Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039395.1

Orthogroup ID

OG0013268

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2180

Gene Structure 2180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039395.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atgaatgactcggtagacaagctagtgatcttcctagcaaagagagatggcatagacaagcttgtcaagacgttccaatatgtctccaagcttgtgcactggcatgccgagtccactaacccgaagatggcagagagattcaagcagtgggaggtttcgtctggccttagccgaaaggcttttcggactggcaggttcctcaccggattcaatgcaatgagacgaagccctggatcaacgccaactcttcggttcttggctgttcttgctaatgctggtgagatgatatacttctttttcgaccattttctttggttgtcaaaaattgggactttggacccaagtttggctagaaagatgagcttcatttccgcatttggtgagtcctttgggtacattttcttcattatatctgattttatcgcgctaaaagaagggcttgaggaagagaggaaggttatgagtttggaggacaagtccattgagaagaagaatgagagcataagaaagattagaagtgatagagtgatgaggttaatggctgtagcagctaatgttgcagacttgcttattgcaattgctgatatcgagcctaatccattctgcaaccacactgtgactcttgggatcagtggattggtctctgcttggtccgatcagatggcggacggaagcggtcactcgcgctatgtgaagctgacgaaagatcaagcgccgctgcaggaggacattaagcccggcgagctcaatcagcccatcgatgttcctcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0006996 GO:0007031 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016559 GO:0031090 GO:0031903 GO:0032535 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

PEX11

Protein Analysis

257

Amino Acids

29.02

Weight (kDa)

8.87

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47430
fragaria_vesca	FvH4_7g27470
malus_domestica	MD01G1182600.v1.1 MD07G1253300.v1.1
prunus_persica	Prupe.2G276800_v2.0.a1
pyrus_communis	pycom01g19280
rosa_chinensis	RchiOBHm_Chr1g0374261
rosa_laevigata	RLG00000026748
rosa_multiflora	Rmu_co8391081.1_g000001 Rmu_sc0039395.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283610
rosa_rugosa	Rorug01G0382400
rosa_samantha	Rh1AG393100 Rh1BG357300 Rh1CG370300 Rh1DG387700
rosa_wichuraiana	Rw1G034060 Rw1G034280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	62
Acc36I	ACCTGC	1 cut(s)	183
AccI	GTMKAC	1 cut(s)	15
AccII	CGCG	2 cut(s)	425, 685
AciI	CCGC	4 cut(s)	372, 665, 675, 716
AclWI	GGATC	2 cut(s)	241, 635
AdeI	CACNNNGTG	1 cut(s)	616
AfaI	GTAC	1 cut(s)	395
AfiI	CCNNNNNNNGG	2 cut(s)	127, 346
AgsI	TTSAA	2 cut(s)	142, 211
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	7 cut(s)	22, 61, 91, 363, 551, 697, 745
AluI	AGCT	7 cut(s)	22, 61, 91, 363, 551, 697, 745
Alw21I	GWGCWC	2 cut(s)	99, 747
Alw26I	GTCTC	3 cut(s)	88, 214, 646
Alw44I	GTGCAC	1 cut(s)	95
AlwI	GGATC	2 cut(s)	241, 635
AoxI	GGCC	1 cut(s)	163
ApaLI	GTGCAC	1 cut(s)	95
ApeKI	GCWGC	2 cut(s)	548, 718
AspLEI	GCGC	3 cut(s)	427, 687, 715
AspS9I	GGNCC	2 cut(s)	337, 651
AsuC2I	CCSGG	1 cut(s)	738
AsuHPI	GGTGA	3 cut(s)	193, 290, 392
AvaII	GGWCC	2 cut(s)	337, 651
BaeGI	GKGCMC	1 cut(s)	99
BanII	GRGCYC	1 cut(s)	747
BarI	GAAGNNNNNNTAC	2 cut(s)	386, 418
Bbv12I	GWGCWC	2 cut(s)	99, 747
BbvI	GCAGC	2 cut(s)	560, 705
BccI	CCATC	4 cut(s)	41, 121, 655, 764
BciT130I	CCWGG	1 cut(s)	231
BcnI	CCSGG	1 cut(s)	738
BcoDI	GTCTC	3 cut(s)	88, 214, 646
BfaI	CTAG	3 cut(s)	23, 35, 351
BfmI	CTRYAG	2 cut(s)	543, 719
BfoI	RGCGCY	1 cut(s)	716
BfuAI	ACCTGC	1 cut(s)	183
BisI	GCNGC	3 cut(s)	549, 716, 719
BlsI	GCNGC	3 cut(s)	550, 717, 720
Bme1390I	CCNGG	2 cut(s)	231, 738
Bme18I	GGWCC	2 cut(s)	337, 651
BmgT120I	GGNCC	2 cut(s)	337, 651
BmiI	GGNNCC	2 cut(s)	197, 339
BmrFI	CCNGG	2 cut(s)	231, 738
Bpu10I	CCTNAGC	1 cut(s)	167
BpuEI	CTTGAG	1 cut(s)	461
BpuMI	CCSGG	1 cut(s)	738
Bsa29I	ATCGAT	1 cut(s)	759
BsaI	GGTCTC	1 cut(s)	646
BsaJI	CCNNGG	1 cut(s)	229
BsaWI	WCCGGW	1 cut(s)	203
BsaXI	ACNNNNNCTCC	4 cut(s)	143, 173, 461, 491
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 346
Bse1I	ACTGG	2 cut(s)	104, 193
Bse3DI	GCAATG	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	231
BseCI	ATCGAT	1 cut(s)	759
BseDI	CCNNGG	1 cut(s)	229
BseLI	CCNNNNNNNGG	2 cut(s)	127, 346
BseMI	GCAATG	1 cut(s)	222
BseNI	ACTGG	2 cut(s)	104, 193
BseSI	GKGCMC	1 cut(s)	99
BseXI	GCAGC	2 cut(s)	560, 705
Bsh1236I	CGCG	2 cut(s)	425, 685
BshFI	GGCC	1 cut(s)	165
BshVI	ATCGAT	1 cut(s)	759
BsiHKAI	GWGCWC	2 cut(s)	99, 747
BsiSI	CCGG	2 cut(s)	204, 738
BslFI	GGGAC	1 cut(s)	343
BslI	CCNNNNNNNGG	2 cut(s)	127, 346
BsmAI	GTCTC	3 cut(s)	88, 214, 646
BsmBI	CGTCTC	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	343
BsnI	GGCC	1 cut(s)	165
Bso31I	GGTCTC	1 cut(s)	646
Bsp1286I	GDGCHC	2 cut(s)	99, 747
Bsp143I	GATC	5 cut(s)	27, 233, 627, 655, 706
BspACI	CCGC	4 cut(s)	372, 665, 675, 716
BspANI	GGCC	1 cut(s)	165
BspDI	ATCGAT	1 cut(s)	759
BspFNI	CGCG	2 cut(s)	425, 685
BspLI	GGNNCC	2 cut(s)	197, 339
BspMAI	CTGCAG	1 cut(s)	723
BspMI	ACCTGC	1 cut(s)	183
BspPI	GGATC	2 cut(s)	241, 635
BspTNI	GGTCTC	1 cut(s)	646
BsrDI	GCAATG	1 cut(s)	222
BsrI	ACTGG	2 cut(s)	104, 193
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	5 cut(s)	27, 233, 627, 655, 706
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	1 cut(s)	616
Bst6I	CTCTTC	2 cut(s)	252, 441
BstC8I	GCNNGC	2 cut(s)	105, 743
BstDEI	CTNAG	2 cut(s)	167, 768
BstFNI	CGCG	2 cut(s)	425, 685
BstH2I	RGCGCY	1 cut(s)	716
BstHHI	GCGC	3 cut(s)	427, 687, 715
BstKTI	GATC	5 cut(s)	30, 236, 630, 658, 709
BstMAI	GTCTC	3 cut(s)	88, 214, 646
BstMBI	GATC	5 cut(s)	27, 233, 627, 655, 706
BstMWI	GCNNNNNNNGC	5 cut(s)	266, 548, 557, 742, 751
BstNI	CCWGG	1 cut(s)	231
BstNSI	RCATGY	1 cut(s)	107
BstSCI	CCNGG	2 cut(s)	229, 736
BstSFI	CTRYAG	2 cut(s)	543, 719
BstSLI	GKGCMC	1 cut(s)	99
BstUI	CGCG	2 cut(s)	425, 685
BstV1I	GCAGC	2 cut(s)	560, 705
Bsu15I	ATCGAT	1 cut(s)	759
BsuRI	GGCC	1 cut(s)	165
BsuTUI	ATCGAT	1 cut(s)	759
BtsI	GCAGTG	1 cut(s)	152
BtsIMutI	CAGTG	4 cut(s)	97, 152, 612, 637
BveI	ACCTGC	1 cut(s)	183
Cac8I	GCNNGC	2 cut(s)	105, 743
CfoI	GCGC	3 cut(s)	427, 687, 715
Cfr13I	GGNCC	2 cut(s)	337, 651
ClaI	ATCGAT	1 cut(s)	759
Csp6I	GTAC	1 cut(s)	394
CviAII	CATG	1 cut(s)	104
CviQI	GTAC	1 cut(s)	394
DdeI	CTNAG	2 cut(s)	167, 768
DpnI	GATC	5 cut(s)	29, 235, 629, 657, 708
DpnII	GATC	5 cut(s)	27, 233, 627, 655, 706
DraIII	CACNNNGTG	1 cut(s)	616
DrdI	GACNNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	62
Eam1104I	CTCTTC	2 cut(s)	252, 441
EarI	CTCTTC	2 cut(s)	252, 441
EciI	GGCGGA	1 cut(s)	680
Ecl136II	GAGCTC	1 cut(s)	745
Eco24I	GRGCYC	1 cut(s)	747
Eco31I	GGTCTC	1 cut(s)	646
Eco32I	GATATC	1 cut(s)	586
Eco47I	GGWCC	2 cut(s)	337, 651
Eco53kI	GAGCTC	1 cut(s)	745
EcoICRI	GAGCTC	1 cut(s)	745
EcoRII	CCWGG	1 cut(s)	229
EcoRV	GATATC	1 cut(s)	586
EcoT38I	GRGCYC	1 cut(s)	747
Esp3I	CGTCTC	1 cut(s)	214
FaeI	CATG	1 cut(s)	107
FaiI	YATR	8 cut(s)	53, 81, 105, 289, 410, 461, 503, 690
FalI	AAGNNNNNCTT	4 cut(s)	347, 379, 423, 455
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	1 cut(s)	103
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	3 cut(s)	549, 716, 719
FriOI	GRGCYC	1 cut(s)	747
Fsp4HI	GCNGC	3 cut(s)	549, 716, 719
FspBI	CTAG	3 cut(s)	23, 35, 351
GlaI	GCGC	3 cut(s)	426, 686, 714
GluI	GCNGC	3 cut(s)	549, 716, 719
HaeII	RGCGCY	1 cut(s)	716
HaeIII	GGCC	1 cut(s)	165
HapII	CCGG	2 cut(s)	204, 738
HhaI	GCGC	3 cut(s)	427, 687, 715
Hin1II	CATG	1 cut(s)	107
Hin6I	GCGC	3 cut(s)	425, 685, 713
HinP1I	GCGC	3 cut(s)	425, 685, 713
HindIII	AAGCTT	2 cut(s)	59, 89
HinfI	GANTC	6 cut(s)	8, 110, 138, 207, 383, 619
HpaII	CCGG	2 cut(s)	204, 738
HphI	GGTGA	3 cut(s)	193, 290, 392
Hpy166II	GTNNAC	3 cut(s)	16, 97, 114
Hpy188I	TCNGA	4 cut(s)	186, 415, 655, 660
Hpy188III	TCNNGA	1 cut(s)	67
Hpy8I	GTNNAC	3 cut(s)	16, 97, 114
HpyAV	CCTTC	2 cut(s)	428, 448
HpyCH4III	ACNGT	1 cut(s)	616
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	6 cut(s)	97, 215, 560, 575, 606, 721
HpyF10VI	GCNNNNNNNGC	5 cut(s)	266, 548, 557, 742, 751
HpyF3I	CTNAG	2 cut(s)	167, 768
HpySE526I	ACGT	1 cut(s)	71
Hsp92II	CATG	1 cut(s)	107
HspAI	GCGC	3 cut(s)	425, 685, 713
Kzo9I	GATC	5 cut(s)	27, 233, 627, 655, 706
Lsp1109I	GCAGC	2 cut(s)	560, 705
MaeI	CTAG	3 cut(s)	23, 35, 351
MaeII	ACGT	1 cut(s)	71
MaeIII	GTNAC	2 cut(s)	616, 677
MalI	GATC	5 cut(s)	29, 235, 629, 657, 708
MboI	GATC	5 cut(s)	27, 233, 627, 655, 706
MboII	GAAGA	7 cut(s)	22, 136, 239, 394, 458, 499, 502
MfeI	CAATTG	1 cut(s)	576
MhlI	GDGCHC	2 cut(s)	99, 747
MluCI	AATT	2 cut(s)	324, 576
MlyI	GAGTC	4 cut(s)	2, 119, 392, 613
MnlI	CCTC	7 cut(s)	145, 209, 436, 444, 463, 525, 718
MseI	TTAA	2 cut(s)	536, 732
MslI	CAYNNNNRTG	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	718
MspI	CCGG	2 cut(s)	204, 738
MspR9I	CCNGG	2 cut(s)	231, 738
MunI	CAATTG	1 cut(s)	576
MvaI	CCWGG	1 cut(s)	231
MvnI	CGCG	2 cut(s)	425, 685
MwoI	GCNNNNNNNGC	5 cut(s)	266, 548, 557, 742, 751
NciI	CCSGG	1 cut(s)	738
NdeII	GATC	5 cut(s)	27, 233, 627, 655, 706
NlaIII	CATG	1 cut(s)	107
NlaIV	GGNNCC	2 cut(s)	197, 339
NmeAIII	GCCGAG	1 cut(s)	133
NmuCI	GTSAC	2 cut(s)	616, 677
NspI	RCATGY	1 cut(s)	107
PaeI	GCATGC	1 cut(s)	107
PfeI	GAWTC	2 cut(s)	138, 207
PkrI	GCNGC	3 cut(s)	550, 717, 720
PleI	GAGTC	4 cut(s)	2, 118, 391, 613
PpsI	GAGTC	4 cut(s)	2, 118, 391, 613
Psp124BI	GAGCTC	1 cut(s)	747
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	2 cut(s)	197, 339
PspPI	GGNCC	2 cut(s)	337, 651
PstI	CTGCAG	1 cut(s)	723
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
RseI	CAYNNNNRTG	1 cut(s)	102
SacI	GAGCTC	1 cut(s)	747
SaqAI	TTAA	2 cut(s)	536, 732
SatI	GCNGC	3 cut(s)	549, 716, 719
Sau3AI	GATC	5 cut(s)	27, 233, 627, 655, 706
Sau96I	GGNCC	2 cut(s)	337, 651
SchI	GAGTC	4 cut(s)	2, 119, 392, 613
ScrFI	CCNGG	2 cut(s)	231, 738
SduI	GDGCHC	2 cut(s)	99, 747
SfcI	CTRYAG	2 cut(s)	543, 719
SinI	GGWCC	2 cut(s)	337, 651
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
SphI	GCATGC	1 cut(s)	107
Sse9I	AATT	2 cut(s)	324, 576
SsiI	CCGC	4 cut(s)	372, 665, 675, 716
SspMI	CTAG	3 cut(s)	23, 35, 351
SstI	GAGCTC	1 cut(s)	747
StyD4I	CCNGG	2 cut(s)	229, 736
TaaI	ACNGT	1 cut(s)	616
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	3 cut(s)	300, 588, 759
TasI	AATT	2 cut(s)	324, 576
TauI	GCSGC	1 cut(s)	718
TfiI	GAWTC	2 cut(s)	138, 207
Tru1I	TTAA	2 cut(s)	536, 732
Tru9I	TTAA	2 cut(s)	536, 732
TscAI	CASTG	4 cut(s)	104, 152, 619, 637
TseFI	GTSAC	2 cut(s)	616, 677
TseI	GCWGC	2 cut(s)	548, 718
Tsp45I	GTSAC	2 cut(s)	616, 677
TspDTI	ATGAA	3 cut(s)	17, 355, 394
TspGWI	ACGGA	1 cut(s)	684
TspRI	CASTG	4 cut(s)	104, 152, 619, 637
VneI	GTGCAC	1 cut(s)	95
VpaK11BI	GGWCC	2 cut(s)	337, 651
XceI	RCATGY	1 cut(s)	107
XmiI	GTMKAC	1 cut(s)	15
XspI	CTAG	3 cut(s)	23, 35, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.