Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005802

Physical Location & Seq

Genomic Coordinates Forward (+)

5878464 .. 5884101

Gene Structure 5638 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G086900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGAGAAGGCAGAGACTGAAACGAGCGGTGAGCGCTACAAGCTTCTGCTCTCTTGCCCCTCGGGTCTTTTGCCATCGCAGGTTTCTGTGGTTTTTGATGGAGATTATGATCGAATTCCCCATCCAGACATCAACTTGGAGAATTCTGTTTCTGAGATATGGGATCAAAGGGTTCATAAAAATCCATCGTTGTACAATGGGACAAAGTTCAGGTATGGAAAACACATATGGCATGATGGAGGTGGATCTAACCAAGAGCCTCATGTGTGCCTCCACCTTGGTCTGACAGATTATAGGAATTTTGTGGGAACAAACTTAAATCATTTATGGGAAAGCTTCCTGGTTGCTTCAGAAGATGACGCTATACGTTGTCAACACACGTCAAGTCCATTGGGTAATGGTGCTATCGTGGAGACATCTGACAAGAAAATACTTGTGTTGCAAAGAAGTAACAATGTTGGGGAATTTCCTGGACATTTTGTTTTCCCAGGAGGCCATCCAGAGGAGCCCTCTGCCAGTTCCCCCTTCTTTCCAAGTATACACGTACATGCATATATTATGGGCAGTGGCTGTAAGTTCTTCAGTGCATGGTTCACATCAATGCATTCTCCACATTATCAACCCCAAGAAGTTGGATTAGTATCCCATCATCATGAGGACTTGACAGACTCCAAAGTTATTAACGACAAGGTTTCTCATGAGATGTTTGACAGCATTGTCCGTGAGGTAGTTGAAGAAATTGGAGTACCTTCAGCTTCCCTTCACGAGCAAGTATTCATTGGTATATCCTGCAGGGTGTTGAATGTGCGACCAACTGCATTTTTCTTCATGAAATGCAGTCTCAGCTCAAAGGAAGTTCAGAAGTTGTATGCTACTGCACAAGACAGCTTTGAGTCAACTCAGCTCTTTACAGTTCCAATGATTGACCTAGATAATATGGCATCTAAAATGCCAGGCTGCCATGAAGGTGGATTGGCCTTATATAAGTTGATGGTTGAAGCCGTGAAGAATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0052751 GO:0060359 GO:0070887 GO:0071242 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

339

Amino Acids

37.75

Weight (kDa)

5.68

Isoelectric Point (pI)

47.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46200 AT3G46200 AT3G46200 AT3G46200 AT3G46200 AT3G46200
fragaria_vesca	FvH4_3g34680 FvH4_3g34680 FvH4_3g34680 FvH4_3g34680
malus_domestica	MD03G1102800.v1.1 MD11G1116600.v1.1
prunus_persica	Prupe.6G086900_v2.0.a1 Prupe.6G086900_v2.0.a1 Prupe.6G086900_v2.0.a1
pyrus_communis	pycom11g09800
rosa_chinensis	RchiOBHm_Chr5g0062361
rosa_laevigata	RLG00000035553
rosa_multiflora	Rmu_sc0005798.1_g000001 Rmu_sc0018052.1_g000006 Rmu_sc0019705.1_g000003
rosa_roxburghii	Rroxscaffold_1G00018320
rosa_rugosa	Rorug05G0349000
rosa_samantha	Rh5AG408900 Rh5BG422900 Rh5CG446900 Rh5DG437700
rosa_wichuraiana	Rw5G038530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	716
Acc36I	ACCTGC	1 cut(s)	70
AccBSI	CCGCTC	1 cut(s)	27
AccI	GTMKAC	1 cut(s)	538
AciI	CCGC	1 cut(s)	27
AclWI	GGATC	2 cut(s)	171, 253
AcsI	RAATTY	4 cut(s)	114, 142, 298, 464
AcuI	CTGAAG	3 cut(s)	333, 565, 735
AfaI	GTAC	3 cut(s)	194, 546, 747
AfeI	AGCGCT	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	502
AflIII	ACRYGT	2 cut(s)	378, 541
AgsI	TTSAA	3 cut(s)	734, 802, 998
AjiI	CACGTC	1 cut(s)	381
AjnI	CCWGG	4 cut(s)	339, 469, 487, 952
AluBI	AGCT	6 cut(s)	43, 336, 755, 846, 888, 904
AluI	AGCT	6 cut(s)	43, 336, 755, 846, 888, 904
Alw26I	GTCTC	3 cut(s)	8, 407, 845
AlwI	GGATC	2 cut(s)	171, 253
AlwNI	CAGNNNCTG	2 cut(s)	17, 570
Ama87I	CYCGRG	1 cut(s)	61
Aor51HI	AGCGCT	1 cut(s)	35
AoxI	GGCC	2 cut(s)	493, 975
ApeKI	GCWGC	1 cut(s)	957
ApoI	RAATTY	4 cut(s)	114, 142, 298, 464
AspLEI	GCGC	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	41
AvaI	CYCGRG	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	510
BauI	CACGAG	1 cut(s)	764
BbvI	GCAGC	1 cut(s)	944
BccI	CCATC	8 cut(s)	82, 92, 129, 193, 230, 504, 654, 985
BceAI	ACGGC	1 cut(s)	986
BciT130I	CCWGG	4 cut(s)	341, 471, 489, 954
BciVI	GTATCC	1 cut(s)	652
BcoDI	GTCTC	3 cut(s)	8, 407, 845
BfaI	CTAG	1 cut(s)	929
BfmI	CTRYAG	1 cut(s)	790
BfoI	RGCGCY	1 cut(s)	37
BfuAI	ACCTGC	1 cut(s)	70
BfuI	GTATCC	1 cut(s)	652
BisI	GCNGC	1 cut(s)	958
BlsI	GCNGC	1 cut(s)	959
Bme1390I	CCNGG	4 cut(s)	341, 471, 489, 954
BmeT110I	CYCGRG	1 cut(s)	61
BmgBI	CACGTC	1 cut(s)	381
BmiI	GGNNCC	1 cut(s)	507
BmrFI	CCNGG	4 cut(s)	341, 471, 489, 954
BmsI	GCATC	1 cut(s)	950
BplI	GAGNNNNNCTC	2 cut(s)	494, 526
BsaAI	YACGTR	1 cut(s)	544
BsaBI	GATNNNNATC	2 cut(s)	108, 640
BsaJI	CCNNGG	3 cut(s)	60, 277, 487
Bsc4I	CCNNNNNNNGG	1 cut(s)	502
Bse1I	ACTGG	1 cut(s)	516
Bse8I	GATNNNNATC	2 cut(s)	108, 640
BseBI	CCWGG	4 cut(s)	341, 471, 489, 954
BseDI	CCNNGG	3 cut(s)	60, 277, 487
BseGI	GGATG	2 cut(s)	121, 496
BseJI	GATNNNNATC	2 cut(s)	108, 640
BseLI	CCNNNNNNNGG	1 cut(s)	502
BseMII	CTCAG	3 cut(s)	144, 856, 914
BseNI	ACTGG	1 cut(s)	516
BseRI	GAGGAG	1 cut(s)	518
BseXI	GCAGC	1 cut(s)	944
BsgI	GTGCAG	1 cut(s)	861
BshFI	GGCC	2 cut(s)	495, 977
BsiHKCI	CYCGRG	1 cut(s)	61
BslFI	GGGAC	1 cut(s)	214
BslI	CCNNNNNNNGG	1 cut(s)	502
BsmAI	GTCTC	3 cut(s)	8, 407, 845
BsmFI	GGGAC	1 cut(s)	214
BsmI	GAATGC	1 cut(s)	604
BsnI	GGCC	2 cut(s)	495, 977
BsoBI	CYCGRG	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	510
Bsp1407I	TGTACA	1 cut(s)	192
Bsp143I	GATC	3 cut(s)	109, 163, 245
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	2 cut(s)	495, 977
BspCNI	CTCAG	3 cut(s)	145, 855, 913
BspHI	TCATGA	3 cut(s)	652, 697, 828
BspLI	GGNNCC	1 cut(s)	507
BspMAI	CTGCAG	1 cut(s)	794
BspMI	ACCTGC	1 cut(s)	70
BspPI	GGATC	2 cut(s)	171, 253
BsrBI	CCGCTC	1 cut(s)	27
BsrGI	TGTACA	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	516
BssECI	CCNNGG	3 cut(s)	60, 277, 487
BssMI	GATC	3 cut(s)	109, 163, 245
BssNAI	GTATAC	1 cut(s)	539
BssSI	CACGAG	1 cut(s)	764
BssT1I	CCWWGG	1 cut(s)	277
Bst1107I	GTATAC	1 cut(s)	539
Bst2BI	CACGAG	1 cut(s)	764
Bst2UI	CCWGG	4 cut(s)	341, 471, 489, 954
Bst4CI	ACNGT	1 cut(s)	913
BstAUI	TGTACA	1 cut(s)	192
BstBAI	YACGTR	1 cut(s)	544
BstDEI	CTNAG	3 cut(s)	153, 842, 900
BstF5I	GGATG	2 cut(s)	121, 496
BstH2I	RGCGCY	1 cut(s)	37
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	3 cut(s)	112, 166, 248
BstMAI	GTCTC	3 cut(s)	8, 407, 845
BstMBI	GATC	3 cut(s)	109, 163, 245
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 40, 843
BstNI	CCWGG	4 cut(s)	341, 471, 489, 954
BstNSI	RCATGY	1 cut(s)	551
BstSCI	CCNGG	4 cut(s)	339, 469, 487, 952
BstSFI	CTRYAG	1 cut(s)	790
BstV1I	GCAGC	1 cut(s)	944
BstX2I	RGATCY	1 cut(s)	245
BstXI	CCANNNNNNTGG	2 cut(s)	632, 968
BstYI	RGATCY	1 cut(s)	245
BstZ17I	GTATAC	1 cut(s)	539
BsuI	GTATCC	1 cut(s)	652
BsuRI	GGCC	2 cut(s)	495, 977
BtgZI	GCGATG	1 cut(s)	60
BtrI	CACGTC	1 cut(s)	381
BtsCI	GGATG	2 cut(s)	121, 496
BtsI	GCAGTG	1 cut(s)	571
BtsIMutI	CAGTG	2 cut(s)	571, 589
BveI	ACCTGC	1 cut(s)	70
CaiI	CAGNNNCTG	2 cut(s)	17, 570
CciI	TCATGA	3 cut(s)	652, 697, 828
CfoI	GCGC	1 cut(s)	36
CseI	GACGC	1 cut(s)	368
Csp6I	GTAC	3 cut(s)	193, 545, 746
CviAII	CATG	8 cut(s)	233, 263, 548, 588, 653, 698, 829, 962
CviQI	GTAC	3 cut(s)	193, 545, 746
DdeI	CTNAG	3 cut(s)	153, 842, 900
DpnI	GATC	3 cut(s)	111, 165, 247
DpnII	GATC	3 cut(s)	109, 163, 245
DrdI	GACNNNNNNGTC	1 cut(s)	716
DseDI	GACNNNNNNGTC	1 cut(s)	716
Eco130I	CCWWGG	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	510
Eco47III	AGCGCT	1 cut(s)	35
Eco57I	CTGAAG	3 cut(s)	333, 565, 735
Eco88I	CYCGRG	1 cut(s)	61
EcoRI	GAATTC	2 cut(s)	114, 142
EcoRII	CCWGG	4 cut(s)	339, 469, 487, 952
EcoT14I	CCWWGG	1 cut(s)	277
EcoT22I	ATGCAT	2 cut(s)	553, 606
EcoT38I	GRGCYC	1 cut(s)	510
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	8 cut(s)	236, 266, 551, 591, 656, 701, 832, 965
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	8 cut(s)	232, 262, 547, 587, 652, 697, 828, 961
FauNDI	CATATG	1 cut(s)	227
FblI	GTMKAC	1 cut(s)	538
Fnu4HI	GCNGC	1 cut(s)	958
FokI	GGATG	2 cut(s)	108, 483
FriOI	GRGCYC	1 cut(s)	510
Fsp4HI	GCNGC	1 cut(s)	958
FspBI	CTAG	1 cut(s)	929
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	1 cut(s)	958
HaeII	RGCGCY	1 cut(s)	37
HaeIII	GGCC	2 cut(s)	495, 977
HgaI	GACGC	1 cut(s)	368
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	8 cut(s)	236, 266, 551, 591, 656, 701, 832, 965
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HincII	GTYRAC	2 cut(s)	374, 897
HindII	GTYRAC	2 cut(s)	374, 897
HindIII	AAGCTT	2 cut(s)	41, 334
HinfI	GANTC	2 cut(s)	668, 893
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	4 cut(s)	374, 539, 594, 897
Hpy188I	TCNGA	5 cut(s)	154, 285, 352, 421, 861
Hpy188III	TCNNGA	6 cut(s)	125, 500, 653, 698, 764, 829
Hpy8I	GTNNAC	4 cut(s)	374, 539, 594, 897
HpyAV	CCTTC	4 cut(s)	535, 759, 770, 959
HpyCH4III	ACNGT	1 cut(s)	913
HpyCH4IV	ACGT	3 cut(s)	367, 380, 543
HpyCH4V	TGCA	8 cut(s)	442, 551, 587, 604, 792, 818, 837, 878
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 40, 843
HpyF3I	CTNAG	3 cut(s)	153, 842, 900
HpySE526I	ACGT	3 cut(s)	367, 380, 543
Hsp92II	CATG	8 cut(s)	236, 266, 551, 591, 656, 701, 832, 965
HspAI	GCGC	1 cut(s)	34
Kzo9I	GATC	3 cut(s)	109, 163, 245
LmnI	GCTCC	1 cut(s)	505
Lsp1109I	GCAGC	1 cut(s)	944
LweI	GCATC	1 cut(s)	950
MaeI	CTAG	1 cut(s)	929
MaeII	ACGT	3 cut(s)	367, 380, 543
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	3 cut(s)	111, 165, 247
MbiI	CCGCTC	1 cut(s)	27
MboI	GATC	3 cut(s)	109, 163, 245
MboII	GAAGA	4 cut(s)	365, 571, 746, 817
MflI	RGATCY	1 cut(s)	245
MhlI	GDGCHC	1 cut(s)	510
MluCI	AATT	5 cut(s)	114, 142, 298, 464, 738
MlyI	GAGTC	2 cut(s)	662, 902
MmeI	TCCRAC	1 cut(s)	613
MnlI	CCTC	9 cut(s)	70, 233, 270, 281, 485, 496, 520, 649, 718
Mph1103I	ATGCAT	2 cut(s)	553, 606
MseI	TTAA	2 cut(s)	317, 681
MslI	CAYNNNNRTG	4 cut(s)	546, 599, 651, 966
MspR9I	CCNGG	4 cut(s)	341, 471, 489, 954
Mva1269I	GAATGC	1 cut(s)	604
MvaI	CCWGG	4 cut(s)	341, 471, 489, 954
MwoI	GCNNNNNNNGC	3 cut(s)	33, 40, 843
NdeI	CATATG	1 cut(s)	227
NdeII	GATC	3 cut(s)	109, 163, 245
NlaIII	CATG	8 cut(s)	236, 266, 551, 591, 656, 701, 832, 965
NlaIV	GGNNCC	1 cut(s)	507
NsiI	ATGCAT	2 cut(s)	553, 606
NspI	RCATGY	1 cut(s)	551
PagI	TCATGA	3 cut(s)	652, 697, 828
PctI	GAATGC	1 cut(s)	604
PfoI	TCCNGGA	1 cut(s)	469
PkrI	GCNGC	1 cut(s)	959
PleI	GAGTC	2 cut(s)	662, 901
PpsI	GAGTC	2 cut(s)	662, 901
Ppu21I	YACGTR	1 cut(s)	544
Psp6I	CCWGG	4 cut(s)	339, 469, 487, 952
PspGI	CCWGG	4 cut(s)	339, 469, 487, 952
PspN4I	GGNNCC	1 cut(s)	507
PstI	CTGCAG	1 cut(s)	794
PstNI	CAGNNNCTG	2 cut(s)	17, 570
PsuI	RGATCY	1 cut(s)	245
RsaI	GTAC	3 cut(s)	194, 546, 747
RsaNI	GTAC	3 cut(s)	193, 545, 746
RseI	CAYNNNNRTG	4 cut(s)	546, 599, 651, 966
SaqAI	TTAA	2 cut(s)	317, 681
SatI	GCNGC	1 cut(s)	958
Sau3AI	GATC	3 cut(s)	109, 163, 245
SbfI	CCTGCAGG	1 cut(s)	794
SchI	GAGTC	2 cut(s)	662, 902
ScrFI	CCNGG	4 cut(s)	341, 471, 489, 954
SdaI	CCTGCAGG	1 cut(s)	794
SduI	GDGCHC	1 cut(s)	510
SfaNI	GCATC	1 cut(s)	950
SfcI	CTRYAG	1 cut(s)	790
SmiMI	CAYNNNNRTG	4 cut(s)	546, 599, 651, 966
Sse8387I	CCTGCAGG	1 cut(s)	794
Sse9I	AATT	5 cut(s)	114, 142, 298, 464, 738
SsiI	CCGC	1 cut(s)	27
SspMI	CTAG	1 cut(s)	929
StyD4I	CCNGG	4 cut(s)	339, 469, 487, 952
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	1 cut(s)	913
TaiI	ACGT	3 cut(s)	370, 383, 546
TaqI	TCGA	1 cut(s)	112
TasI	AATT	5 cut(s)	114, 142, 298, 464, 738
TatI	WGTACW	1 cut(s)	192
Tru1I	TTAA	2 cut(s)	317, 681
Tru9I	TTAA	2 cut(s)	317, 681
TscAI	CASTG	2 cut(s)	571, 589
TseI	GCWGC	1 cut(s)	957
TspDTI	ATGAA	5 cut(s)	164, 766, 817, 845, 978
TspGWI	ACGGA	1 cut(s)	710
TspRI	CASTG	2 cut(s)	571, 589
XapI	RAATTY	4 cut(s)	114, 142, 298, 464
XceI	RCATGY	1 cut(s)	551
XmiI	GTMKAC	1 cut(s)	538
XspI	CTAG	1 cut(s)	929
Zsp2I	ATGCAT	2 cut(s)	553, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.