Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0005802

Physical Location & Seq

Genomic Coordinates Forward (+)

8798743 .. 8799281

Gene Structure 539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1102800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTTTGACAGCATTGTTCATGAGGTTGTTGAAGAAATTGGAGTACCTTCATCTTCCCTTTCCGAGCAAGTTTTTATCAGTATATCTCGCAGGGAGTTGAATGTGAGGCCAGCTGCTTTTTTCTTCATGAAATGCAATCACAGCTCAAAGGAAATTCAAGAACTGTACTCTAGTGCCCAAGACAGCTTTGAGTCAACTCAGTTCCTTACAGTTCCAGTGTTATCAATTGCAATCAATGACGGTGAATGGCAATTCTGCGGTAACGTTGCTTACAATCCCTTGCTTTTTGTTAATACATTAGACGACCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0052751 GO:0060359 GO:0070887 GO:0071242 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

104

Amino Acids

11.64

Weight (kDa)

4.32

Isoelectric Point (pI)

49.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46200 AT3G46200 AT3G46200 AT3G46200 AT3G46200 AT3G46200
fragaria_vesca	FvH4_3g34680 FvH4_3g34680 FvH4_3g34680 FvH4_3g34680
malus_domestica	MD03G1102800.v1.1 MD11G1116600.v1.1
prunus_persica	Prupe.6G086900_v2.0.a1 Prupe.6G086900_v2.0.a1 Prupe.6G086900_v2.0.a1
pyrus_communis	pycom11g09800
rosa_chinensis	RchiOBHm_Chr5g0062361
rosa_laevigata	RLG00000035553
rosa_multiflora	Rmu_sc0005798.1_g000001 Rmu_sc0018052.1_g000006 Rmu_sc0019705.1_g000003
rosa_roxburghii	Rroxscaffold_1G00018320
rosa_rugosa	Rorug05G0349000
rosa_samantha	Rh5AG408900 Rh5BG422900 Rh5CG446900 Rh5DG437700
rosa_wichuraiana	Rw5G038530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	258
AclI	AACGTT	1 cut(s)	264
AcsI	RAATTY	1 cut(s)	153
AfaI	GTAC	2 cut(s)	45, 167
AgsI	TTSAA	3 cut(s)	32, 100, 158
AluBI	AGCT	3 cut(s)	113, 144, 186
AluI	AGCT	3 cut(s)	113, 144, 186
AoxI	GGCC	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	1 cut(s)	153
AsuHPI	GGTGA	1 cut(s)	254
BaeGI	GKGCMC	1 cut(s)	178
BbvI	GCAGC	1 cut(s)	100
BfaI	CTAG	1 cut(s)	171
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	215
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	1 cut(s)	215
BseSI	GKGCMC	1 cut(s)	178
BseXI	GCAGC	1 cut(s)	100
BshFI	GGCC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	178
BspACI	CCGC	1 cut(s)	258
BspANI	GGCC	1 cut(s)	109
BspCNI	CTCAG	1 cut(s)	211
BspHI	TCATGA	2 cut(s)	19, 126
BsrI	ACTGG	1 cut(s)	215
Bst4CI	ACNGT	3 cut(s)	165, 211, 242
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	1 cut(s)	198
BstMWI	GCNNNNNNNGC	1 cut(s)	141
BstSLI	GKGCMC	1 cut(s)	178
BstV1I	GCAGC	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	111
CciI	TCATGA	2 cut(s)	19, 126
Csp6I	GTAC	2 cut(s)	44, 166
CviAII	CATG	2 cut(s)	20, 127
CviJI	RGCY	4 cut(s)	109, 113, 144, 186
CviKI_1	RGCY	4 cut(s)	109, 113, 144, 186
CviQI	GTAC	2 cut(s)	44, 166
DdeI	CTNAG	1 cut(s)	198
FaeI	CATG	2 cut(s)	23, 130
FaiI	YATR	3 cut(s)	21, 83, 128
FatI	CATG	2 cut(s)	19, 126
Fnu4HI	GCNGC	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	114
FspBI	CTAG	1 cut(s)	171
GluI	GCNGC	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	109
Hin1II	CATG	2 cut(s)	23, 130
HincII	GTYRAC	1 cut(s)	195
HindII	GTYRAC	1 cut(s)	195
HinfI	GANTC	1 cut(s)	191
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	3 cut(s)	20, 127, 158
Hpy8I	GTNNAC	1 cut(s)	195
HpyAV	CCTTC	1 cut(s)	57
HpyCH4III	ACNGT	3 cut(s)	165, 211, 242
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	2 cut(s)	135, 230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	141
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	23, 130
LpnPI	CCDG	3 cut(s)	76, 123, 228
Lsp1109I	GCAGC	1 cut(s)	100
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	260
MboII	GAAGA	3 cut(s)	44, 45, 115
MfeI	CAATTG	1 cut(s)	225
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	4 cut(s)	36, 153, 225, 251
MlyI	GAGTC	1 cut(s)	200
MnlI	CCTC	2 cut(s)	16, 99
MseI	TTAA	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	113
MunI	CAATTG	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	141
NlaIII	CATG	2 cut(s)	23, 130
PagI	TCATGA	2 cut(s)	19, 126
PkrI	GCNGC	1 cut(s)	115
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
Psp1406I	AACGTT	1 cut(s)	264
PvuII	CAGCTG	1 cut(s)	113
RsaI	GTAC	2 cut(s)	45, 167
RsaNI	GTAC	2 cut(s)	44, 166
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	1 cut(s)	114
SchI	GAGTC	1 cut(s)	200
SduI	GDGCHC	1 cut(s)	178
SetI	ASST	6 cut(s)	27, 49, 115, 146, 188, 267
Sse9I	AATT	4 cut(s)	36, 153, 225, 251
SsiI	CCGC	1 cut(s)	258
SspMI	CTAG	1 cut(s)	171
TaaI	ACNGT	3 cut(s)	165, 211, 242
TaiI	ACGT	1 cut(s)	267
TasI	AATT	4 cut(s)	36, 153, 225, 251
TatI	WGTACW	1 cut(s)	165
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	1 cut(s)	222
TseI	GCWGC	1 cut(s)	113
TspDTI	ATGAA	4 cut(s)	8, 39, 115, 143
TspRI	CASTG	1 cut(s)	222
XapI	RAATTY	1 cut(s)	153
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.