BssT1I	CCWWGG	1 cut(s)	274
Bst2UI	CCWGG	3 cut(s)	468, 486, 834
Bst4CI	ACNGT	1 cut(s)	793
BstACI	GRCGYC	1 cut(s)	32
BstAUI	TGTACA	1 cut(s)	192
BstDEI	CTNAG	4 cut(s)	153, 576, 722, 780
BstF5I	GGATG	2 cut(s)	121, 493
BstMAI	GTCTC	6 cut(s)	8, 88, 261, 404, 682, 725
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 723, 846
BstNI	CCWGG	3 cut(s)	468, 486, 834
BstSCI	CCNGG	3 cut(s)	466, 484, 832
BstV1I	GCAGC	2 cut(s)	385, 682
BsuRI	GGCC	1 cut(s)	492
BtsCI	GGATG	2 cut(s)	121, 493
BveI	ACCTGC	1 cut(s)	640
CaiI	CAGNNNCTG	1 cut(s)	17
CciI	TCATGA	1 cut(s)	708
Cfr13I	GGNCC	2 cut(s)	163, 242
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	3 cut(s)	37, 193, 626
CviAII	CATG	4 cut(s)	233, 260, 709, 842
CviJI	RGCY	9 cut(s)	43, 341, 492, 502, 695, 726, 768, 784, 881
CviKI_1	RGCY	9 cut(s)	43, 341, 492, 502, 695, 726, 768, 784, 881
CviQI	GTAC	3 cut(s)	37, 193, 626
DdeI	CTNAG	4 cut(s)	153, 576, 722, 780
EciI	GGCGGA	1 cut(s)	864
Eco130I	CCWWGG	1 cut(s)	274
Eco24I	GRGCYC	1 cut(s)	504
Eco31I	GGTCTC	2 cut(s)	88, 682
Eco32I	GATATC	1 cut(s)	130
Eco47I	GGWCC	2 cut(s)	163, 242
Eco57I	CTGAAG	1 cut(s)	615
EcoO109I	RGGNCCY	1 cut(s)	242
EcoRI	GAATTC	1 cut(s)	142
EcoRII	CCWGG	3 cut(s)	466, 484, 832
EcoRV	GATATC	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	274
FaeI	CATG	4 cut(s)	236, 263, 712, 845
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	4 cut(s)	232, 259, 708, 841
FauI	CCCGC	1 cut(s)	677
Fnu4HI	GCNGC	2 cut(s)	399, 696
FokI	GGATG	2 cut(s)	108, 480
FriOI	GRGCYC	1 cut(s)	504
Fsp4HI	GCNGC	2 cut(s)	399, 696
FspBI	CTAG	1 cut(s)	338
GluI	GCNGC	2 cut(s)	399, 696
HaeIII	GGCC	1 cut(s)	492
HapII	CCGG	1 cut(s)	882
HgaI	GACGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	4 cut(s)	236, 263, 712, 845
HincII	GTYRAC	1 cut(s)	777
HindII	GTYRAC	1 cut(s)	777
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	5 cut(s)	114, 254, 548, 635, 773
HpaII	CCGG	1 cut(s)	882
Hpy166II	GTNNAC	1 cut(s)	777
Hpy188I	TCNGA	7 cut(s)	154, 177, 282, 349, 418, 634, 895
Hpy188III	TCNNGA	5 cut(s)	125, 497, 578, 602, 709
Hpy8I	GTNNAC	1 cut(s)	777
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	3 cut(s)	562, 639, 839
HpyCH4III	ACNGT	1 cut(s)	793
HpyCH4V	TGCA	6 cut(s)	11, 439, 698, 717, 758, 899
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 723, 846
HpyF3I	CTNAG	4 cut(s)	153, 576, 722, 780
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	4 cut(s)	236, 263, 712, 845
LmnI	GCTCC	1 cut(s)	346
Lsp1109I	GCAGC	2 cut(s)	385, 682
LweI	GCATC	3 cut(s)	346, 830, 886
MaeI	CTAG	1 cut(s)	338
MaeIII	GTNAC	1 cut(s)	446
MboII	GAAGA	4 cut(s)	362, 626, 697, 897
MhlI	GDGCHC	1 cut(s)	504
MluCI	AATT	5 cut(s)	142, 426, 461, 618, 735
MlyI	GAGTC	3 cut(s)	263, 542, 782
MmeI	TCCRAC	1 cut(s)	789
MnlI	CCTC	5 cut(s)	233, 278, 388, 482, 598
MseI	TTAA	2 cut(s)	542, 680
MspA1I	CMGCKG	1 cut(s)	695
MspI	CCGG	1 cut(s)	882
MspR9I	CCNGG	3 cut(s)	468, 486, 834
Mva1269I	GAATGC	1 cut(s)	13
MvaI	CCWGG	3 cut(s)	468, 486, 834
MwoI	GCNNNNNNNGC	3 cut(s)	40, 723, 846
NlaIII	CATG	4 cut(s)	236, 263, 712, 845
NlaIV	GGNNCC	1 cut(s)	164
NmuCI	GTSAC	1 cut(s)	446
PagI	TCATGA	1 cut(s)	708
PctI	GAATGC	1 cut(s)	13
PfeI	GAWTC	2 cut(s)	114, 635
PfoI	TCCNGGA	1 cut(s)	466
PkrI	GCNGC	2 cut(s)	400, 697
PleI	GAGTC	3 cut(s)	262, 542, 781
PpsI	GAGTC	3 cut(s)	262, 542, 781
PpuMI	RGGWCCY	1 cut(s)	242
Psp5II	RGGWCCY	1 cut(s)	242
Psp6I	CCWGG	3 cut(s)	466, 484, 832
PspGI	CCWGG	3 cut(s)	466, 484, 832
PspN4I	GGNNCC	1 cut(s)	164
PspPI	GGNCC	2 cut(s)	163, 242
PspPPI	RGGWCCY	1 cut(s)	242
PstNI	CAGNNNCTG	1 cut(s)	17
PvuII	CAGCTG	1 cut(s)	695
RsaI	GTAC	3 cut(s)	38, 194, 627
RsaNI	GTAC	3 cut(s)	37, 193, 626
SaqAI	TTAA	2 cut(s)	542, 680
SatI	GCNGC	2 cut(s)	399, 696
Sau96I	GGNCC	2 cut(s)	163, 242
SchI	GAGTC	3 cut(s)	263, 542, 782
ScrFI	CCNGG	3 cut(s)	468, 486, 834
SduI	GDGCHC	1 cut(s)	504
SfaNI	GCATC	3 cut(s)	346, 830, 886
SinI	GGWCC	2 cut(s)	163, 242
SmlI	CTYRAG	1 cut(s)	379
SmoI	CTYRAG	1 cut(s)	379
Sse9I	AATT	5 cut(s)	142, 426, 461, 618, 735
SsiI	CCGC	2 cut(s)	670, 849
SspMI	CTAG	1 cut(s)	338
StyD4I	CCNGG	3 cut(s)	466, 484, 832
StyI	CCWWGG	1 cut(s)	274
TaaI	ACNGT	1 cut(s)	793
TaqI	TCGA	2 cut(s)	588, 869
TaqII	GACCGA	1 cut(s)	126
TasI	AATT	5 cut(s)	142, 426, 461, 618, 735
TatI	WGTACW	1 cut(s)	192
TfiI	GAWTC	2 cut(s)	114, 635
Tru1I	TTAA	2 cut(s)	542, 680
Tru9I	TTAA	2 cut(s)	542, 680
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	2 cut(s)	398, 695
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	4 cut(s)	646, 697, 725, 858
TspGWI	ACGGA	3 cut(s)	38, 213, 375
VpaK11BI	GGWCC	2 cut(s)	163, 242
XapI	RAATTY	4 cut(s)	142, 426, 461, 735
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.