Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0013268

Physical Location & Seq

Genomic Coordinates Reverse (-)

20512862 .. 20513936

Gene Structure 1075 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g27470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAATGACACAGTAGACAAGCTAGTCATCTTCCTAGCAAAGAGAGATGGCATAGACAAGCTTGTCAAGACGTTCCAATATGTCTCCAAGCTTGTGCACTGGCATGTCGAGTCCACTAACCCGAAGATGGCCGAGAGGTTCAAGCAGTGGGAGGTTTCGTCTGGCCTTAGCCGAAAGGCTTTTCGGACTGGAAGGTTTCTCACTGGATTCAACGCAATGAGACGTAGCCCTGGCTCAACGCCGACTCTTAGGTTCTTGGCTGTTCTTGCTAATGCTGGTGAGATGATATACTTCTTTTTTGACCATTTTCTTTGGTTGTCAAAAATTGGGACTTTAGACCCAAGTTTGGCTAGAAAGATGAGCTTCATATCCGCATTTGGTGAGTCCTTTGGGTACATTTTCTTCATTGTGTCTGATTTTATCGCGCTAAAAGAAGGGCTCGAGCAAGAGAGGAAGGTTATGAGTTTGGAGGACAAGTCCATTGAGAAGAAGAATGAGAGCTTAAGAAAGATTAGAAGTGACAGGGTGATGAGGCTAATGGCTGTGGCAGCTAATGTTGCAGACTTGTTTATTGCACTTGCTGATATCGAGCCTAATCCATTCTGCAACCACACTGTCACTCTTGGTATCAGTGGATTGGTCTCTGCTTGGTCCGGCTGGTATAGAAATTGGCCCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0006996 GO:0007031 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016559 GO:0031090 GO:0031903 GO:0032535 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

PEX11

Protein Analysis

227

Amino Acids

25.82

Weight (kDa)

9.64

Isoelectric Point (pI)

34.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEX11	PF05648	5 - 224	1.2e-59	Peroxisomal biogenesis factor 11 (PEX11)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47430
fragaria_vesca	FvH4_7g27470
malus_domestica	MD01G1182600.v1.1 MD07G1253300.v1.1
prunus_persica	Prupe.2G276800_v2.0.a1
pyrus_communis	pycom01g19280
rosa_chinensis	RchiOBHm_Chr1g0374261
rosa_laevigata	RLG00000026748
rosa_multiflora	Rmu_co8391081.1_g000001 Rmu_sc0039395.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283610
rosa_rugosa	Rorug01G0382400
rosa_samantha	Rh1AG393100 Rh1BG357300 Rh1CG370300 Rh1DG387700
rosa_wichuraiana	Rw1G034060 Rw1G034280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	23, 62
AccI	GTMKAC	1 cut(s)	15
AccII	CGCG	1 cut(s)	425
AciI	CCGC	1 cut(s)	372
AcoI	YGGCCR	1 cut(s)	129
AfaI	GTAC	1 cut(s)	395
AfiI	CCNNNNNNNGG	2 cut(s)	127, 346
AflII	CTTAAG	1 cut(s)	502
AgsI	TTSAA	2 cut(s)	142, 211
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	6 cut(s)	22, 61, 91, 363, 501, 551
AluI	AGCT	6 cut(s)	22, 61, 91, 363, 501, 551
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	3 cut(s)	88, 214, 646
Alw44I	GTGCAC	1 cut(s)	95
Ama87I	CYCGRG	1 cut(s)	440
AoxI	GGCC	3 cut(s)	129, 163, 671
ApaLI	GTGCAC	1 cut(s)	95
ApeKI	GCWGC	1 cut(s)	548
AspLEI	GCGC	1 cut(s)	427
AspS9I	GGNCC	2 cut(s)	651, 672
AsuHPI	GGTGA	3 cut(s)	290, 392, 538
AvaI	CYCGRG	1 cut(s)	440
AvaII	GGWCC	1 cut(s)	651
BaeGI	GKGCMC	1 cut(s)	99
BanII	GRGCYC	1 cut(s)	441
BarI	GAAGNNNNNNTAC	2 cut(s)	386, 418
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	560
BccI	CCATC	2 cut(s)	41, 121
BciT130I	CCWGG	1 cut(s)	231
BcoDI	GTCTC	3 cut(s)	88, 214, 646
BfaI	CTAG	3 cut(s)	23, 35, 351
BfrI	CTTAAG	1 cut(s)	502
BisI	GCNGC	1 cut(s)	549
BlsI	GCNGC	1 cut(s)	550
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	1 cut(s)	651
BmeT110I	CYCGRG	1 cut(s)	440
BmgT120I	GGNCC	2 cut(s)	651, 672
BmrFI	CCNGG	1 cut(s)	231
Bpu10I	CCTNAGC	1 cut(s)	167
BsaI	GGTCTC	1 cut(s)	646
BsaJI	CCNNGG	1 cut(s)	229
BsaXI	ACNNNNNCTCC	4 cut(s)	143, 173, 461, 491
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 346
Bse1I	ACTGG	3 cut(s)	104, 193, 208
Bse3DI	GCAATG	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	229
BseLI	CCNNNNNNNGG	2 cut(s)	127, 346
BseMI	GCAATG	1 cut(s)	222
BseNI	ACTGG	3 cut(s)	104, 193, 208
BseSI	GKGCMC	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	560
Bsh1236I	CGCG	1 cut(s)	425
BshFI	GGCC	3 cut(s)	131, 165, 673
BsiHKAI	GWGCWC	1 cut(s)	99
BsiHKCI	CYCGRG	1 cut(s)	440
BsiSI	CCGG	1 cut(s)	654
BslFI	GGGAC	1 cut(s)	343
BslI	CCNNNNNNNGG	2 cut(s)	127, 346
BsmAI	GTCTC	3 cut(s)	88, 214, 646
BsmBI	CGTCTC	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	343
BsnI	GGCC	3 cut(s)	131, 165, 673
Bso31I	GGTCTC	1 cut(s)	646
BsoBI	CYCGRG	1 cut(s)	440
Bsp1286I	GDGCHC	2 cut(s)	99, 441
BspACI	CCGC	1 cut(s)	372
BspANI	GGCC	3 cut(s)	131, 165, 673
BspFNI	CGCG	1 cut(s)	425
BspTI	CTTAAG	1 cut(s)	502
BspTNI	GGTCTC	1 cut(s)	646
BsrDI	GCAATG	1 cut(s)	222
BsrI	ACTGG	3 cut(s)	104, 193, 208
BssECI	CCNNGG	1 cut(s)	229
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	2 cut(s)	13, 616
BstAFI	CTTAAG	1 cut(s)	502
BstDEI	CTNAG	2 cut(s)	167, 248
BstFNI	CGCG	1 cut(s)	425
BstHHI	GCGC	1 cut(s)	427
BstMAI	GTCTC	3 cut(s)	88, 214, 646
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 548, 557
BstNI	CCWGG	1 cut(s)	231
BstNSI	RCATGY	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	229
BstSLI	GKGCMC	1 cut(s)	99
BstUI	CGCG	1 cut(s)	425
BstV1I	GCAGC	1 cut(s)	560
BsuRI	GGCC	3 cut(s)	131, 165, 673
BtsI	GCAGTG	1 cut(s)	152
BtsIMutI	CAGTG	5 cut(s)	97, 152, 201, 612, 637
CfoI	GCGC	1 cut(s)	427
Cfr13I	GGNCC	2 cut(s)	651, 672
Csp6I	GTAC	1 cut(s)	394
CviAII	CATG	1 cut(s)	104
CviQI	GTAC	1 cut(s)	394
DdeI	CTNAG	2 cut(s)	167, 248
DrdI	GACNNNNNNGTC	2 cut(s)	23, 62
DseDI	GACNNNNNNGTC	2 cut(s)	23, 62
EaeI	YGGCCR	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	441
Eco31I	GGTCTC	1 cut(s)	646
Eco32I	GATATC	1 cut(s)	586
Eco47I	GGWCC	1 cut(s)	651
Eco88I	CYCGRG	1 cut(s)	440
EcoRII	CCWGG	1 cut(s)	229
EcoRV	GATATC	1 cut(s)	586
EcoT38I	GRGCYC	1 cut(s)	441
Esp3I	CGTCTC	1 cut(s)	214
FaeI	CATG	1 cut(s)	107
FaiI	YATR	8 cut(s)	53, 81, 105, 289, 368, 461, 663, 679
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	1 cut(s)	103
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	1 cut(s)	549
FriOI	GRGCYC	1 cut(s)	441
Fsp4HI	GCNGC	1 cut(s)	549
FspBI	CTAG	3 cut(s)	23, 35, 351
GlaI	GCGC	1 cut(s)	426
GluI	GCNGC	1 cut(s)	549
HaeIII	GGCC	3 cut(s)	131, 165, 673
HapII	CCGG	1 cut(s)	654
HhaI	GCGC	1 cut(s)	427
Hin1II	CATG	1 cut(s)	107
Hin6I	GCGC	1 cut(s)	425
HinP1I	GCGC	1 cut(s)	425
HindIII	AAGCTT	2 cut(s)	59, 89
HinfI	GANTC	4 cut(s)	110, 207, 244, 383
HpaII	CCGG	1 cut(s)	654
HphI	GGTGA	3 cut(s)	290, 392, 538
Hpy166II	GTNNAC	3 cut(s)	16, 97, 114
Hpy188I	TCNGA	2 cut(s)	186, 415
Hpy188III	TCNNGA	1 cut(s)	67
Hpy8I	GTNNAC	3 cut(s)	16, 97, 114
HpyAV	CCTTC	3 cut(s)	186, 428, 448
HpyCH4III	ACNGT	2 cut(s)	13, 616
HpyCH4IV	ACGT	2 cut(s)	71, 223
HpyCH4V	TGCA	4 cut(s)	97, 560, 575, 606
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 548, 557
HpyF3I	CTNAG	2 cut(s)	167, 248
HpySE526I	ACGT	2 cut(s)	71, 223
Hsp92II	CATG	1 cut(s)	107
HspAI	GCGC	1 cut(s)	425
Lsp1109I	GCAGC	1 cut(s)	560
MaeI	CTAG	3 cut(s)	23, 35, 351
MaeII	ACGT	2 cut(s)	71, 223
MaeIII	GTNAC	2 cut(s)	518, 616
MboII	GAAGA	5 cut(s)	22, 136, 394, 499, 502
MhlI	GDGCHC	2 cut(s)	99, 441
MluCI	AATT	2 cut(s)	324, 667
MlyI	GAGTC	3 cut(s)	119, 238, 392
MnlI	CCTC	5 cut(s)	129, 145, 444, 463, 525
MseI	TTAA	1 cut(s)	503
MslI	CAYNNNNRTG	1 cut(s)	102
MspCI	CTTAAG	1 cut(s)	502
MspI	CCGG	1 cut(s)	654
MspR9I	CCNGG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	231
MvnI	CGCG	1 cut(s)	425
MwoI	GCNNNNNNNGC	3 cut(s)	266, 548, 557
NlaIII	CATG	1 cut(s)	107
NmeAIII	GCCGAG	1 cut(s)	157
NmuCI	GTSAC	2 cut(s)	518, 616
NspI	RCATGY	1 cut(s)	107
PaeR7I	CTCGAG	1 cut(s)	440
PfeI	GAWTC	1 cut(s)	207
PkrI	GCNGC	1 cut(s)	550
PleI	GAGTC	3 cut(s)	118, 238, 391
PpsI	GAGTC	3 cut(s)	118, 238, 391
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspPI	GGNCC	2 cut(s)	651, 672
PspXI	VCTCGAGB	1 cut(s)	440
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
RseI	CAYNNNNRTG	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	503
SatI	GCNGC	1 cut(s)	549
Sau96I	GGNCC	2 cut(s)	651, 672
SchI	GAGTC	3 cut(s)	119, 238, 392
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	2 cut(s)	99, 441
Sfr274I	CTCGAG	1 cut(s)	440
SinI	GGWCC	1 cut(s)	651
SlaI	CTCGAG	1 cut(s)	440
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	2 cut(s)	440, 502
SmoI	CTYRAG	2 cut(s)	440, 502
Sse9I	AATT	2 cut(s)	324, 667
SsiI	CCGC	1 cut(s)	372
SspMI	CTAG	3 cut(s)	23, 35, 351
StyD4I	CCNGG	1 cut(s)	229
TaaI	ACNGT	2 cut(s)	13, 616
TaiI	ACGT	2 cut(s)	74, 226
TaqI	TCGA	3 cut(s)	108, 441, 588
TasI	AATT	2 cut(s)	324, 667
TfiI	GAWTC	1 cut(s)	207
Tru1I	TTAA	1 cut(s)	503
Tru9I	TTAA	1 cut(s)	503
TscAI	CASTG	5 cut(s)	104, 152, 208, 619, 637
TseFI	GTSAC	2 cut(s)	518, 616
TseI	GCWGC	1 cut(s)	548
Tsp45I	GTSAC	2 cut(s)	518, 616
TspDTI	ATGAA	3 cut(s)	17, 355, 394
TspRI	CASTG	5 cut(s)	104, 152, 208, 619, 637
Vha464I	CTTAAG	1 cut(s)	502
VneI	GTGCAC	1 cut(s)	95
VpaK11BI	GGWCC	1 cut(s)	651
XceI	RCATGY	1 cut(s)	107
XhoI	CTCGAG	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	15
XspI	CTAG	3 cut(s)	23, 35, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.