pycom01g19280

Peroxisomal membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0013268
Physical Location & Seq
Reverse (-)
18005634 .. 18006230
597 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g19280.1

Sequence Viewer

Length: 597 bp
ATGAACGACACAGTAGACAAACTTGTTATCTTCCTGGCAAAGCGAGACGGCATTGACAAGCTTGTCAAAACCTTCCAATACGTCTCCAAGATTGCGCACTGGCACGCCGAGGCCAAGAACCCCGAAGTTGCGCAGCGAGCCAAGCAGTGGGAAGTTGCATCCGGGCTTAGCCGGAAGGCCTTTCGAACGGGGCGGTTTCTCACGGGATTCAATGCGCTGAGAAGAAGCCCCGGCTCCACCCCTACGCTTCGGTTCCTAGCCGTTCTTGCTAATGCAGGGGAGATGGTCTACTTCTTTTTCGACCATTTTCTCTGGCTGTCCAGAATCGGGACTCTGAACCCGAACCTGGCGCAAAAGATGAGCTTTATATCGGCGTTTGGTGAGTCGTTTGGGTATGTTTTCTTCATCGTTTTGGATTTCATTGCGTTGAAAGAGGGCGCGGAGGCGGAGAAAAAGGTTGCTGCCTTGGAGGACAAGTCTGCGGAGACGAAGAGCGAGAGTTTGAGAAAGATTAGGGCTGATAGAGTGATGAGATTAATGGCAGTGGCGGCTAATGTTGCGGATTTGATCGATCGGAATCGCGGATATCGAGCCTAA

Protein Analysis

199

Amino Acids

22.34

Weight (kDa)

9.94

Isoelectric Point (pI)

23.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PEX11 PF05648 5 - 190 9.9e-48 Peroxisomal biogenesis factor 11 (PEX11)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013268)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47430
fragaria_vesca FvH4_7g27470
malus_domestica MD01G1182600.v1.1 MD07G1253300.v1.1
prunus_persica Prupe.2G276800_v2.0.a1
pyrus_communis pycom01g19280
rosa_chinensis RchiOBHm_Chr1g0374261
rosa_laevigata RLG00000026748
rosa_multiflora Rmu_co8391081.1_g000001 Rmu_sc0039395.1_g000001
rosa_roxburghii Rroxscaffold_4G00283610
rosa_rugosa Rorug01G0382400
rosa_samantha Rh1AG393100 Rh1BG357300 Rh1CG370300 Rh1DG387700
rosa_wichuraiana Rw1G034060 Rw1G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 62
Acc16I TGCGCA 2 cut(s) 96, 132
AccB7I CCANNNNNTGG 1 cut(s) 147
AccI GTMKAC 2 cut(s) 15, 288
AccII CGCG 2 cut(s) 440, 582
AciI CCGC 7 cut(s) 193, 440, 446, 482, 548, 560, 582
AfiI CCNNNNNNNGG 3 cut(s) 147, 327, 346
AgsI TTSAA 2 cut(s) 211, 430
AjnI CCWGG 2 cut(s) 33, 345
AluBI AGCT 2 cut(s) 61, 363
AluI AGCT 2 cut(s) 61, 363
Alw26I GTCTC 3 cut(s) 39, 88, 479
AoxI GGCC 2 cut(s) 111, 177
ApeKI GCWGC 2 cut(s) 133, 461
AseI ATTAAT 1 cut(s) 536
AspLEI GCGC 5 cut(s) 97, 133, 217, 352, 440
AsuC2I CCSGG 2 cut(s) 163, 231
AsuHPI GGTGA 1 cut(s) 392
AsuII TTCGAA 1 cut(s) 184
BarI GAAGNNNNNNTAC 2 cut(s) 386, 418
BbvI GCAGC 2 cut(s) 145, 448
BccI CCATC 1 cut(s) 277
BceAI ACGGC 2 cut(s) 64, 245
BciT130I CCWGG 2 cut(s) 35, 347
BcnI CCSGG 2 cut(s) 163, 231
BcoDI GTCTC 3 cut(s) 39, 88, 479
BfaI CTAG 1 cut(s) 257
BisI GCNGC 3 cut(s) 134, 462, 549
BlpI GCTNAGC 1 cut(s) 167
BlsI GCNGC 3 cut(s) 135, 463, 550
Bme1390I CCNGG 4 cut(s) 35, 163, 231, 347
BmiI GGNNCC 2 cut(s) 235, 254
BmrFI CCNGG 4 cut(s) 35, 163, 231, 347
BmsI GCATC 1 cut(s) 167
Bpu1102I GCTNAGC 1 cut(s) 167
Bpu14I TTCGAA 1 cut(s) 184
BpuMI CCSGG 2 cut(s) 163, 231
Bsa29I ATCGAT 1 cut(s) 570
BsaBI GATNNNNATC 1 cut(s) 576
BsaJI CCNNGG 3 cut(s) 108, 229, 465
BsaXI ACNNNNNCTCC 2 cut(s) 461, 491
Bsc4I CCNNNNNNNGG 3 cut(s) 147, 327, 346
Bse1I ACTGG 1 cut(s) 104
Bse3DI GCAATG 1 cut(s) 420
Bse8I GATNNNNATC 1 cut(s) 576
BseBI CCWGG 2 cut(s) 35, 347
BseCI ATCGAT 1 cut(s) 570
BseDI CCNNGG 3 cut(s) 108, 229, 465
BseGI GGATG 1 cut(s) 158
BseJI GATNNNNATC 1 cut(s) 576
BseLI CCNNNNNNNGG 3 cut(s) 147, 327, 346
BseMI GCAATG 1 cut(s) 420
BseMII CTCAG 1 cut(s) 209
BseNI ACTGG 1 cut(s) 104
BseXI GCAGC 2 cut(s) 145, 448
Bsh1236I CGCG 2 cut(s) 440, 582
Bsh1285I CGRYCG 1 cut(s) 574
BshFI GGCC 2 cut(s) 113, 179
BshVI ATCGAT 1 cut(s) 570
BsiEI CGRYCG 1 cut(s) 574
BsiSI CCGG 3 cut(s) 162, 172, 231
BslFI GGGAC 1 cut(s) 343
BslI CCNNNNNNNGG 3 cut(s) 147, 327, 346
BsmAI GTCTC 3 cut(s) 39, 88, 479
BsmBI CGTCTC 3 cut(s) 39, 88, 479
BsmFI GGGAC 1 cut(s) 343
BsnI GGCC 2 cut(s) 113, 179
Bsp119I TTCGAA 1 cut(s) 184
Bsp143I GATC 2 cut(s) 567, 571
Bsp1720I GCTNAGC 1 cut(s) 167
BspACI CCGC 7 cut(s) 193, 440, 446, 482, 548, 560, 582
BspANI GGCC 2 cut(s) 113, 179
BspCNI CTCAG 1 cut(s) 210
BspDI ATCGAT 1 cut(s) 570
BspFNI CGCG 2 cut(s) 440, 582
BspLI GGNNCC 2 cut(s) 235, 254
BspQI GCTCTTC 1 cut(s) 485
BspT104I TTCGAA 1 cut(s) 184
BsrDI GCAATG 1 cut(s) 420
BsrI ACTGG 1 cut(s) 104
BssECI CCNNGG 3 cut(s) 108, 229, 465
BssMI GATC 2 cut(s) 567, 571
BssT1I CCWWGG 1 cut(s) 465
Bst2UI CCWGG 2 cut(s) 35, 347
Bst4CI ACNGT 1 cut(s) 13
Bst6I CTCTTC 1 cut(s) 485
BstBI TTCGAA 1 cut(s) 184
BstC8I GCNNGC 2 cut(s) 105, 138
BstDEI CTNAG 2 cut(s) 167, 218
BstF5I GGATG 1 cut(s) 158
BstFNI CGCG 2 cut(s) 440, 582
BstHHI GCGC 5 cut(s) 97, 133, 217, 352, 440
BstKTI GATC 2 cut(s) 570, 574
BstMAI GTCTC 3 cut(s) 39, 88, 479
BstMBI GATC 2 cut(s) 567, 571
BstMCI CGRYCG 1 cut(s) 574
BstMWI GCNNNNNNNGC 5 cut(s) 137, 142, 266, 548, 557
BstNI CCWGG 2 cut(s) 35, 347
BstSCI CCNGG 4 cut(s) 33, 161, 229, 345
BstUI CGCG 2 cut(s) 440, 582
BstV1I GCAGC 2 cut(s) 145, 448
Bsu15I ATCGAT 1 cut(s) 570
BsuRI GGCC 2 cut(s) 113, 179
BsuTUI ATCGAT 1 cut(s) 570
BtsCI GGATG 1 cut(s) 158
BtsI GCAGTG 2 cut(s) 152, 549
BtsIMutI CAGTG 3 cut(s) 97, 152, 549
Cac8I GCNNGC 2 cut(s) 105, 138
CfoI GCGC 5 cut(s) 97, 133, 217, 352, 440
ClaI ATCGAT 1 cut(s) 570
DdeI CTNAG 2 cut(s) 167, 218
DpnI GATC 2 cut(s) 569, 573
DpnII GATC 2 cut(s) 567, 571
DrdI GACNNNNNNGTC 1 cut(s) 62
DseDI GACNNNNNNGTC 1 cut(s) 62
Eam1104I CTCTTC 1 cut(s) 485
EarI CTCTTC 1 cut(s) 485
EciI GGCGGA 1 cut(s) 461
Eco130I CCWWGG 1 cut(s) 465
Eco147I AGGCCT 1 cut(s) 179
Eco32I GATATC 1 cut(s) 587
EcoRII CCWGG 2 cut(s) 33, 345
EcoRV GATATC 1 cut(s) 587
EcoT14I CCWWGG 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 465
Esp3I CGTCTC 3 cut(s) 39, 88, 479
FaiI YATR 2 cut(s) 368, 396
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FaqI GGGAC 1 cut(s) 343
FblI GTMKAC 2 cut(s) 15, 288
Fnu4HI GCNGC 3 cut(s) 134, 462, 549
FokI GGATG 1 cut(s) 145
Fsp4HI GCNGC 3 cut(s) 134, 462, 549
FspBI CTAG 1 cut(s) 257
FspI TGCGCA 2 cut(s) 96, 132
GlaI GCGC 5 cut(s) 96, 132, 216, 351, 439
GluI GCNGC 3 cut(s) 134, 462, 549
HaeIII GGCC 2 cut(s) 113, 179
HapII CCGG 3 cut(s) 162, 172, 231
HhaI GCGC 5 cut(s) 97, 133, 217, 352, 440
Hin6I GCGC 5 cut(s) 95, 131, 215, 350, 438
HinP1I GCGC 5 cut(s) 95, 131, 215, 350, 438
HindIII AAGCTT 1 cut(s) 59
HinfI GANTC 5 cut(s) 207, 324, 331, 383, 577
HpaII CCGG 3 cut(s) 162, 172, 231
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 2 cut(s) 16, 289
Hpy188I TCNGA 2 cut(s) 336, 576
Hpy188III TCNNGA 2 cut(s) 321, 328
Hpy8I GTNNAC 2 cut(s) 16, 289
HpyAV CCTTC 2 cut(s) 82, 169
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 2 cut(s) 158, 275
HpyF10VI GCNNNNNNNGC 5 cut(s) 137, 142, 266, 548, 557
HpyF3I CTNAG 2 cut(s) 167, 218
HpySE526I ACGT 1 cut(s) 81
HspAI GCGC 5 cut(s) 95, 131, 215, 350, 438
Kzo9I GATC 2 cut(s) 567, 571
LguI GCTCTTC 1 cut(s) 485
LmnI GCTCC 1 cut(s) 239
Lsp1109I GCAGC 2 cut(s) 145, 448
LweI GCATC 1 cut(s) 167
MaeI CTAG 1 cut(s) 257
MaeII ACGT 1 cut(s) 81
MalI GATC 2 cut(s) 569, 573
MboI GATC 2 cut(s) 567, 571
MboII GAAGA 4 cut(s) 22, 234, 394, 502
MlyI GAGTC 2 cut(s) 325, 392
MnlI CCTC 4 cut(s) 103, 427, 436, 463
MseI TTAA 1 cut(s) 536
MspI CCGG 3 cut(s) 162, 172, 231
MspR9I CCNGG 4 cut(s) 35, 163, 231, 347
MvaI CCWGG 2 cut(s) 35, 347
MvnI CGCG 2 cut(s) 440, 582
MwoI GCNNNNNNNGC 5 cut(s) 137, 142, 266, 548, 557
NciI CCSGG 2 cut(s) 163, 231
NdeII GATC 2 cut(s) 567, 571
NlaIV GGNNCC 2 cut(s) 235, 254
NmeAIII GCCGAG 1 cut(s) 133
NsbI TGCGCA 2 cut(s) 96, 132
NspV TTCGAA 1 cut(s) 184
PceI AGGCCT 1 cut(s) 179
PciSI GCTCTTC 1 cut(s) 485
PcsI WCGNNNNNNNCGW 1 cut(s) 586
PfeI GAWTC 3 cut(s) 207, 324, 577
PflMI CCANNNNNTGG 1 cut(s) 147
PkrI GCNGC 3 cut(s) 135, 463, 550
Ple19I CGATCG 1 cut(s) 574
PleI GAGTC 2 cut(s) 325, 391
PpsI GAGTC 2 cut(s) 325, 391
PshBI ATTAAT 1 cut(s) 536
Psp6I CCWGG 2 cut(s) 33, 345
PspGI CCWGG 2 cut(s) 33, 345
PspN4I GGNNCC 2 cut(s) 235, 254
PvuI CGATCG 1 cut(s) 574
SapI GCTCTTC 1 cut(s) 485
SaqAI TTAA 1 cut(s) 536
SatI GCNGC 3 cut(s) 134, 462, 549
Sau3AI GATC 2 cut(s) 567, 571
SchI GAGTC 2 cut(s) 325, 392
ScrFI CCNGG 4 cut(s) 35, 163, 231, 347
SetI ASST 6 cut(s) 63, 74, 84, 348, 365, 459
SfaNI GCATC 1 cut(s) 167
SfuI TTCGAA 1 cut(s) 184
SseBI AGGCCT 1 cut(s) 179
SsiI CCGC 7 cut(s) 193, 440, 446, 482, 548, 560, 582
SspMI CTAG 1 cut(s) 257
StuI AGGCCT 1 cut(s) 179
StyD4I CCNGG 4 cut(s) 33, 161, 229, 345
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 1 cut(s) 13
TaiI ACGT 1 cut(s) 84
TaqI TCGA 4 cut(s) 184, 300, 570, 589
TauI GCSGC 1 cut(s) 551
TfiI GAWTC 3 cut(s) 207, 324, 577
Tru1I TTAA 1 cut(s) 536
Tru9I TTAA 1 cut(s) 536
TscAI CASTG 3 cut(s) 104, 152, 549
TseI GCWGC 2 cut(s) 133, 461
TspDTI ATGAA 3 cut(s) 17, 394, 409
TspRI CASTG 3 cut(s) 104, 152, 549
Van91I CCANNNNNTGG 1 cut(s) 147
VspI ATTAAT 1 cut(s) 536
XmiI GTMKAC 2 cut(s) 15, 288
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.