Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0013268

Physical Location & Seq

Genomic Coordinates Reverse (-)

32076671 .. 32077210

Gene Structure 540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1253300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGAACGACACAGTTGACAAACTTGTTATCTTCCTGGCAAAGAGAGACGGCATTGACAAGCTTGTCAAAACCTTCCAATACATCTCCAAGATTGCGCACTGGCACGCCGAGGCCAAAAACCCCGAAACCGCACAGCGAGCCAAGCAGTGGGAAGTTGCATCCGGGCTTAGCCGGAAGGCCTTTCGAACGGGCCGGTTTCTCACAGGATTCAATGCGTTGAGAAGAAGCCCTGGATCAACCCCTACGATTCGGTTCCTAGCTGTTCTTGCTAATGCAGGGGAGATGGTCTACTTCTTTTTCGACCATTTTCTCTGGCTGTCCAGAATTGGGACTCTGAGCCCGAATCTGGCGCAAAAGATGAGCTTTATATCGGCGTTTGGTGAGTCGTTCGGGTACGTGTTCTTCATCGTTTTGGATTTCATTGCGCTGAAAGAGGGTGTGGAGGCGGAGAAGAAGGTTGCTGCCTTGGAAGACAAGTCTGCGGAGATGAAGAGCGAGAGTTTGAGGAAGATTAGGGGTGACAGAGTGATGAGAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0006996 GO:0007031 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016559 GO:0031090 GO:0031903 GO:0032535 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

PEX11

Protein Analysis

180

Amino Acids

20.32

Weight (kDa)

9.8

Isoelectric Point (pI)

28.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEX11	PF05648	5 - 175	4.6e-43	Peroxisomal biogenesis factor 11 (PEX11)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47430
fragaria_vesca	FvH4_7g27470
malus_domestica	MD01G1182600.v1.1 MD07G1253300.v1.1
prunus_persica	Prupe.2G276800_v2.0.a1
pyrus_communis	pycom01g19280
rosa_chinensis	RchiOBHm_Chr1g0374261
rosa_laevigata	RLG00000026748
rosa_multiflora	Rmu_co8391081.1_g000001 Rmu_sc0039395.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283610
rosa_rugosa	Rorug01G0382400
rosa_samantha	Rh1AG393100 Rh1BG357300 Rh1CG370300 Rh1DG387700
rosa_wichuraiana	Rw1G034060 Rw1G034280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	62
Acc16I	TGCGCA	1 cut(s)	96
AccB7I	CCANNNNNTGG	1 cut(s)	147
AccI	GTMKAC	1 cut(s)	288
AciI	CCGC	3 cut(s)	129, 446, 482
AclWI	GGATC	1 cut(s)	241
AfaI	GTAC	1 cut(s)	395
AfiI	CCNNNNNNNGG	3 cut(s)	147, 327, 346
AflIII	ACRYGT	1 cut(s)	396
AgsI	TTSAA	1 cut(s)	211
AjnI	CCWGG	2 cut(s)	33, 229
AluBI	AGCT	3 cut(s)	61, 260, 363
AluI	AGCT	3 cut(s)	61, 260, 363
Alw26I	GTCTC	1 cut(s)	39
AlwI	GGATC	1 cut(s)	241
AoxI	GGCC	3 cut(s)	111, 177, 190
ApeKI	GCWGC	1 cut(s)	461
AspLEI	GCGC	3 cut(s)	97, 352, 427
AspS9I	GGNCC	1 cut(s)	190
AsuC2I	CCSGG	1 cut(s)	163
AsuHPI	GGTGA	2 cut(s)	392, 530
AsuII	TTCGAA	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	341
BarI	GAAGNNNNNNTAC	2 cut(s)	386, 418
BbsI	GAAGAC	1 cut(s)	477
BbvI	GCAGC	1 cut(s)	448
BccI	CCATC	1 cut(s)	277
BceAI	ACGGC	1 cut(s)	64
BciT130I	CCWGG	2 cut(s)	35, 231
BcnI	CCSGG	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	1 cut(s)	257
BisI	GCNGC	1 cut(s)	462
BlpI	GCTNAGC	1 cut(s)	167
BlsI	GCNGC	1 cut(s)	463
Bme1390I	CCNGG	3 cut(s)	35, 163, 231
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	1 cut(s)	254
BmrFI	CCNGG	3 cut(s)	35, 163, 231
BmsI	GCATC	1 cut(s)	167
BpiI	GAAGAC	1 cut(s)	477
Bpu1102I	GCTNAGC	1 cut(s)	167
Bpu14I	TTCGAA	1 cut(s)	184
BpuMI	CCSGG	1 cut(s)	163
BsaAI	YACGTR	1 cut(s)	397
BsaJI	CCNNGG	3 cut(s)	108, 229, 465
Bsc4I	CCNNNNNNNGG	3 cut(s)	147, 327, 346
Bse118I	RCCGGY	1 cut(s)	192
Bse1I	ACTGG	1 cut(s)	104
Bse3DI	GCAATG	1 cut(s)	420
BseBI	CCWGG	2 cut(s)	35, 231
BseDI	CCNNGG	3 cut(s)	108, 229, 465
BseGI	GGATG	1 cut(s)	158
BseLI	CCNNNNNNNGG	3 cut(s)	147, 327, 346
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	1 cut(s)	326
BseNI	ACTGG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	448
BshFI	GGCC	3 cut(s)	113, 179, 192
BsiSI	CCGG	3 cut(s)	162, 172, 193
BslFI	GGGAC	1 cut(s)	343
BslI	CCNNNNNNNGG	3 cut(s)	147, 327, 346
BsmAI	GTCTC	1 cut(s)	39
BsmBI	CGTCTC	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	343
BsnI	GGCC	3 cut(s)	113, 179, 192
Bsp119I	TTCGAA	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	341
Bsp143I	GATC	1 cut(s)	233
Bsp1720I	GCTNAGC	1 cut(s)	167
BspACI	CCGC	3 cut(s)	129, 446, 482
BspANI	GGCC	3 cut(s)	113, 179, 192
BspCNI	CTCAG	1 cut(s)	327
BspLI	GGNNCC	1 cut(s)	254
BspPI	GGATC	1 cut(s)	241
BspQI	GCTCTTC	1 cut(s)	485
BspT104I	TTCGAA	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	420
BsrFI	RCCGGY	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	104
BssAI	RCCGGY	1 cut(s)	192
BssECI	CCNNGG	3 cut(s)	108, 229, 465
BssMI	GATC	1 cut(s)	233
BssT1I	CCWWGG	1 cut(s)	465
Bst2UI	CCWGG	2 cut(s)	35, 231
Bst4CI	ACNGT	1 cut(s)	13
Bst6I	CTCTTC	1 cut(s)	485
BstBAI	YACGTR	1 cut(s)	397
BstBI	TTCGAA	1 cut(s)	184
BstC8I	GCNNGC	2 cut(s)	105, 138
BstDEI	CTNAG	2 cut(s)	167, 335
BstF5I	GGATG	1 cut(s)	158
BstHHI	GCGC	3 cut(s)	97, 352, 427
BstKTI	GATC	1 cut(s)	236
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	1 cut(s)	233
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 142, 266
BstNI	CCWGG	2 cut(s)	35, 231
BstSCI	CCNGG	3 cut(s)	33, 161, 229
BstV1I	GCAGC	1 cut(s)	448
BstV2I	GAAGAC	1 cut(s)	477
BsuRI	GGCC	3 cut(s)	113, 179, 192
BtsCI	GGATG	1 cut(s)	158
BtsI	GCAGTG	1 cut(s)	152
BtsIMutI	CAGTG	2 cut(s)	97, 152
Cac8I	GCNNGC	2 cut(s)	105, 138
CfoI	GCGC	3 cut(s)	97, 352, 427
Cfr10I	RCCGGY	1 cut(s)	192
Cfr13I	GGNCC	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	394
CviQI	GTAC	1 cut(s)	394
DdeI	CTNAG	2 cut(s)	167, 335
DpnI	GATC	1 cut(s)	235
DpnII	GATC	1 cut(s)	233
DrdI	GACNNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	62
Eam1104I	CTCTTC	1 cut(s)	485
EarI	CTCTTC	1 cut(s)	485
EciI	GGCGGA	1 cut(s)	461
Eco130I	CCWWGG	1 cut(s)	465
Eco147I	AGGCCT	1 cut(s)	179
Eco24I	GRGCYC	1 cut(s)	341
EcoRII	CCWGG	2 cut(s)	33, 229
EcoT14I	CCWWGG	1 cut(s)	465
EcoT38I	GRGCYC	1 cut(s)	341
ErhI	CCWWGG	1 cut(s)	465
Esp3I	CGTCTC	1 cut(s)	39
FaiI	YATR	1 cut(s)	368
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FaqI	GGGAC	1 cut(s)	343
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	1 cut(s)	462
FokI	GGATG	1 cut(s)	145
FriOI	GRGCYC	1 cut(s)	341
Fsp4HI	GCNGC	1 cut(s)	462
FspBI	CTAG	1 cut(s)	257
FspI	TGCGCA	1 cut(s)	96
GlaI	GCGC	3 cut(s)	96, 351, 426
GluI	GCNGC	1 cut(s)	462
HaeIII	GGCC	3 cut(s)	113, 179, 192
HapII	CCGG	3 cut(s)	162, 172, 193
HhaI	GCGC	3 cut(s)	97, 352, 427
Hin6I	GCGC	3 cut(s)	95, 350, 425
HinP1I	GCGC	3 cut(s)	95, 350, 425
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	5 cut(s)	207, 247, 331, 343, 383
HpaII	CCGG	3 cut(s)	162, 172, 193
HphI	GGTGA	2 cut(s)	392, 530
Hpy166II	GTNNAC	2 cut(s)	16, 289
Hpy188I	TCNGA	1 cut(s)	336
Hpy188III	TCNNGA	1 cut(s)	321
Hpy8I	GTNNAC	2 cut(s)	16, 289
HpyAV	CCTTC	3 cut(s)	82, 169, 448
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	1 cut(s)	396
HpyCH4V	TGCA	2 cut(s)	158, 275
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 142, 266
HpyF3I	CTNAG	2 cut(s)	167, 335
HpySE526I	ACGT	1 cut(s)	396
HspAI	GCGC	3 cut(s)	95, 350, 425
Kzo9I	GATC	1 cut(s)	233
LguI	GCTCTTC	1 cut(s)	485
Lsp1109I	GCAGC	1 cut(s)	448
LweI	GCATC	1 cut(s)	167
MaeI	CTAG	1 cut(s)	257
MaeII	ACGT	1 cut(s)	396
MaeIII	GTNAC	1 cut(s)	518
MalI	GATC	1 cut(s)	235
MboI	GATC	1 cut(s)	233
MboII	GAAGA	7 cut(s)	22, 234, 394, 463, 482, 502, 520
MhlI	GDGCHC	1 cut(s)	341
MluCI	AATT	1 cut(s)	324
MlyI	GAGTC	2 cut(s)	325, 392
MnlI	CCTC	4 cut(s)	103, 427, 436, 498
MseI	TTAA	1 cut(s)	538
MspI	CCGG	3 cut(s)	162, 172, 193
MspR9I	CCNGG	3 cut(s)	35, 163, 231
MvaI	CCWGG	2 cut(s)	35, 231
MwoI	GCNNNNNNNGC	3 cut(s)	137, 142, 266
NciI	CCSGG	1 cut(s)	163
NdeII	GATC	1 cut(s)	233
NlaIV	GGNNCC	1 cut(s)	254
NmeAIII	GCCGAG	1 cut(s)	133
NmuCI	GTSAC	1 cut(s)	518
NsbI	TGCGCA	1 cut(s)	96
NspV	TTCGAA	1 cut(s)	184
PceI	AGGCCT	1 cut(s)	179
PciSI	GCTCTTC	1 cut(s)	485
PfeI	GAWTC	3 cut(s)	207, 247, 343
PflMI	CCANNNNNTGG	1 cut(s)	147
PkrI	GCNGC	1 cut(s)	463
PleI	GAGTC	2 cut(s)	325, 391
PpsI	GAGTC	2 cut(s)	325, 391
Ppu21I	YACGTR	1 cut(s)	397
Psp6I	CCWGG	2 cut(s)	33, 229
PspGI	CCWGG	2 cut(s)	33, 229
PspN4I	GGNNCC	1 cut(s)	254
PspPI	GGNCC	1 cut(s)	190
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
SapI	GCTCTTC	1 cut(s)	485
SaqAI	TTAA	1 cut(s)	538
SatI	GCNGC	1 cut(s)	462
Sau3AI	GATC	1 cut(s)	233
Sau96I	GGNCC	1 cut(s)	190
SchI	GAGTC	2 cut(s)	325, 392
ScrFI	CCNGG	3 cut(s)	35, 163, 231
SduI	GDGCHC	1 cut(s)	341
SetI	ASST	6 cut(s)	63, 74, 262, 365, 399, 459
SfaNI	GCATC	1 cut(s)	167
SfuI	TTCGAA	1 cut(s)	184
Sse9I	AATT	1 cut(s)	324
SseBI	AGGCCT	1 cut(s)	179
SsiI	CCGC	3 cut(s)	129, 446, 482
SspMI	CTAG	1 cut(s)	257
StuI	AGGCCT	1 cut(s)	179
StyD4I	CCNGG	3 cut(s)	33, 161, 229
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	2 cut(s)	184, 300
TasI	AATT	1 cut(s)	324
TfiI	GAWTC	3 cut(s)	207, 247, 343
Tru1I	TTAA	1 cut(s)	538
Tru9I	TTAA	1 cut(s)	538
TscAI	CASTG	2 cut(s)	104, 152
TseFI	GTSAC	1 cut(s)	518
TseI	GCWGC	1 cut(s)	461
Tsp45I	GTSAC	1 cut(s)	518
TspDTI	ATGAA	4 cut(s)	17, 394, 409, 503
TspRI	CASTG	2 cut(s)	104, 152
Van91I	CCANNNNNTGG	1 cut(s)	147
XmiI	GTMKAC	1 cut(s)	288
XspI	CTAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.