AT3G47430

Peroxisomal biogenesis factor 11 (PEX11)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013268
Physical Location & Seq
Forward (+)
17480521 .. 17481800
1280 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G47430.1

Sequence Viewer

Length: 684 bp
ATGTCTTTGGACACTGTGGACAAACTGGTGGTGTTCTTGGCCAAGAGAGACGGAATAGACAAGCTTGTGAAGACATTCCAATACGTGGCCAAGCTCGCGTGCTGGCATGTTGAAGCCACACGACCCGAAGCCGCCGATAGGTTCAAGAAGTGGGAGGTCGCCTCCGGTCTCAGCCGCAAAGCCTTCAGGACCGGGAGATCTCTCACGGGGTTCAATGCGCTGAGACGAAACCCCGGGGCAACCCCGATGATCCGTTTCTTGGCGGTCCTAGCCAATTCAGGGGAAATGGTTTACTTCTTCTTTGATCATTTTCTTTGGTTATCAAGAATTGGTTCAATAGACGCCAAGCTCGCCAAGAAAATGAGTTTCATATCCGCTTTTGGCGAATCTTTCGGCTACACTTTCTTCATCATCATTGATTGCATCTTCATAAAGCAAAGACTCAAATCCTTAAAAAAGCTCCAGCATTCGACCGATGAACCGAAAGAAGAAATCGGCGCCAAAATTAGCGAGATTCGGGGAGATATAGTAATGAGGTTGATGGGAATTTCAGCCAACGTTGCGGATTTACTTATAGCATTGGCAGAAATTCACCCAAACCCCTTTTGTAACCACACCATTACACTCGGTATAAGCGGTTTAGTTTCAGCTTGGGCCGGTTGGTATAGGAACTGGCCATCGTGA

Protein Analysis

227

Amino Acids

25.6

Weight (kDa)

9.65

Isoelectric Point (pI)

28.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PEX11 PF05648 6 - 225 1.3e-59 Peroxisomal biogenesis factor 11 (PEX11)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0013268)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47430
fragaria_vesca FvH4_7g27470
malus_domestica MD01G1182600.v1.1 MD07G1253300.v1.1
prunus_persica Prupe.2G276800_v2.0.a1
pyrus_communis pycom01g19280
rosa_chinensis RchiOBHm_Chr1g0374261
rosa_laevigata RLG00000026748
rosa_multiflora Rmu_co8391081.1_g000001 Rmu_sc0039395.1_g000001
rosa_roxburghii Rroxscaffold_4G00283610
rosa_rugosa Rorug01G0382400
rosa_samantha Rh1AG393100 Rh1BG357300 Rh1CG370300 Rh1DG387700
rosa_wichuraiana Rw1G034060 Rw1G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 497
AccB7I CCANNNNNTGG 1 cut(s) 85
AccII CGCG 1 cut(s) 98
AciI CCGC 6 cut(s) 132, 175, 263, 375, 563, 636
AclI AACGTT 1 cut(s) 558
AclWI GGATC 1 cut(s) 244
AcoI YGGCCR 3 cut(s) 39, 87, 674
AcsI RAATTY 2 cut(s) 546, 588
AcuI CTGAAG 1 cut(s) 169
AcyI GRCGYC 2 cut(s) 342, 498
AfiI CCNNNNNNNGG 4 cut(s) 85, 138, 259, 279
AgsI TTSAA 4 cut(s) 113, 145, 214, 336
AluBI AGCT 5 cut(s) 64, 94, 349, 460, 650
AluI AGCT 5 cut(s) 64, 94, 349, 460, 650
Alw26I GTCTC 3 cut(s) 42, 173, 217
AlwI GGATC 1 cut(s) 244
Ama87I CYCGRG 1 cut(s) 233
AoxI GGCC 4 cut(s) 39, 87, 654, 674
ApoI RAATTY 2 cut(s) 546, 588
Asp700I GAANNNNTTC 2 cut(s) 74, 331
AspLEI GCGC 2 cut(s) 220, 500
AspS9I GGNCC 3 cut(s) 189, 265, 654
AsuC2I CCSGG 3 cut(s) 193, 234, 235
AsuHPI GGTGA 1 cut(s) 584
AvaI CYCGRG 1 cut(s) 233
AvaII GGWCC 2 cut(s) 189, 265
BalI TGGCCA 3 cut(s) 41, 89, 676
BanI GGYRCC 1 cut(s) 497
BbsI GAAGAC 1 cut(s) 77
BccI CCATC 1 cut(s) 535
BclI TGATCA 1 cut(s) 304
BcnI CCSGG 3 cut(s) 193, 234, 235
BcoDI GTCTC 3 cut(s) 42, 173, 217
BfaI CTAG 1 cut(s) 269
BfoI RGCGCY 1 cut(s) 501
BglII AGATCT 1 cut(s) 197
BisI GCNGC 2 cut(s) 132, 175
BlsI GCNGC 2 cut(s) 133, 176
Bme1390I CCNGG 3 cut(s) 193, 234, 235
Bme18I GGWCC 2 cut(s) 189, 265
BmeT110I CYCGRG 1 cut(s) 233
BmgT120I GGNCC 3 cut(s) 189, 265, 654
BmiI GGNNCC 1 cut(s) 499
BmrFI CCNGG 3 cut(s) 193, 234, 235
BmsI GCATC 1 cut(s) 432
BpiI GAAGAC 1 cut(s) 77
BplI GAGNNNNNCTC 2 cut(s) 146, 178
BpmI CTGGAG 1 cut(s) 446
BpuMI CCSGG 3 cut(s) 193, 234, 235
BsaAI YACGTR 1 cut(s) 85
BsaHI GRCGYC 2 cut(s) 342, 498
BsaI GGTCTC 1 cut(s) 173
BsaJI CCNNGG 3 cut(s) 232, 233, 234
BsaWI WCCGGW 1 cut(s) 164
BsaXI ACNNNNNCTCC 2 cut(s) 513, 543
Bsc4I CCNNNNNNNGG 4 cut(s) 85, 138, 259, 279
Bse118I RCCGGY 1 cut(s) 656
Bse1I ACTGG 2 cut(s) 30, 677
BseDI CCNNGG 3 cut(s) 232, 233, 234
BseLI CCNNNNNNNGG 4 cut(s) 85, 138, 259, 279
BseMII CTCAG 2 cut(s) 184, 212
BseNI ACTGG 2 cut(s) 30, 677
Bsh1236I CGCG 1 cut(s) 98
Bsh1285I CGRYCG 1 cut(s) 474
BshFI GGCC 4 cut(s) 41, 89, 656, 676
BshNI GGYRCC 1 cut(s) 497
BsiEI CGRYCG 1 cut(s) 474
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 4 cut(s) 165, 192, 234, 657
BslI CCNNNNNNNGG 4 cut(s) 85, 138, 259, 279
BsmAI GTCTC 3 cut(s) 42, 173, 217
BsmBI CGTCTC 2 cut(s) 42, 217
BsmI GAATGC 1 cut(s) 466
BsnI GGCC 4 cut(s) 41, 89, 656, 676
Bso31I GGTCTC 1 cut(s) 173
BsoBI CYCGRG 1 cut(s) 233
Bsp143I GATC 3 cut(s) 197, 249, 304
BspACI CCGC 6 cut(s) 132, 175, 263, 375, 563, 636
BspANI GGCC 4 cut(s) 41, 89, 656, 676
BspCNI CTCAG 2 cut(s) 183, 213
BspFNI CGCG 1 cut(s) 98
BspLI GGNNCC 1 cut(s) 499
BspPI GGATC 1 cut(s) 244
BspT107I GGYRCC 1 cut(s) 497
BspTNI GGTCTC 1 cut(s) 173
BsrFI RCCGGY 1 cut(s) 656
BsrI ACTGG 2 cut(s) 30, 677
BssAI RCCGGY 1 cut(s) 656
BssECI CCNNGG 3 cut(s) 232, 233, 234
BssMI GATC 3 cut(s) 197, 249, 304
BssNI GRCGYC 2 cut(s) 342, 498
Bst4CI ACNGT 1 cut(s) 16
BstACI GRCGYC 2 cut(s) 342, 498
BstBAI YACGTR 1 cut(s) 85
BstC8I GCNNGC 4 cut(s) 96, 100, 104, 351
BstDEI CTNAG 2 cut(s) 170, 221
BstFNI CGCG 1 cut(s) 98
BstH2I RGCGCY 1 cut(s) 501
BstHHI GCGC 2 cut(s) 220, 500
BstKTI GATC 3 cut(s) 200, 252, 307
BstMAI GTCTC 3 cut(s) 42, 173, 217
BstMBI GATC 3 cut(s) 197, 249, 304
BstMCI CGRYCG 1 cut(s) 474
BstMWI GCNNNNNNNGC 4 cut(s) 95, 269, 350, 560
BstNSI RCATGY 1 cut(s) 110
BstSCI CCNGG 3 cut(s) 191, 232, 233
BstUI CGCG 1 cut(s) 98
BstV2I GAAGAC 1 cut(s) 77
BstX2I RGATCY 1 cut(s) 197
BstYI RGATCY 1 cut(s) 197
BsuRI GGCC 4 cut(s) 41, 89, 656, 676
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 4 cut(s) 96, 100, 104, 351
CfoI GCGC 2 cut(s) 220, 500
Cfr10I RCCGGY 1 cut(s) 656
Cfr13I GGNCC 3 cut(s) 189, 265, 654
Cfr9I CCCGGG 1 cut(s) 233
CseI GACGC 1 cut(s) 350
CviAII CATG 1 cut(s) 107
DdeI CTNAG 2 cut(s) 170, 221
DinI GGCGCC 1 cut(s) 499
DpnI GATC 3 cut(s) 199, 251, 306
DpnII GATC 3 cut(s) 197, 249, 304
EaeI YGGCCR 3 cut(s) 39, 87, 674
Eco31I GGTCTC 1 cut(s) 173
Eco47I GGWCC 2 cut(s) 189, 265
Eco57I CTGAAG 1 cut(s) 169
Eco88I CYCGRG 1 cut(s) 233
EgeI GGCGCC 1 cut(s) 499
EheI GGCGCC 1 cut(s) 499
Esp3I CGTCTC 2 cut(s) 42, 217
FaeI CATG 1 cut(s) 110
FaiI YATR 7 cut(s) 108, 371, 431, 527, 575, 632, 666
FatI CATG 1 cut(s) 106
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 2 cut(s) 132, 175
Fsp4HI GCNGC 2 cut(s) 132, 175
FspBI CTAG 1 cut(s) 269
GlaI GCGC 2 cut(s) 219, 499
GluI GCNGC 2 cut(s) 132, 175
GsuI CTGGAG 1 cut(s) 446
HaeII RGCGCY 1 cut(s) 501
HaeIII GGCC 4 cut(s) 41, 89, 656, 676
HapII CCGG 4 cut(s) 165, 192, 234, 657
HgaI GACGC 1 cut(s) 350
HhaI GCGC 2 cut(s) 220, 500
Hin1I GRCGYC 2 cut(s) 342, 498
Hin1II CATG 1 cut(s) 110
Hin6I GCGC 2 cut(s) 218, 498
HinP1I GCGC 2 cut(s) 218, 498
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 3 cut(s) 386, 441, 514
HpaII CCGG 4 cut(s) 165, 192, 234, 657
HphI GGTGA 1 cut(s) 584
Hpy166II GTNNAC 2 cut(s) 19, 292
Hpy188III TCNNGA 4 cut(s) 145, 187, 324, 681
Hpy8I GTNNAC 2 cut(s) 19, 292
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4IV ACGT 2 cut(s) 84, 558
HpyCH4V TGCA 1 cut(s) 423
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 269, 350, 560
HpyF3I CTNAG 2 cut(s) 170, 221
HpySE526I ACGT 2 cut(s) 84, 558
Hsp92I GRCGYC 2 cut(s) 342, 498
Hsp92II CATG 1 cut(s) 110
HspAI GCGC 2 cut(s) 218, 498
KasI GGCGCC 1 cut(s) 497
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 3 cut(s) 197, 249, 304
LmnI GCTCC 1 cut(s) 465
LweI GCATC 1 cut(s) 432
MaeI CTAG 1 cut(s) 269
MaeII ACGT 2 cut(s) 84, 558
MaeIII GTNAC 1 cut(s) 608
MalI GATC 3 cut(s) 199, 251, 306
MboI GATC 3 cut(s) 197, 249, 304
MboII GAAGA 5 cut(s) 82, 289, 397, 418, 500
MflI RGATCY 1 cut(s) 197
MlsI TGGCCA 3 cut(s) 41, 89, 676
MluCI AATT 5 cut(s) 274, 327, 504, 546, 588
MluNI TGGCCA 3 cut(s) 41, 89, 676
Mly113I GGCGCC 1 cut(s) 498
MlyI GAGTC 1 cut(s) 435
MnlI CCTC 3 cut(s) 148, 172, 528
Mox20I TGGCCA 3 cut(s) 41, 89, 676
MroXI GAANNNNTTC 2 cut(s) 74, 331
MscI TGGCCA 3 cut(s) 41, 89, 676
MseI TTAA 1 cut(s) 452
Msp20I TGGCCA 3 cut(s) 41, 89, 676
MspI CCGG 4 cut(s) 165, 192, 234, 657
MspR9I CCNGG 3 cut(s) 193, 234, 235
Mva1269I GAATGC 1 cut(s) 466
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 4 cut(s) 95, 269, 350, 560
NarI GGCGCC 1 cut(s) 498
NciI CCSGG 3 cut(s) 193, 234, 235
NdeII GATC 3 cut(s) 197, 249, 304
NlaIII CATG 1 cut(s) 110
NlaIV GGNNCC 1 cut(s) 499
NspI RCATGY 1 cut(s) 110
PctI GAATGC 1 cut(s) 466
PdmI GAANNNNTTC 2 cut(s) 74, 331
PfeI GAWTC 2 cut(s) 386, 514
PflMI CCANNNNNTGG 1 cut(s) 85
PkrI GCNGC 2 cut(s) 133, 176
PleI GAGTC 1 cut(s) 435
PluTI GGCGCC 1 cut(s) 501
PpsI GAGTC 1 cut(s) 435
Ppu21I YACGTR 1 cut(s) 85
Psp1406I AACGTT 1 cut(s) 558
PspN4I GGNNCC 1 cut(s) 499
PspPI GGNCC 3 cut(s) 189, 265, 654
PsuI RGATCY 1 cut(s) 197
SaqAI TTAA 1 cut(s) 452
SatI GCNGC 2 cut(s) 132, 175
Sau3AI GATC 3 cut(s) 197, 249, 304
Sau96I GGNCC 3 cut(s) 189, 265, 654
SchI GAGTC 1 cut(s) 435
ScrFI CCNGG 3 cut(s) 193, 234, 235
SfaNI GCATC 1 cut(s) 432
SfoI GGCGCC 1 cut(s) 499
SinI GGWCC 2 cut(s) 189, 265
SmaI CCCGGG 1 cut(s) 235
Sse9I AATT 5 cut(s) 274, 327, 504, 546, 588
SsiI CCGC 6 cut(s) 132, 175, 263, 375, 563, 636
SspDI GGCGCC 1 cut(s) 497
SspMI CTAG 1 cut(s) 269
StyD4I CCNGG 3 cut(s) 191, 232, 233
TaaI ACNGT 1 cut(s) 16
TaiI ACGT 2 cut(s) 87, 561
TaqI TCGA 1 cut(s) 470
TaqII GACCGA 1 cut(s) 488
TasI AATT 5 cut(s) 274, 327, 504, 546, 588
TauI GCSGC 2 cut(s) 134, 177
TfiI GAWTC 2 cut(s) 386, 514
Tru1I TTAA 1 cut(s) 452
Tru9I TTAA 1 cut(s) 452
TscAI CASTG 1 cut(s) 19
TspDTI ATGAA 4 cut(s) 358, 397, 418, 492
TspGWI ACGGA 2 cut(s) 66, 242
TspMI CCCGGG 1 cut(s) 233
TspRI CASTG 1 cut(s) 19
Van91I CCANNNNNTGG 1 cut(s) 85
VpaK11BI GGWCC 2 cut(s) 189, 265
XapI RAATTY 2 cut(s) 546, 588
XceI RCATGY 1 cut(s) 110
XmaI CCCGGG 1 cut(s) 233
XmnI GAANNNNTTC 2 cut(s) 74, 331
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.