Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0013268

Physical Location & Seq

Genomic Coordinates Reverse (-)

48831350 .. 48832030

Gene Structure 681 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG357300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAATGACTCGGTAGACAAGCTAGTGATCTTCCTAGCAAAGAGAGATGGCATAGACAAGCTTGTCAAGACGTTCCAATATGTCTCCAAGCTTGTGCACTGGCATGCCGAGTCCACTAACCCGAAGATGGCCGAGAGATTCAAGCAGTGGGAGGTTTCGTCTGGCCTTAGCCGAAAGGCTTTTCGGACTGGCAGATTTCTCACCGGATTCAATGCAATGAGACGAAGCCCTGGATCAACGCCAACTCTTCGGTTCTTGGCTGTTCTTGCTAATGCTGGTGAGATGATATACTTCTTTTTCGACCATTTTCTTTGGTTGTCAAAAATTGGGACTTTGGACCCAAGTTTGGCTAGAAAGATGAGCTTCATTTCTGCATTTGGTGAGTCCTTTGGGTACATTTTCTTCATTATATCTGATTTTATCGCGCTAAAAGAAGGGCTTGAGGAAGAGAGGAAGGTTATGAGTTTGGAGGACAAGTCCTTTGAGAAGAAGAATGAGAGCATAAGAAAGATTAGAAGTGATAGAGTGATGAAGTTAATGGCTGTAGCAGCTAATGTTGCAGACTTGCTTATTGCAATTGCTGATATCGAGCCTAATCCATTCTGCAACCACACTGTGACTCTTGGGATTAGTGGATTGGTCTCTGCTTGGTCCGGTTGGTACAGAAATTGGCCCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0006996 GO:0007031 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016559 GO:0031090 GO:0031903 GO:0032535 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

PEX11

Protein Analysis

226

Amino Acids

25.77

Weight (kDa)

9.52

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEX11	PF05648	5 - 224	5.4e-58	Peroxisomal biogenesis factor 11 (PEX11)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47430
fragaria_vesca	FvH4_7g27470
malus_domestica	MD01G1182600.v1.1 MD07G1253300.v1.1
prunus_persica	Prupe.2G276800_v2.0.a1
pyrus_communis	pycom01g19280
rosa_chinensis	RchiOBHm_Chr1g0374261
rosa_laevigata	RLG00000026748
rosa_multiflora	Rmu_co8391081.1_g000001 Rmu_sc0039395.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283610
rosa_rugosa	Rorug01G0382400
rosa_samantha	Rh1AG393100 Rh1BG357300 Rh1CG370300 Rh1DG387700
rosa_wichuraiana	Rw1G034060 Rw1G034280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	62
AccI	GTMKAC	1 cut(s)	15
AccII	CGCG	1 cut(s)	425
AclWI	GGATC	1 cut(s)	241
AcoI	YGGCCR	1 cut(s)	129
AdeI	CACNNNGTG	1 cut(s)	616
AfaI	GTAC	2 cut(s)	395, 662
AfiI	CCNNNNNNNGG	2 cut(s)	127, 346
AgsI	TTSAA	2 cut(s)	142, 211
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	5 cut(s)	22, 61, 91, 363, 551
AluI	AGCT	5 cut(s)	22, 61, 91, 363, 551
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	3 cut(s)	88, 214, 646
Alw44I	GTGCAC	1 cut(s)	95
AlwI	GGATC	1 cut(s)	241
AoxI	GGCC	3 cut(s)	129, 163, 671
ApaLI	GTGCAC	1 cut(s)	95
ApeKI	GCWGC	1 cut(s)	548
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
AspLEI	GCGC	1 cut(s)	427
AspS9I	GGNCC	3 cut(s)	337, 651, 672
AsuHPI	GGTGA	3 cut(s)	193, 290, 392
AvaII	GGWCC	2 cut(s)	337, 651
BaeGI	GKGCMC	1 cut(s)	99
BarI	GAAGNNNNNNTAC	2 cut(s)	386, 418
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	560
BccI	CCATC	2 cut(s)	41, 121
BciT130I	CCWGG	1 cut(s)	231
BcoDI	GTCTC	3 cut(s)	88, 214, 646
BfaI	CTAG	3 cut(s)	23, 35, 351
BfmI	CTRYAG	1 cut(s)	543
BisI	GCNGC	1 cut(s)	549
BlsI	GCNGC	1 cut(s)	550
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	2 cut(s)	337, 651
BmgT120I	GGNCC	3 cut(s)	337, 651, 672
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	1 cut(s)	231
Bpu10I	CCTNAGC	1 cut(s)	167
BpuEI	CTTGAG	1 cut(s)	461
BsaI	GGTCTC	1 cut(s)	646
BsaJI	CCNNGG	1 cut(s)	229
BsaWI	WCCGGW	2 cut(s)	203, 653
BsaXI	ACNNNNNCTCC	4 cut(s)	143, 173, 461, 491
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 346
Bse1I	ACTGG	2 cut(s)	104, 193
Bse3DI	GCAATG	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	229
BseLI	CCNNNNNNNGG	2 cut(s)	127, 346
BseMI	GCAATG	1 cut(s)	222
BseNI	ACTGG	2 cut(s)	104, 193
BseSI	GKGCMC	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	560
Bsh1236I	CGCG	1 cut(s)	425
BshFI	GGCC	3 cut(s)	131, 165, 673
BsiHKAI	GWGCWC	1 cut(s)	99
BsiSI	CCGG	2 cut(s)	204, 654
BslFI	GGGAC	1 cut(s)	343
BslI	CCNNNNNNNGG	2 cut(s)	127, 346
BsmAI	GTCTC	3 cut(s)	88, 214, 646
BsmBI	CGTCTC	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	343
BsnI	GGCC	3 cut(s)	131, 165, 673
Bso31I	GGTCTC	1 cut(s)	646
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	2 cut(s)	27, 233
BspANI	GGCC	3 cut(s)	131, 165, 673
BspFNI	CGCG	1 cut(s)	425
BspLI	GGNNCC	1 cut(s)	339
BspPI	GGATC	1 cut(s)	241
BspTNI	GGTCTC	1 cut(s)	646
BsrDI	GCAATG	1 cut(s)	222
BsrI	ACTGG	2 cut(s)	104, 193
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	2 cut(s)	27, 233
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	1 cut(s)	616
Bst6I	CTCTTC	2 cut(s)	252, 441
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	167
BstFNI	CGCG	1 cut(s)	425
BstHHI	GCGC	1 cut(s)	427
BstKTI	GATC	2 cut(s)	30, 236
BstMAI	GTCTC	3 cut(s)	88, 214, 646
BstMBI	GATC	2 cut(s)	27, 233
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 548, 557
BstNI	CCWGG	1 cut(s)	231
BstNSI	RCATGY	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	229
BstSFI	CTRYAG	1 cut(s)	543
BstSLI	GKGCMC	1 cut(s)	99
BstUI	CGCG	1 cut(s)	425
BstV1I	GCAGC	1 cut(s)	560
BsuRI	GGCC	3 cut(s)	131, 165, 673
BtsI	GCAGTG	1 cut(s)	152
BtsIMutI	CAGTG	3 cut(s)	97, 152, 612
Cac8I	GCNNGC	1 cut(s)	105
CfoI	GCGC	1 cut(s)	427
Cfr13I	GGNCC	3 cut(s)	337, 651, 672
Csp6I	GTAC	2 cut(s)	394, 661
CviAII	CATG	1 cut(s)	104
CviQI	GTAC	2 cut(s)	394, 661
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	2 cut(s)	29, 235
DpnII	GATC	2 cut(s)	27, 233
DraIII	CACNNNGTG	1 cut(s)	616
DrdI	GACNNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	62
EaeI	YGGCCR	1 cut(s)	129
Eam1104I	CTCTTC	2 cut(s)	252, 441
EarI	CTCTTC	2 cut(s)	252, 441
Eco31I	GGTCTC	1 cut(s)	646
Eco32I	GATATC	1 cut(s)	586
Eco47I	GGWCC	2 cut(s)	337, 651
EcoRII	CCWGG	1 cut(s)	229
EcoRV	GATATC	1 cut(s)	586
Esp3I	CGTCTC	1 cut(s)	214
FaeI	CATG	1 cut(s)	107
FaiI	YATR	8 cut(s)	53, 81, 105, 289, 410, 461, 503, 679
FalI	AAGNNNNNCTT	4 cut(s)	347, 379, 423, 455
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	1 cut(s)	103
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	1 cut(s)	549
Fsp4HI	GCNGC	1 cut(s)	549
FspBI	CTAG	3 cut(s)	23, 35, 351
GlaI	GCGC	1 cut(s)	426
GluI	GCNGC	1 cut(s)	549
HaeIII	GGCC	3 cut(s)	131, 165, 673
HapII	CCGG	2 cut(s)	204, 654
HhaI	GCGC	1 cut(s)	427
Hin1II	CATG	1 cut(s)	107
Hin6I	GCGC	1 cut(s)	425
HinP1I	GCGC	1 cut(s)	425
HindIII	AAGCTT	2 cut(s)	59, 89
HinfI	GANTC	6 cut(s)	8, 110, 138, 207, 383, 619
HpaII	CCGG	2 cut(s)	204, 654
HphI	GGTGA	3 cut(s)	193, 290, 392
Hpy166II	GTNNAC	3 cut(s)	16, 97, 114
Hpy188I	TCNGA	2 cut(s)	186, 415
Hpy188III	TCNNGA	1 cut(s)	67
Hpy8I	GTNNAC	3 cut(s)	16, 97, 114
HpyAV	CCTTC	2 cut(s)	428, 448
HpyCH4III	ACNGT	1 cut(s)	616
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	6 cut(s)	97, 215, 374, 560, 575, 606
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 548, 557
HpyF3I	CTNAG	1 cut(s)	167
HpySE526I	ACGT	1 cut(s)	71
Hsp92II	CATG	1 cut(s)	107
HspAI	GCGC	1 cut(s)	425
Kzo9I	GATC	2 cut(s)	27, 233
LpnPI	CCDG	8 cut(s)	85, 147, 174, 216, 217, 243, 261, 667
Lsp1109I	GCAGC	1 cut(s)	560
MaeI	CTAG	3 cut(s)	23, 35, 351
MaeII	ACGT	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	616
MalI	GATC	2 cut(s)	29, 235
MboI	GATC	2 cut(s)	27, 233
MboII	GAAGA	7 cut(s)	22, 136, 239, 394, 458, 499, 502
MfeI	CAATTG	1 cut(s)	576
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	3 cut(s)	324, 576, 667
MlyI	GAGTC	4 cut(s)	2, 119, 392, 613
MnlI	CCTC	4 cut(s)	145, 436, 444, 463
MseI	TTAA	1 cut(s)	536
MslI	CAYNNNNRTG	1 cut(s)	102
MspI	CCGG	2 cut(s)	204, 654
MspR9I	CCNGG	1 cut(s)	231
MunI	CAATTG	1 cut(s)	576
MvaI	CCWGG	1 cut(s)	231
MvnI	CGCG	1 cut(s)	425
MwoI	GCNNNNNNNGC	3 cut(s)	266, 548, 557
NdeII	GATC	2 cut(s)	27, 233
NlaIII	CATG	1 cut(s)	107
NlaIV	GGNNCC	1 cut(s)	339
NmeAIII	GCCGAG	2 cut(s)	133, 157
NmuCI	GTSAC	1 cut(s)	616
NspI	RCATGY	1 cut(s)	107
PaeI	GCATGC	1 cut(s)	107
PfeI	GAWTC	2 cut(s)	138, 207
PkrI	GCNGC	1 cut(s)	550
PleI	GAGTC	4 cut(s)	2, 118, 391, 613
PpsI	GAGTC	4 cut(s)	2, 118, 391, 613
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	339
PspPI	GGNCC	3 cut(s)	337, 651, 672
RsaI	GTAC	2 cut(s)	395, 662
RsaNI	GTAC	2 cut(s)	394, 661
RseI	CAYNNNNRTG	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	536
SatI	GCNGC	1 cut(s)	549
Sau3AI	GATC	2 cut(s)	27, 233
Sau96I	GGNCC	3 cut(s)	337, 651, 672
SchI	GAGTC	4 cut(s)	2, 119, 392, 613
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	8 cut(s)	24, 63, 74, 93, 156, 365, 459, 553
SfcI	CTRYAG	1 cut(s)	543
SinI	GGWCC	2 cut(s)	337, 651
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
SphI	GCATGC	1 cut(s)	107
Sse9I	AATT	3 cut(s)	324, 576, 667
SspMI	CTAG	3 cut(s)	23, 35, 351
StyD4I	CCNGG	1 cut(s)	229
TaaI	ACNGT	1 cut(s)	616
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	2 cut(s)	300, 588
TasI	AATT	3 cut(s)	324, 576, 667
TfiI	GAWTC	2 cut(s)	138, 207
Tru1I	TTAA	1 cut(s)	536
Tru9I	TTAA	1 cut(s)	536
TscAI	CASTG	3 cut(s)	104, 152, 619
TseFI	GTSAC	1 cut(s)	616
TseI	GCWGC	1 cut(s)	548
Tsp45I	GTSAC	1 cut(s)	616
TspDTI	ATGAA	4 cut(s)	17, 355, 394, 545
TspRI	CASTG	3 cut(s)	104, 152, 619
VneI	GTGCAC	1 cut(s)	95
VpaK11BI	GGWCC	2 cut(s)	337, 651
XceI	RCATGY	1 cut(s)	107
XmiI	GTMKAC	1 cut(s)	15
XspI	CTAG	3 cut(s)	23, 35, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.