Rw1G034280

Peroxisomal membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0013268
Physical Location & Seq
Forward (+)
62218971 .. 62219651
681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G034280.1

Sequence Viewer

Length: 681 bp
ATGAATGACTCGGTAGACAAGCTAGTGATCTTCCTAGCAAAGAGAGATGGCATAGACAAGCTTGTCAAGACGTTCCAATATGTCTCCAAGCTTGTGCACTGGCATGCCGAGTCCACTAACCCGAAGATGGCAGAGAGATTCAAGCAGTGGGAGGTTTCGTCTGGCCTTAGCCGAAAGGCTTTTCGGACTGGCAGGTTCCTCACCGGATTCAATGCAATGAGACGAAGCCCTGGATCAACGCCAACTCTTCGGTTCTTGGCTGTTCTTGCTAATGCTGGTGAGATGATATACTTCTTTTTTGACCATTTTCTTTGGTTGTCAAAAATTGGGACTTTGGACCCAAGTTTGGCTAGAAAGATGAGCTTCATTTCCGCATTTGGTGAGTCCTTTGGGTACATTTTCTTCATTATATCTGATTTTATCGCGCTAAAAGAAGGGCTTGAGGAAGAGAGGAAGGTTATGAGTTTGGAGGACAAGTCCATTGAGAAGAAGAATGAGAGCATAAGAAAGATTAGAAGTGATAGAGTGATGAGGTTAATGGCTGTAGCAGCTAATGTTGCAGACTTGCTTATTGCAATTGCTGATATCGAGCCTAATCCATTCTGCAACCACACTGTGACTCTTGGGATCAGTGGATTGGTCTCTGCTTGGTCCGGTTGGTACAGAAATTGGCCCACATAA

Protein Analysis

226

Amino Acids

25.78

Weight (kDa)

9.54

Isoelectric Point (pI)

35.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PEX11 PF05648 5 - 224 2.7e-58 Peroxisomal biogenesis factor 11 (PEX11)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013268)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47430
fragaria_vesca FvH4_7g27470
malus_domestica MD01G1182600.v1.1 MD07G1253300.v1.1
prunus_persica Prupe.2G276800_v2.0.a1
pyrus_communis pycom01g19280
rosa_chinensis RchiOBHm_Chr1g0374261
rosa_laevigata RLG00000026748
rosa_multiflora Rmu_co8391081.1_g000001 Rmu_sc0039395.1_g000001
rosa_roxburghii Rroxscaffold_4G00283610
rosa_rugosa Rorug01G0382400
rosa_samantha Rh1AG393100 Rh1BG357300 Rh1CG370300 Rh1DG387700
rosa_wichuraiana Rw1G034060 Rw1G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 62
Acc36I ACCTGC 1 cut(s) 183
AccI GTMKAC 1 cut(s) 15
AccII CGCG 1 cut(s) 425
AciI CCGC 1 cut(s) 372
AclWI GGATC 2 cut(s) 241, 635
AdeI CACNNNGTG 1 cut(s) 616
AfaI GTAC 2 cut(s) 395, 662
AfiI CCNNNNNNNGG 2 cut(s) 127, 346
AgsI TTSAA 2 cut(s) 142, 211
AjnI CCWGG 1 cut(s) 229
AluBI AGCT 5 cut(s) 22, 61, 91, 363, 551
AluI AGCT 5 cut(s) 22, 61, 91, 363, 551
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 3 cut(s) 88, 214, 646
Alw44I GTGCAC 1 cut(s) 95
AlwI GGATC 2 cut(s) 241, 635
AoxI GGCC 2 cut(s) 163, 671
ApaLI GTGCAC 1 cut(s) 95
ApeKI GCWGC 1 cut(s) 548
AspLEI GCGC 1 cut(s) 427
AspS9I GGNCC 3 cut(s) 337, 651, 672
AsuHPI GGTGA 3 cut(s) 193, 290, 392
AvaII GGWCC 2 cut(s) 337, 651
BaeGI GKGCMC 1 cut(s) 99
BarI GAAGNNNNNNTAC 2 cut(s) 386, 418
Bbv12I GWGCWC 1 cut(s) 99
BbvI GCAGC 1 cut(s) 560
BccI CCATC 2 cut(s) 41, 121
BciT130I CCWGG 1 cut(s) 231
BcoDI GTCTC 3 cut(s) 88, 214, 646
BfaI CTAG 3 cut(s) 23, 35, 351
BfmI CTRYAG 1 cut(s) 543
BfuAI ACCTGC 1 cut(s) 183
BisI GCNGC 1 cut(s) 549
BlsI GCNGC 1 cut(s) 550
Bme1390I CCNGG 1 cut(s) 231
Bme18I GGWCC 2 cut(s) 337, 651
BmgT120I GGNCC 3 cut(s) 337, 651, 672
BmiI GGNNCC 2 cut(s) 197, 339
BmrFI CCNGG 1 cut(s) 231
Bpu10I CCTNAGC 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 461
BsaI GGTCTC 1 cut(s) 646
BsaJI CCNNGG 1 cut(s) 229
BsaWI WCCGGW 2 cut(s) 203, 653
BsaXI ACNNNNNCTCC 4 cut(s) 143, 173, 461, 491
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 346
Bse1I ACTGG 2 cut(s) 104, 193
Bse3DI GCAATG 1 cut(s) 222
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 229
BseLI CCNNNNNNNGG 2 cut(s) 127, 346
BseMI GCAATG 1 cut(s) 222
BseNI ACTGG 2 cut(s) 104, 193
BseSI GKGCMC 1 cut(s) 99
BseXI GCAGC 1 cut(s) 560
Bsh1236I CGCG 1 cut(s) 425
BshFI GGCC 2 cut(s) 165, 673
BsiHKAI GWGCWC 1 cut(s) 99
BsiSI CCGG 2 cut(s) 204, 654
BslFI GGGAC 1 cut(s) 343
BslI CCNNNNNNNGG 2 cut(s) 127, 346
BsmAI GTCTC 3 cut(s) 88, 214, 646
BsmBI CGTCTC 1 cut(s) 214
BsmFI GGGAC 1 cut(s) 343
BsnI GGCC 2 cut(s) 165, 673
Bso31I GGTCTC 1 cut(s) 646
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 3 cut(s) 27, 233, 627
BspACI CCGC 1 cut(s) 372
BspANI GGCC 2 cut(s) 165, 673
BspFNI CGCG 1 cut(s) 425
BspLI GGNNCC 2 cut(s) 197, 339
BspMI ACCTGC 1 cut(s) 183
BspPI GGATC 2 cut(s) 241, 635
BspTNI GGTCTC 1 cut(s) 646
BsrDI GCAATG 1 cut(s) 222
BsrI ACTGG 2 cut(s) 104, 193
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 3 cut(s) 27, 233, 627
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 616
Bst6I CTCTTC 2 cut(s) 252, 441
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 1 cut(s) 167
BstFNI CGCG 1 cut(s) 425
BstHHI GCGC 1 cut(s) 427
BstKTI GATC 3 cut(s) 30, 236, 630
BstMAI GTCTC 3 cut(s) 88, 214, 646
BstMBI GATC 3 cut(s) 27, 233, 627
BstMWI GCNNNNNNNGC 3 cut(s) 266, 548, 557
BstNI CCWGG 1 cut(s) 231
BstNSI RCATGY 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 229
BstSFI CTRYAG 1 cut(s) 543
BstSLI GKGCMC 1 cut(s) 99
BstUI CGCG 1 cut(s) 425
BstV1I GCAGC 1 cut(s) 560
BsuRI GGCC 2 cut(s) 165, 673
BtsI GCAGTG 1 cut(s) 152
BtsIMutI CAGTG 4 cut(s) 97, 152, 612, 637
BveI ACCTGC 1 cut(s) 183
Cac8I GCNNGC 1 cut(s) 105
CfoI GCGC 1 cut(s) 427
Cfr13I GGNCC 3 cut(s) 337, 651, 672
Csp6I GTAC 2 cut(s) 394, 661
CviAII CATG 1 cut(s) 104
CviQI GTAC 2 cut(s) 394, 661
DdeI CTNAG 1 cut(s) 167
DpnI GATC 3 cut(s) 29, 235, 629
DpnII GATC 3 cut(s) 27, 233, 627
DraIII CACNNNGTG 1 cut(s) 616
DrdI GACNNNNNNGTC 1 cut(s) 62
DseDI GACNNNNNNGTC 1 cut(s) 62
Eam1104I CTCTTC 2 cut(s) 252, 441
EarI CTCTTC 2 cut(s) 252, 441
Eco31I GGTCTC 1 cut(s) 646
Eco32I GATATC 1 cut(s) 586
Eco47I GGWCC 2 cut(s) 337, 651
EcoRII CCWGG 1 cut(s) 229
EcoRV GATATC 1 cut(s) 586
Esp3I CGTCTC 1 cut(s) 214
FaeI CATG 1 cut(s) 107
FaiI YATR 8 cut(s) 53, 81, 105, 289, 410, 461, 503, 679
FalI AAGNNNNNCTT 4 cut(s) 347, 379, 423, 455
FaqI GGGAC 1 cut(s) 343
FatI CATG 1 cut(s) 103
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 1 cut(s) 549
Fsp4HI GCNGC 1 cut(s) 549
FspBI CTAG 3 cut(s) 23, 35, 351
GlaI GCGC 1 cut(s) 426
GluI GCNGC 1 cut(s) 549
HaeIII GGCC 2 cut(s) 165, 673
HapII CCGG 2 cut(s) 204, 654
HhaI GCGC 1 cut(s) 427
Hin1II CATG 1 cut(s) 107
Hin6I GCGC 1 cut(s) 425
HinP1I GCGC 1 cut(s) 425
HindIII AAGCTT 2 cut(s) 59, 89
HinfI GANTC 6 cut(s) 8, 110, 138, 207, 383, 619
HpaII CCGG 2 cut(s) 204, 654
HphI GGTGA 3 cut(s) 193, 290, 392
Hpy166II GTNNAC 3 cut(s) 16, 97, 114
Hpy188I TCNGA 2 cut(s) 186, 415
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 3 cut(s) 16, 97, 114
HpyAV CCTTC 2 cut(s) 428, 448
HpyCH4III ACNGT 1 cut(s) 616
HpyCH4IV ACGT 1 cut(s) 71
HpyCH4V TGCA 5 cut(s) 97, 215, 560, 575, 606
HpyF10VI GCNNNNNNNGC 3 cut(s) 266, 548, 557
HpyF3I CTNAG 1 cut(s) 167
HpySE526I ACGT 1 cut(s) 71
Hsp92II CATG 1 cut(s) 107
HspAI GCGC 1 cut(s) 425
Kzo9I GATC 3 cut(s) 27, 233, 627
LpnPI CCDG 9 cut(s) 85, 147, 174, 178, 216, 217, 243, 261, 667
Lsp1109I GCAGC 1 cut(s) 560
MaeI CTAG 3 cut(s) 23, 35, 351
MaeII ACGT 1 cut(s) 71
MaeIII GTNAC 1 cut(s) 616
MalI GATC 3 cut(s) 29, 235, 629
MboI GATC 3 cut(s) 27, 233, 627
MboII GAAGA 7 cut(s) 22, 136, 239, 394, 458, 499, 502
MfeI CAATTG 1 cut(s) 576
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 3 cut(s) 324, 576, 667
MlyI GAGTC 4 cut(s) 2, 119, 392, 613
MnlI CCTC 6 cut(s) 145, 209, 436, 444, 463, 525
MseI TTAA 1 cut(s) 536
MslI CAYNNNNRTG 1 cut(s) 102
MspI CCGG 2 cut(s) 204, 654
MspR9I CCNGG 1 cut(s) 231
MunI CAATTG 1 cut(s) 576
MvaI CCWGG 1 cut(s) 231
MvnI CGCG 1 cut(s) 425
MwoI GCNNNNNNNGC 3 cut(s) 266, 548, 557
NdeII GATC 3 cut(s) 27, 233, 627
NlaIII CATG 1 cut(s) 107
NlaIV GGNNCC 2 cut(s) 197, 339
NmeAIII GCCGAG 1 cut(s) 133
NmuCI GTSAC 1 cut(s) 616
NspI RCATGY 1 cut(s) 107
PaeI GCATGC 1 cut(s) 107
PfeI GAWTC 2 cut(s) 138, 207
PkrI GCNGC 1 cut(s) 550
PleI GAGTC 4 cut(s) 2, 118, 391, 613
PpsI GAGTC 4 cut(s) 2, 118, 391, 613
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 2 cut(s) 197, 339
PspPI GGNCC 3 cut(s) 337, 651, 672
RsaI GTAC 2 cut(s) 395, 662
RsaNI GTAC 2 cut(s) 394, 661
RseI CAYNNNNRTG 1 cut(s) 102
SaqAI TTAA 1 cut(s) 536
SatI GCNGC 1 cut(s) 549
Sau3AI GATC 3 cut(s) 27, 233, 627
Sau96I GGNCC 3 cut(s) 337, 651, 672
SchI GAGTC 4 cut(s) 2, 119, 392, 613
ScrFI CCNGG 1 cut(s) 231
SduI GDGCHC 1 cut(s) 99
SfcI CTRYAG 1 cut(s) 543
SinI GGWCC 2 cut(s) 337, 651
SmiMI CAYNNNNRTG 1 cut(s) 102
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
SphI GCATGC 1 cut(s) 107
Sse9I AATT 3 cut(s) 324, 576, 667
SsiI CCGC 1 cut(s) 372
SspMI CTAG 3 cut(s) 23, 35, 351
StyD4I CCNGG 1 cut(s) 229
TaaI ACNGT 1 cut(s) 616
TaiI ACGT 1 cut(s) 74
TaqI TCGA 1 cut(s) 588
TasI AATT 3 cut(s) 324, 576, 667
TfiI GAWTC 2 cut(s) 138, 207
Tru1I TTAA 1 cut(s) 536
Tru9I TTAA 1 cut(s) 536
TscAI CASTG 4 cut(s) 104, 152, 619, 637
TseFI GTSAC 1 cut(s) 616
TseI GCWGC 1 cut(s) 548
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 3 cut(s) 17, 355, 394
TspRI CASTG 4 cut(s) 104, 152, 619, 637
VneI GTGCAC 1 cut(s) 95
VpaK11BI GGWCC 2 cut(s) 337, 651
XceI RCATGY 1 cut(s) 107
XmiI GTMKAC 1 cut(s) 15
XspI CTAG 3 cut(s) 23, 35, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.