Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005802

Physical Location & Seq

Genomic Coordinates Reverse (-)

43351221 .. 43352951

Gene Structure 1731 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0349000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1731 bp

ATGTCAAGAAGACCACGCAATTCCTCCTCTCTGGTAAACAAACGAAGGAAGATGGAGTTGGACAGAATAAGCAACTTACCAAGTAATGTTACACAAAAATTTTTGTCATATTTGCCGATCAAGGAGGCAGGGAAGACAAGTCTTTTATCAAAAGACTGGAGGTTCAAATGGGCTATGCTTCCCTCTCTTGTTTTTGATCATGAAATAGATGACCCGGACAGTGTGGATCACGTTCTCTTACTTCACTCTGGTCCCATATACTCTTTCAAGCTTTCTGCACAAAACATTATGGACAAAAGTGCTATTAACCGATGGATTCGTCATCTATCAAGACAACCAATCAAACAGTTCATACTGAAAGGGTATTATAATTTTTATAGTAATAGGCGACCTTACGATGTATCTTCCTCTTTGTTTTCTTGTCAAGATTTGACTCATTTAGAGTTAAGCGATTGTTCGCTAAGACTCCCGTGGACTTTCAATGGCTTCAGGATGTTGAAGACCCTTAATATTAAGAGAGTTACTGTGGCCCGAGATGAATTGGAAAAGATGATTGTTTGTAGTCCTTTGCTTGAGAGATTAACTCTACGTGACTTAAAGGGTATCACCCGTCTCAAGATTCACGCACCGAATCTCCAATTCCTTAAAGTTCGAGGAGATTTTGAAGATGTTGAACTTACGAATACCTTAAATCTTGTTCATGTTTCACTAGACCGAAATAGGGCTCATGGGAGAGGGGACAGATTGCTCAACTCGTGTGTTAAGTTGCCTTATATCAAAAGGCTCACAATTGAGGGTTGCATTTTAGAGTGTGCTTCTGGTTCCTTGCCGAAGGAGCTGCGTAGACCATGTCCATATCTGAACTTTCTTTCTATAAACATACGCTTGAATAACTTGGAGGAGATTTCAACTGCTATGTGCCTTCTCAGAAGCTCACCTGCTCTGCAGGAACTAGAAGTTTCAGTTCGCCAACAAAATGAGGAGGCTAGTACTGCTGGAGGAGCAACTTCTTGGTTAAATGACAGCCAGAATTGGGAATGCACCAAACTGCAACGTGTAAAACTGACCGGCTTCTCTGGTGCCCAAGCTGAAGTAGACTTCATCAAATTTCTGTTTTTAAGCTGCCCTGCTCTCCAAGAACTAGAAGTTTCAGTTTACCAAAAAGACGAGACTGTTGTAGGAGAAGTGGACTATTCTTCGTTAAATAACGACCAAAATTTTGCACACACCCAACTGCGACTTTTGAAAGTAACCGACTTTTGTGGTGAAGTAGAATTCATCAAGTTTCTGCTTTTAAGCTCCCCTGCTCTTCAAGAACTACATATTTTGTTTAGAGAGAATGATCATAAGAACAAGATGAGAAACAAGTGGTTAGACGATGCTGCTATGGGAGATGAGGACAACCGGAATTGCACATTCACCCAACTTCGAGTTATGAACATTAGTGGCTTTTCTGGTGCCAAAGCTGAAGTAGGTTTCATCAAATTTTTGCTTACAAGTTCACCTATGCTTGAGAGGATAACTCTTCAACCTGCTTCTGCCAAAGTTTCTTGGGAACTAAGTAAGTTGTTGACCGAGTTCAAGTACAACTCGGTACAGGCAAATTTAAAGTTGTTGGACCCCTACCACTCCTCCCGAGCCGCTAGATGTAGATCCCCAGTTTATTCTGACTCCTCTGAATCACCCTCCAGATCCCCATTCGACTATGACTCTGATCAGTTGTATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0052751 GO:0060359 GO:0070887 GO:0071242 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

576

Amino Acids

66.1

Weight (kDa)

8.8

Isoelectric Point (pI)

55.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	86 - 217	8.5e-13	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	103 - 320	2.4e-16	FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1	PF23622	208 - 384	3.2e-07	At1g61320/AtMIF1, LRR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46200 AT3G46200 AT3G46200 AT3G46200 AT3G46200 AT3G46200
fragaria_vesca	FvH4_3g34680 FvH4_3g34680 FvH4_3g34680 FvH4_3g34680
malus_domestica	MD03G1102800.v1.1 MD11G1116600.v1.1
prunus_persica	Prupe.6G086900_v2.0.a1 Prupe.6G086900_v2.0.a1 Prupe.6G086900_v2.0.a1
pyrus_communis	pycom11g09800
rosa_chinensis	RchiOBHm_Chr5g0062361
rosa_laevigata	RLG00000035553
rosa_multiflora	Rmu_sc0005798.1_g000001 Rmu_sc0018052.1_g000006 Rmu_sc0019705.1_g000003
rosa_roxburghii	Rroxscaffold_1G00018320
rosa_rugosa	Rorug05G0349000
rosa_samantha	Rh5AG408900 Rh5BG422900 Rh5CG446900 Rh5DG437700
rosa_wichuraiana	Rw5G038530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	369
AarI	CACCTGC	1 cut(s)	946
Acc36I	ACCTGC	2 cut(s)	946, 1540
AccB1I	GGYRCC	2 cut(s)	1079, 1457
AccI	GTMKAC	2 cut(s)	844, 1095
AciI	CCGC	1 cut(s)	1641
AclWI	GGATC	3 cut(s)	234, 1647, 1686
AcsI	RAATTY	6 cut(s)	98, 1106, 1216, 1274, 1484, 1603
AcuI	CTGAAG	3 cut(s)	472, 1110, 1488
AfaI	GTAC	3 cut(s)	991, 1586, 1596
AfiI	CCNNNNNNNGG	2 cut(s)	721, 1033
AflIII	ACRYGT	1 cut(s)	1054
AjuI	GAANNNNNNNTTGG	2 cut(s)	41, 73
AluBI	AGCT	7 cut(s)	271, 838, 933, 1088, 1122, 1299, 1466
AluI	AGCT	7 cut(s)	271, 838, 933, 1088, 1122, 1299, 1466
Alw26I	GTCTC	2 cut(s)	617, 1163
AlwI	GGATC	3 cut(s)	234, 1647, 1686
Ama87I	CYCGRG	2 cut(s)	531, 1635
AoxI	GGCC	1 cut(s)	528
ApeKI	GCWGC	3 cut(s)	838, 1122, 1382
ApoI	RAATTY	6 cut(s)	98, 1106, 1216, 1274, 1484, 1603
ArsI	GACNNNNNNTTYG	2 cut(s)	1202, 1234
AspS9I	GGNCC	3 cut(s)	251, 529, 1618
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	6 cut(s)	598, 927, 1277, 1411, 1494, 1674
AvaI	CYCGRG	2 cut(s)	531, 1635
AvaII	GGWCC	2 cut(s)	251, 1618
BaeGI	GKGCMC	1 cut(s)	1084
BanI	GGYRCC	2 cut(s)	1079, 1457
BanII	GRGCYC	1 cut(s)	727
BauI	CACGAG	1 cut(s)	754
BbsI	GAAGAC	3 cut(s)	16, 140, 506
BbvI	GCAGC	3 cut(s)	825, 1109, 1369
BccI	CCATC	2 cut(s)	46, 306
BcgI	CGANNNNNNTGC	2 cut(s)	820, 854
BclI	TGATCA	3 cut(s)	196, 1342, 1714
BcnI	CCSGG	1 cut(s)	215
BcoDI	GTCTC	2 cut(s)	617, 1163
BfaI	CTAG	5 cut(s)	710, 953, 987, 1142, 1644
BfmI	CTRYAG	1 cut(s)	944
BfuAI	ACCTGC	2 cut(s)	946, 1540
BisI	GCNGC	4 cut(s)	839, 1123, 1383, 1641
BlsI	GCNGC	4 cut(s)	840, 1124, 1384, 1642
BmcAI	AGTACT	1 cut(s)	991
Bme1390I	CCNGG	1 cut(s)	215
Bme18I	GGWCC	2 cut(s)	251, 1618
BmeT110I	CYCGRG	2 cut(s)	531, 1635
BmgT120I	GGNCC	3 cut(s)	251, 529, 1618
BmiI	GGNNCC	5 cut(s)	253, 823, 1081, 1459, 1620
BmrFI	CCNGG	1 cut(s)	215
BmrI	ACTGGG	1 cut(s)	1652
BmsI	GCATC	1 cut(s)	1369
BmuI	ACTGGG	1 cut(s)	1652
BpiI	GAAGAC	3 cut(s)	16, 140, 506
BplI	GAGNNNNNCTC	4 cut(s)	568, 600, 1507, 1539
BpmI	CTGGAG	3 cut(s)	178, 1017, 1672
BpuEI	CTTGAG	3 cut(s)	593, 599, 1532
BpuMI	CCSGG	1 cut(s)	215
BsaAI	YACGTR	1 cut(s)	590
BsaBI	GATNNNNATC	1 cut(s)	1651
BsaJI	CCNNGG	1 cut(s)	470
BsaWI	WCCGGW	1 cut(s)	1404
BsaXI	ACNNNNNCTCC	4 cut(s)	618, 648, 1616, 1646
Bsc4I	CCNNNNNNNGG	2 cut(s)	721, 1033
Bse118I	RCCGGY	1 cut(s)	1067
Bse1I	ACTGG	2 cut(s)	161, 1658
Bse8I	GATNNNNATC	1 cut(s)	1651
BseDI	CCNNGG	1 cut(s)	470
BseGI	GGATG	1 cut(s)	498
BseJI	GATNNNNATC	1 cut(s)	1651
BseLI	CCNNNNNNNGG	2 cut(s)	721, 1033
BseMII	CTCAG	1 cut(s)	940
BseNI	ACTGG	2 cut(s)	161, 1658
BseRI	GAGGAG	7 cut(s)	16, 669, 914, 995, 1014, 1621, 1663
BseSI	GKGCMC	1 cut(s)	1084
BseXI	GCAGC	3 cut(s)	825, 1109, 1369
BsgI	GTGCAG	1 cut(s)	261
BshFI	GGCC	1 cut(s)	530
BshNI	GGYRCC	2 cut(s)	1079, 1457
BsiHKCI	CYCGRG	2 cut(s)	531, 1635
BsiSI	CCGG	3 cut(s)	215, 1068, 1405
BslFI	GGGAC	2 cut(s)	237, 752
BslI	CCNNNNNNNGG	2 cut(s)	721, 1033
BsmAI	GTCTC	2 cut(s)	617, 1163
BsmBI	CGTCTC	1 cut(s)	617
BsmFI	GGGAC	2 cut(s)	237, 752
BsmI	GAATGC	1 cut(s)	1043
BsnI	GGCC	1 cut(s)	530
BsoBI	CYCGRG	2 cut(s)	531, 1635
Bsp1286I	GDGCHC	2 cut(s)	727, 1084
Bsp143I	GATC	7 cut(s)	117, 196, 226, 1342, 1652, 1691, 1714
BspACI	CCGC	1 cut(s)	1641
BspANI	GGCC	1 cut(s)	530
BspCNI	CTCAG	1 cut(s)	939
BspHI	TCATGA	1 cut(s)	199
BspLI	GGNNCC	5 cut(s)	253, 823, 1081, 1459, 1620
BspMAI	CTGCAG	1 cut(s)	948
BspMI	ACCTGC	2 cut(s)	946, 1540
BspPI	GGATC	3 cut(s)	234, 1647, 1686
BspQI	GCTCTTC	1 cut(s)	1314
BspT107I	GGYRCC	2 cut(s)	1079, 1457
BsrFI	RCCGGY	1 cut(s)	1067
BsrI	ACTGG	2 cut(s)	161, 1658
BssAI	RCCGGY	1 cut(s)	1067
BssECI	CCNNGG	1 cut(s)	470
BssMI	GATC	7 cut(s)	117, 196, 226, 1342, 1652, 1691, 1714
BssSI	CACGAG	1 cut(s)	754
Bst2BI	CACGAG	1 cut(s)	754
Bst4CI	ACNGT	4 cut(s)	221, 348, 526, 1174
Bst6I	CTCTTC	2 cut(s)	1314, 1530
BstBAI	YACGTR	1 cut(s)	590
BstDEI	CTNAG	3 cut(s)	461, 926, 1559
BstDSI	CCRYGG	1 cut(s)	470
BstF5I	GGATG	1 cut(s)	498
BstKTI	GATC	7 cut(s)	120, 199, 229, 1345, 1655, 1694, 1717
BstMAI	GTCTC	2 cut(s)	617, 1163
BstMBI	GATC	7 cut(s)	117, 196, 226, 1342, 1652, 1691, 1714
BstMWI	GCNNNNNNNGC	3 cut(s)	835, 992, 1001
BstSCI	CCNGG	1 cut(s)	213
BstSFI	CTRYAG	1 cut(s)	944
BstSLI	GKGCMC	1 cut(s)	1084
BstV1I	GCAGC	3 cut(s)	825, 1109, 1369
BstV2I	GAAGAC	3 cut(s)	16, 140, 506
BstX2I	RGATCY	2 cut(s)	1652, 1691
BstYI	RGATCY	2 cut(s)	1652, 1691
BsuRI	GGCC	1 cut(s)	530
BtgI	CCRYGG	1 cut(s)	470
BtsCI	GGATG	1 cut(s)	498
BtsIMutI	CAGTG	1 cut(s)	226
BveI	ACCTGC	2 cut(s)	946, 1540
CciI	TCATGA	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	1067
Cfr13I	GGNCC	3 cut(s)	251, 529, 1618
Csp6I	GTAC	3 cut(s)	990, 1585, 1595
CviAII	CATG	4 cut(s)	200, 701, 728, 849
CviQI	GTAC	3 cut(s)	990, 1585, 1595
DdeI	CTNAG	3 cut(s)	461, 926, 1559
DpnI	GATC	7 cut(s)	119, 198, 228, 1344, 1654, 1693, 1716
DpnII	GATC	7 cut(s)	117, 196, 226, 1342, 1652, 1691, 1714
DraI	TTTAAA	1 cut(s)	1608
Eam1104I	CTCTTC	2 cut(s)	1314, 1530
EarI	CTCTTC	2 cut(s)	1314, 1530
Eco24I	GRGCYC	1 cut(s)	727
Eco47I	GGWCC	2 cut(s)	251, 1618
Eco57I	CTGAAG	3 cut(s)	472, 1110, 1488
Eco88I	CYCGRG	2 cut(s)	531, 1635
EcoRI	GAATTC	1 cut(s)	1274
EcoT38I	GRGCYC	1 cut(s)	727
Esp3I	CGTCTC	1 cut(s)	617
FaeI	CATG	4 cut(s)	203, 704, 731, 852
FaqI	GGGAC	2 cut(s)	237, 752
FatI	CATG	4 cut(s)	199, 700, 727, 848
FbaI	TGATCA	3 cut(s)	196, 1342, 1714
FblI	GTMKAC	2 cut(s)	844, 1095
Fnu4HI	GCNGC	4 cut(s)	839, 1123, 1383, 1641
FokI	GGATG	1 cut(s)	505
FriOI	GRGCYC	1 cut(s)	727
Fsp4HI	GCNGC	4 cut(s)	839, 1123, 1383, 1641
FspBI	CTAG	5 cut(s)	710, 953, 987, 1142, 1644
GluI	GCNGC	4 cut(s)	839, 1123, 1383, 1641
GsuI	CTGGAG	3 cut(s)	178, 1017, 1672
HaeIII	GGCC	1 cut(s)	530
HapII	CCGG	3 cut(s)	215, 1068, 1405
Hin1II	CATG	4 cut(s)	203, 704, 731, 852
HincII	GTYRAC	1 cut(s)	1572
HindII	GTYRAC	1 cut(s)	1572
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	8 cut(s)	316, 433, 465, 619, 631, 1670, 1679, 1709
HpaII	CCGG	3 cut(s)	215, 1068, 1405
HphI	GGTGA	6 cut(s)	598, 927, 1277, 1411, 1494, 1674
Hpy166II	GTNNAC	8 cut(s)	37, 474, 845, 1096, 1156, 1189, 1502, 1572
Hpy188I	TCNGA	5 cut(s)	861, 929, 1669, 1678, 1714
Hpy188III	TCNNGA	9 cut(s)	6, 200, 330, 425, 490, 616, 1313, 1635, 1689
Hpy8I	GTNNAC	8 cut(s)	37, 474, 845, 1096, 1156, 1189, 1502, 1572
HpyAV	CCTTC	3 cut(s)	39, 826, 932
HpyCH4III	ACNGT	4 cut(s)	221, 348, 526, 1174
HpyCH4IV	ACGT	3 cut(s)	231, 589, 1054
HpyCH4V	TGCA	7 cut(s)	278, 801, 946, 1041, 1051, 1223, 1413
HpyF10VI	GCNNNNNNNGC	3 cut(s)	835, 992, 1001
HpyF3I	CTNAG	3 cut(s)	461, 926, 1559
HpySE526I	ACGT	3 cut(s)	231, 589, 1054
Hsp92II	CATG	4 cut(s)	203, 704, 731, 852
Ksp22I	TGATCA	3 cut(s)	196, 1342, 1714
Kzo9I	GATC	7 cut(s)	117, 196, 226, 1342, 1652, 1691, 1714
LguI	GCTCTTC	1 cut(s)	1314
LmnI	GCTCC	3 cut(s)	835, 1001, 1304
Lsp1109I	GCAGC	3 cut(s)	825, 1109, 1369
LweI	GCATC	1 cut(s)	1369
MaeI	CTAG	5 cut(s)	710, 953, 987, 1142, 1644
MaeII	ACGT	3 cut(s)	231, 589, 1054
MaeIII	GTNAC	4 cut(s)	88, 520, 590, 1249
MalI	GATC	7 cut(s)	119, 198, 228, 1344, 1654, 1693, 1716
MboI	GATC	7 cut(s)	117, 196, 226, 1342, 1652, 1691, 1714
MboII	GAAGA	9 cut(s)	21, 61, 145, 396, 511, 677, 1188, 1301, 1517
MfeI	CAATTG	1 cut(s)	789
MflI	RGATCY	2 cut(s)	1652, 1691
MhlI	GDGCHC	2 cut(s)	727, 1084
MlyI	GAGTC	4 cut(s)	427, 459, 1664, 1703
MmeI	TCCRAC	2 cut(s)	39, 1596
MspI	CCGG	3 cut(s)	215, 1068, 1405
MspR9I	CCNGG	1 cut(s)	215
MunI	CAATTG	1 cut(s)	789
Mva1269I	GAATGC	1 cut(s)	1043
MwoI	GCNNNNNNNGC	3 cut(s)	835, 992, 1001
NciI	CCSGG	1 cut(s)	215
NdeII	GATC	7 cut(s)	117, 196, 226, 1342, 1652, 1691, 1714
NlaIII	CATG	4 cut(s)	203, 704, 731, 852
NlaIV	GGNNCC	5 cut(s)	253, 823, 1081, 1459, 1620
NmuCI	GTSAC	1 cut(s)	590
PagI	TCATGA	1 cut(s)	199
PaqCI	CACCTGC	1 cut(s)	946
PciSI	GCTCTTC	1 cut(s)	1314
PctI	GAATGC	1 cut(s)	1043
PfeI	GAWTC	4 cut(s)	316, 619, 631, 1679
PflFI	GACNNNGTC	1 cut(s)	849
PkrI	GCNGC	4 cut(s)	840, 1124, 1384, 1642
PleI	GAGTC	4 cut(s)	427, 459, 1664, 1703
PpsI	GAGTC	4 cut(s)	427, 459, 1664, 1703
Ppu21I	YACGTR	1 cut(s)	590
PsiI	TTATAA	1 cut(s)	369
PspN4I	GGNNCC	5 cut(s)	253, 823, 1081, 1459, 1620
PspPI	GGNCC	3 cut(s)	251, 529, 1618
PstI	CTGCAG	1 cut(s)	948
PsuI	RGATCY	2 cut(s)	1652, 1691
PsyI	GACNNNGTC	1 cut(s)	849
RsaI	GTAC	3 cut(s)	991, 1586, 1596
RsaNI	GTAC	3 cut(s)	990, 1585, 1595
SapI	GCTCTTC	1 cut(s)	1314
SatI	GCNGC	4 cut(s)	839, 1123, 1383, 1641
Sau3AI	GATC	7 cut(s)	117, 196, 226, 1342, 1652, 1691, 1714
Sau96I	GGNCC	3 cut(s)	251, 529, 1618
ScaI	AGTACT	1 cut(s)	991
SchI	GAGTC	4 cut(s)	427, 459, 1664, 1703
ScrFI	CCNGG	1 cut(s)	215
SduI	GDGCHC	2 cut(s)	727, 1084
SfaNI	GCATC	1 cut(s)	1369
SfcI	CTRYAG	1 cut(s)	944
SinI	GGWCC	2 cut(s)	251, 1618
SmlI	CTYRAG	3 cut(s)	572, 614, 1511
SmoI	CTYRAG	3 cut(s)	572, 614, 1511
SsiI	CCGC	1 cut(s)	1641
SspI	AATATT	1 cut(s)	511
SspMI	CTAG	5 cut(s)	710, 953, 987, 1142, 1644
StyD4I	CCNGG	1 cut(s)	213
TaaI	ACNGT	4 cut(s)	221, 348, 526, 1174
TaiI	ACGT	3 cut(s)	234, 592, 1057
TaqI	TCGA	3 cut(s)	652, 1429, 1701
TaqII	GACCGA	2 cut(s)	729, 1589
TatI	WGTACW	2 cut(s)	989, 1584
TauI	GCSGC	1 cut(s)	1643
TfiI	GAWTC	4 cut(s)	316, 619, 631, 1679
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	1 cut(s)	590
TseI	GCWGC	3 cut(s)	838, 1122, 1382
Tsp45I	GTSAC	1 cut(s)	590
TspDTI	ATGAA	8 cut(s)	216, 340, 552, 689, 1090, 1267, 1451, 1468
TspRI	CASTG	1 cut(s)	226
Tth111I	GACNNNGTC	1 cut(s)	849
VpaK11BI	GGWCC	2 cut(s)	251, 1618
XapI	RAATTY	6 cut(s)	98, 1106, 1216, 1274, 1484, 1603
XmiI	GTMKAC	2 cut(s)	844, 1095
XspI	CTAG	5 cut(s)	710, 953, 987, 1142, 1644
ZrmI	AGTACT	1 cut(s)	991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.