Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005802

Physical Location & Seq

Genomic Coordinates Forward (+)

8147152 .. 8150465

Gene Structure 3314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g09800.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGAGAAGGCAGAGATTGAAACGATCACTAAGCCTTACAGGCTTCTGCTCTCTTGCCCCTCTGGTCTTTCACCCTCGCAGATTTCTGTGGTTTTTGATGGAGTCTATGATCGAATTCCCCATCCAGACATCAACTTGGAGAATTCTATTTCTGAGATATGGGATCAAAGGGTCCAGAAAAATCCATCACTGTACAATGGGACAAAGTTCAGGTATGGACAACATGTATGGAATGGTGGAGGTGGATCTAACCAAGAGCCTCATGTGTGCCTCCACCTTGGTCTGACAGATTATAGGACTTTTGTGGGCACAAACTTAAAGCCTTTGTGGGAAAGATTCCTGGTTCGATCAGAAGATGATGCCATACGTTGTCAACACACCTCAAGTTCATTGGGTAATGGTGCTATTGTGGAGACATCTGACAAGAAAGTACTAGTGTTGCAAAGAAGTAACAATGTCGGGGAGTTTCCCGGACACTTTATATTCCCAGGAGGCCATCCAGAGCCCCACGAAGTTGGAATAATATCCCATCACCATAAGGACGTGACAGACTCCAAAGCTATTAACAACAAAGTTTCTCAGGAGATGTTTGAGAGCATTGTTCGTGAGGTAGTTGAAGAAATCGGGGTACCTTCAGCTTCCCTTCATGAGCAAGTTTTTATCGGTATATCCCGCAGGGAGCTTAATGTGAGGCCAACTGCATTTTTCTTCATGAAATGCAGTCTCAGCTCAAGGGAGATTCAAAAACTGTATCCTAGTGCCCAAGACAGCTTTGAATCAACTCAGCTCTTTACAGTTCCAATGATTGAATTAGAGAACATGGTGTCGAAAATGCCAGGCTGTCATGTAGGTGGATTCGCGTTGTATAAGATGATGGTTGAAGCCGTGAAGAATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0052751 GO:0060359 GO:0070887 GO:0071242 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

300

Amino Acids

33.6

Weight (kDa)

6.11

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46200 AT3G46200 AT3G46200 AT3G46200 AT3G46200 AT3G46200
fragaria_vesca	FvH4_3g34680 FvH4_3g34680 FvH4_3g34680 FvH4_3g34680
malus_domestica	MD03G1102800.v1.1 MD11G1116600.v1.1
prunus_persica	Prupe.6G086900_v2.0.a1 Prupe.6G086900_v2.0.a1 Prupe.6G086900_v2.0.a1
pyrus_communis	pycom11g09800
rosa_chinensis	RchiOBHm_Chr5g0062361
rosa_laevigata	RLG00000035553
rosa_multiflora	Rmu_sc0005798.1_g000001 Rmu_sc0018052.1_g000006 Rmu_sc0019705.1_g000003
rosa_roxburghii	Rroxscaffold_1G00018320
rosa_rugosa	Rorug05G0349000
rosa_samantha	Rh5AG408900 Rh5BG422900 Rh5CG446900 Rh5DG437700
rosa_wichuraiana	Rw5G038530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	628
AccB1I	GGYRCC	1 cut(s)	628
AccII	CGCG	1 cut(s)	860
AciI	CCGC	1 cut(s)	673
AclWI	GGATC	2 cut(s)	171, 253
AcsI	RAATTY	2 cut(s)	114, 142
AcuI	CTGAAG	1 cut(s)	618
AfaI	GTAC	3 cut(s)	194, 432, 630
AflIII	ACRYGT	1 cut(s)	223
AgsI	TTSAA	6 cut(s)	20, 617, 743, 776, 809, 881
AhlI	ACTAGT	1 cut(s)	433
AjiI	CACGTC	1 cut(s)	544
AjnI	CCWGG	3 cut(s)	339, 487, 835
AluBI	AGCT	6 cut(s)	560, 638, 682, 729, 771, 787
AluI	AGCT	6 cut(s)	560, 638, 682, 729, 771, 787
Alw26I	GTCTC	2 cut(s)	407, 728
AlwI	GGATC	2 cut(s)	171, 253
AoxI	GGCC	2 cut(s)	493, 692
ApoI	RAATTY	2 cut(s)	114, 142
Asp718I	GGTACC	1 cut(s)	628
AspS9I	GGNCC	1 cut(s)	172
AsuC2I	CCSGG	1 cut(s)	471
AsuHPI	GGTGA	2 cut(s)	63, 524
AvaII	GGWCC	1 cut(s)	172
BaeGI	GKGCMC	2 cut(s)	311, 763
BanI	GGYRCC	1 cut(s)	628
BanII	GRGCYC	1 cut(s)	507
BccI	CCATC	6 cut(s)	92, 129, 193, 504, 537, 868
BceAI	ACGGC	1 cut(s)	869
BciT130I	CCWGG	3 cut(s)	341, 489, 837
BciVI	GTATCC	1 cut(s)	762
BcnI	CCSGG	1 cut(s)	471
BcoDI	GTCTC	2 cut(s)	407, 728
BcuI	ACTAGT	1 cut(s)	433
BfaI	CTAG	2 cut(s)	434, 756
BfuI	GTATCC	1 cut(s)	762
BglI	GCCNNNNNGGC	1 cut(s)	40
BmcAI	AGTACT	1 cut(s)	432
Bme1390I	CCNGG	4 cut(s)	341, 471, 489, 837
Bme18I	GGWCC	1 cut(s)	172
BmgBI	CACGTC	1 cut(s)	544
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	2 cut(s)	173, 630
BmrFI	CCNGG	4 cut(s)	341, 471, 489, 837
BmsI	GCATC	1 cut(s)	349
BpuEI	CTTGAG	2 cut(s)	367, 715
BpuMI	CCSGG	1 cut(s)	471
BsaJI	CCNNGG	2 cut(s)	277, 487
BseBI	CCWGG	3 cut(s)	341, 489, 837
BseDI	CCNNGG	2 cut(s)	277, 487
BseGI	GGATG	2 cut(s)	121, 496
BseMII	CTCAG	4 cut(s)	144, 593, 739, 797
BseSI	GKGCMC	2 cut(s)	311, 763
Bsh1236I	CGCG	1 cut(s)	860
BshFI	GGCC	2 cut(s)	495, 694
BshNI	GGYRCC	1 cut(s)	628
BsiSI	CCGG	1 cut(s)	471
BslFI	GGGAC	1 cut(s)	214
BsmAI	GTCTC	2 cut(s)	407, 728
BsmFI	GGGAC	1 cut(s)	214
BsnI	GGCC	2 cut(s)	495, 694
Bsp1286I	GDGCHC	3 cut(s)	311, 507, 763
Bsp1407I	TGTACA	1 cut(s)	192
Bsp143I	GATC	5 cut(s)	24, 109, 163, 245, 347
BspACI	CCGC	1 cut(s)	673
BspANI	GGCC	2 cut(s)	495, 694
BspCNI	CTCAG	4 cut(s)	145, 592, 738, 796
BspFNI	CGCG	1 cut(s)	860
BspHI	TCATGA	2 cut(s)	646, 711
BspLI	GGNNCC	2 cut(s)	173, 630
BspPI	GGATC	2 cut(s)	171, 253
BspT107I	GGYRCC	1 cut(s)	628
BsrGI	TGTACA	1 cut(s)	192
BssECI	CCNNGG	2 cut(s)	277, 487
BssMI	GATC	5 cut(s)	24, 109, 163, 245, 347
BssT1I	CCWWGG	1 cut(s)	277
Bst2UI	CCWGG	3 cut(s)	341, 489, 837
Bst4CI	ACNGT	3 cut(s)	192, 750, 796
BstAUI	TGTACA	1 cut(s)	192
BstDEI	CTNAG	5 cut(s)	30, 153, 579, 725, 783
BstF5I	GGATG	2 cut(s)	121, 496
BstFNI	CGCG	1 cut(s)	860
BstKTI	GATC	5 cut(s)	27, 112, 166, 248, 350
BstMAI	GTCTC	2 cut(s)	407, 728
BstMBI	GATC	5 cut(s)	24, 109, 163, 245, 347
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 726
BstNI	CCWGG	3 cut(s)	341, 489, 837
BstNSI	RCATGY	1 cut(s)	227
BstSCI	CCNGG	4 cut(s)	339, 469, 487, 835
BstSLI	GKGCMC	2 cut(s)	311, 763
BstUI	CGCG	1 cut(s)	860
BstX2I	RGATCY	1 cut(s)	245
BstXI	CCANNNNNNTGG	1 cut(s)	515
BstYI	RGATCY	1 cut(s)	245
BsuI	GTATCC	1 cut(s)	762
BsuRI	GGCC	2 cut(s)	495, 694
BtrI	CACGTC	1 cut(s)	544
BtsCI	GGATG	2 cut(s)	121, 496
BtsIMutI	CAGTG	1 cut(s)	188
CciI	TCATGA	2 cut(s)	646, 711
Cfr13I	GGNCC	1 cut(s)	172
Csp6I	GTAC	3 cut(s)	193, 431, 629
CviAII	CATG	6 cut(s)	224, 263, 647, 712, 820, 845
CviQI	GTAC	3 cut(s)	193, 431, 629
DdeI	CTNAG	5 cut(s)	30, 153, 579, 725, 783
DpnI	GATC	5 cut(s)	26, 111, 165, 247, 349
DpnII	GATC	5 cut(s)	24, 109, 163, 245, 347
Eco130I	CCWWGG	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	507
Eco47I	GGWCC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	618
EcoRI	GAATTC	2 cut(s)	114, 142
EcoRII	CCWGG	3 cut(s)	339, 487, 835
EcoT14I	CCWWGG	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	507
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	6 cut(s)	227, 266, 650, 715, 823, 848
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	6 cut(s)	223, 262, 646, 711, 819, 844
FauI	CCCGC	1 cut(s)	680
FokI	GGATG	2 cut(s)	108, 483
FriOI	GRGCYC	1 cut(s)	507
FspBI	CTAG	2 cut(s)	434, 756
HaeIII	GGCC	2 cut(s)	495, 694
HapII	CCGG	1 cut(s)	471
Hin1II	CATG	6 cut(s)	227, 266, 650, 715, 823, 848
HincII	GTYRAC	1 cut(s)	374
HindII	GTYRAC	1 cut(s)	374
HinfI	GANTC	6 cut(s)	102, 336, 551, 739, 776, 855
HpaII	CCGG	1 cut(s)	471
HphI	GGTGA	2 cut(s)	63, 524
Hpy166II	GTNNAC	1 cut(s)	374
Hpy188I	TCNGA	4 cut(s)	154, 285, 352, 421
Hpy188III	TCNNGA	7 cut(s)	125, 175, 500, 581, 605, 647, 712
Hpy8I	GTNNAC	1 cut(s)	374
HpyAV	CCTTC	2 cut(s)	642, 653
HpyCH4III	ACNGT	3 cut(s)	192, 750, 796
HpyCH4IV	ACGT	2 cut(s)	367, 543
HpyCH4V	TGCA	3 cut(s)	442, 701, 720
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 726
HpyF3I	CTNAG	5 cut(s)	30, 153, 579, 725, 783
HpySE526I	ACGT	2 cut(s)	367, 543
Hsp92II	CATG	6 cut(s)	227, 266, 650, 715, 823, 848
KpnI	GGTACC	1 cut(s)	632
Kzo9I	GATC	5 cut(s)	24, 109, 163, 245, 347
LmnI	GCTCC	1 cut(s)	679
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	2 cut(s)	434, 756
MaeII	ACGT	2 cut(s)	367, 543
MaeIII	GTNAC	2 cut(s)	449, 544
MalI	GATC	5 cut(s)	26, 111, 165, 247, 349
MboI	GATC	5 cut(s)	24, 109, 163, 245, 347
MboII	GAAGA	3 cut(s)	365, 629, 700
MflI	RGATCY	1 cut(s)	245
MhlI	GDGCHC	3 cut(s)	311, 507, 763
MluCI	AATT	3 cut(s)	114, 142, 809
MlyI	GAGTC	2 cut(s)	111, 545
MmeI	TCCRAC	1 cut(s)	496
MnlI	CCTC	9 cut(s)	70, 85, 233, 270, 281, 391, 485, 601, 684
MseI	TTAA	3 cut(s)	317, 564, 684
MslI	CAYNNNNRTG	1 cut(s)	849
MspI	CCGG	1 cut(s)	471
MspR9I	CCNGG	4 cut(s)	341, 471, 489, 837
MvaI	CCWGG	3 cut(s)	341, 489, 837
MvnI	CGCG	1 cut(s)	860
MwoI	GCNNNNNNNGC	2 cut(s)	40, 726
NciI	CCSGG	1 cut(s)	471
NdeII	GATC	5 cut(s)	24, 109, 163, 245, 347
NlaIII	CATG	6 cut(s)	227, 266, 650, 715, 823, 848
NlaIV	GGNNCC	2 cut(s)	173, 630
NmuCI	GTSAC	1 cut(s)	544
NspI	RCATGY	1 cut(s)	227
PagI	TCATGA	2 cut(s)	646, 711
PciI	ACATGT	1 cut(s)	223
PfeI	GAWTC	4 cut(s)	336, 739, 776, 855
PfoI	TCCNGGA	1 cut(s)	469
PleI	GAGTC	2 cut(s)	110, 545
PpsI	GAGTC	2 cut(s)	110, 545
PscI	ACATGT	1 cut(s)	223
Psp6I	CCWGG	3 cut(s)	339, 487, 835
PspGI	CCWGG	3 cut(s)	339, 487, 835
PspN4I	GGNNCC	2 cut(s)	173, 630
PspPI	GGNCC	1 cut(s)	172
PsuI	RGATCY	1 cut(s)	245
RsaI	GTAC	3 cut(s)	194, 432, 630
RsaNI	GTAC	3 cut(s)	193, 431, 629
RseI	CAYNNNNRTG	1 cut(s)	849
SaqAI	TTAA	3 cut(s)	317, 564, 684
Sau3AI	GATC	5 cut(s)	24, 109, 163, 245, 347
Sau96I	GGNCC	1 cut(s)	172
ScaI	AGTACT	1 cut(s)	432
SchI	GAGTC	2 cut(s)	111, 545
ScrFI	CCNGG	4 cut(s)	341, 471, 489, 837
SduI	GDGCHC	3 cut(s)	311, 507, 763
SfaNI	GCATC	1 cut(s)	349
SinI	GGWCC	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	849
SmlI	CTYRAG	2 cut(s)	382, 730
SmoI	CTYRAG	2 cut(s)	382, 730
SpeI	ACTAGT	1 cut(s)	433
Sse9I	AATT	3 cut(s)	114, 142, 809
SsiI	CCGC	1 cut(s)	673
SspMI	CTAG	2 cut(s)	434, 756
StyD4I	CCNGG	4 cut(s)	339, 469, 487, 835
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	3 cut(s)	192, 750, 796
TaiI	ACGT	2 cut(s)	370, 546
TaqI	TCGA	3 cut(s)	112, 346, 827
TasI	AATT	3 cut(s)	114, 142, 809
TatI	WGTACW	2 cut(s)	192, 430
TfiI	GAWTC	4 cut(s)	336, 739, 776, 855
Tru1I	TTAA	3 cut(s)	317, 564, 684
Tru9I	TTAA	3 cut(s)	317, 564, 684
TscAI	CASTG	1 cut(s)	195
TseFI	GTSAC	1 cut(s)	544
Tsp45I	GTSAC	1 cut(s)	544
TspDTI	ATGAA	4 cut(s)	378, 635, 700, 728
TspRI	CASTG	1 cut(s)	195
VpaK11BI	GGWCC	1 cut(s)	172
XapI	RAATTY	2 cut(s)	114, 142
XceI	RCATGY	1 cut(s)	227
XspI	CTAG	2 cut(s)	434, 756
ZrmI	AGTACT	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.