Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019705.1

Orthogroup ID

OG0005802

Physical Location & Seq

Genomic Coordinates Reverse (-)

17984 .. 19123

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019705.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atgttcgacagcattgttcgtgaggtggttgaagaaattggagtaccttcagattccctttatgagcaggtgttcataggtatttcccgcaggaagttgaatgtgagaccagctgcatttttcttcatgaaatgcagtctcagctcaaaggaaattcagcaaatgtattctactgcacaagacagctttgagtcaactcagctttatacagtttcaatgattgagttggagaaaatggcatctaaaatgccaggttgccatgaaggcggatttgctctatataagttaatggtagaagctggaagaatgtctgatgcaagagcacaagtactgctgaaagttgtcggcctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0052751 GO:0060359 GO:0070887 GO:0071242 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

13.16

Weight (kDa)

5.82

Isoelectric Point (pI)

58.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46200 AT3G46200 AT3G46200 AT3G46200 AT3G46200 AT3G46200
fragaria_vesca	FvH4_3g34680 FvH4_3g34680 FvH4_3g34680 FvH4_3g34680
malus_domestica	MD03G1102800.v1.1 MD11G1116600.v1.1
prunus_persica	Prupe.6G086900_v2.0.a1 Prupe.6G086900_v2.0.a1 Prupe.6G086900_v2.0.a1
pyrus_communis	pycom11g09800
rosa_chinensis	RchiOBHm_Chr5g0062361
rosa_laevigata	RLG00000035553
rosa_multiflora	Rmu_sc0005798.1_g000001 Rmu_sc0018052.1_g000006 Rmu_sc0019705.1_g000003
rosa_roxburghii	Rroxscaffold_1G00018320
rosa_rugosa	Rorug05G0349000
rosa_samantha	Rh5AG408900 Rh5BG422900 Rh5CG446900 Rh5DG437700
rosa_wichuraiana	Rw5G038530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	58
Acc36I	ACCTGC	1 cut(s)	58
AciI	CCGC	2 cut(s)	88, 267
AcsI	RAATTY	1 cut(s)	153
AcuI	CTGAAG	1 cut(s)	33
AfaI	GTAC	2 cut(s)	45, 330
AgsI	TTSAA	3 cut(s)	32, 100, 216
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	5 cut(s)	113, 144, 186, 202, 299
AluI	AGCT	5 cut(s)	113, 144, 186, 202, 299
Alw21I	GWGCWC	1 cut(s)	325
Alw26I	GTCTC	2 cut(s)	100, 143
AoxI	GGCC	1 cut(s)	346
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	1 cut(s)	100
BciT130I	CCWGG	1 cut(s)	252
BcoDI	GTCTC	2 cut(s)	100, 143
BfaI	CTAG	1 cut(s)	352
BfuAI	ACCTGC	1 cut(s)	58
BglI	GCCNNNNNGGC	1 cut(s)	264
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
BmcAI	AGTACT	1 cut(s)	330
Bme1390I	CCNGG	1 cut(s)	252
BmrFI	CCNGG	1 cut(s)	252
BmsI	GCATC	2 cut(s)	248, 304
BsaI	GGTCTC	1 cut(s)	100
BseBI	CCWGG	1 cut(s)	252
BseMII	CTCAG	2 cut(s)	154, 212
BseXI	GCAGC	1 cut(s)	100
BsgI	GTGCAG	1 cut(s)	159
BshFI	GGCC	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	325
BsmAI	GTCTC	2 cut(s)	100, 143
BsnI	GGCC	1 cut(s)	348
Bso31I	GGTCTC	1 cut(s)	100
Bsp1286I	GDGCHC	1 cut(s)	325
BspACI	CCGC	2 cut(s)	88, 267
BspANI	GGCC	1 cut(s)	348
BspCNI	CTCAG	2 cut(s)	153, 211
BspHI	TCATGA	1 cut(s)	126
BspMI	ACCTGC	1 cut(s)	58
BspTNI	GGTCTC	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	211
BstDEI	CTNAG	2 cut(s)	140, 198
BstMAI	GTCTC	2 cut(s)	100, 143
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 264
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	250
BstV1I	GCAGC	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	348
BveI	ACCTGC	1 cut(s)	58
CciI	TCATGA	1 cut(s)	126
Csp6I	GTAC	2 cut(s)	44, 329
CviAII	CATG	2 cut(s)	127, 260
CviJI	RGCY	6 cut(s)	113, 144, 186, 202, 299, 348
CviKI_1	RGCY	6 cut(s)	113, 144, 186, 202, 299, 348
CviQI	GTAC	2 cut(s)	44, 329
DdeI	CTNAG	2 cut(s)	140, 198
EciI	GGCGGA	1 cut(s)	282
Eco31I	GGTCTC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	250
FaeI	CATG	2 cut(s)	130, 263
FaiI	YATR	7 cut(s)	63, 77, 128, 207, 261, 280, 282
FatI	CATG	2 cut(s)	126, 259
FauI	CCCGC	1 cut(s)	95
Fnu4HI	GCNGC	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	114
FspBI	CTAG	1 cut(s)	352
GluI	GCNGC	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	348
Hin1II	CATG	2 cut(s)	130, 263
HincII	GTYRAC	1 cut(s)	195
HindII	GTYRAC	1 cut(s)	195
HinfI	GANTC	2 cut(s)	53, 191
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	2 cut(s)	52, 313
Hpy188III	TCNNGA	2 cut(s)	20, 127
Hpy8I	GTNNAC	1 cut(s)	195
HpyAV	CCTTC	2 cut(s)	57, 257
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4V	TGCA	4 cut(s)	116, 135, 176, 317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 264
HpyF3I	CTNAG	2 cut(s)	140, 198
Hsp92II	CATG	2 cut(s)	130, 263
LpnPI	CCDG	6 cut(s)	53, 76, 123, 237, 264, 285
Lsp1109I	GCAGC	1 cut(s)	100
LweI	GCATC	2 cut(s)	248, 304
MaeI	CTAG	1 cut(s)	352
MboII	GAAGA	3 cut(s)	44, 115, 315
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	2 cut(s)	36, 153
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	1 cut(s)	16
MseI	TTAA	1 cut(s)	287
MspA1I	CMGCKG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	2 cut(s)	141, 264
NlaIII	CATG	2 cut(s)	130, 263
PagI	TCATGA	1 cut(s)	126
PaqCI	CACCTGC	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	115
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PvuII	CAGCTG	1 cut(s)	113
RsaI	GTAC	2 cut(s)	45, 330
RsaNI	GTAC	2 cut(s)	44, 329
SaqAI	TTAA	1 cut(s)	287
SatI	GCNGC	1 cut(s)	114
ScaI	AGTACT	1 cut(s)	330
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	1 cut(s)	325
SfaNI	GCATC	2 cut(s)	248, 304
Sse9I	AATT	2 cut(s)	36, 153
SsiI	CCGC	2 cut(s)	88, 267
SspMI	CTAG	1 cut(s)	352
StyD4I	CCNGG	1 cut(s)	250
TaaI	ACNGT	1 cut(s)	211
TaqI	TCGA	1 cut(s)	6
TasI	AATT	2 cut(s)	36, 153
TatI	WGTACW	1 cut(s)	328
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	287
Tru9I	TTAA	1 cut(s)	287
TseI	GCWGC	1 cut(s)	113
TspDTI	ATGAA	4 cut(s)	64, 115, 143, 276
XapI	RAATTY	1 cut(s)	153
XspI	CTAG	1 cut(s)	352
ZrmI	AGTACT	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.