MD01G1182600.v1.1

Peroxisomal membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0013268
Physical Location & Seq
Reverse (-)
28120533 .. 28121213
681 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1182600.v1.1.491

Sequence Viewer

Length: 681 bp
ATGAACGACACAGTAGACAAACTTGTTATCTTCCTGGCAAAGAGAGACGGCATTGACAAGCTTGTCAAAACCTTCCAATACGTCTCCAAGATTGCGCACTGGCACGCCGAGGCCAAGAACCCCGAAATCGCGCAGCGAGCCAAGCAATGGGAAGTTGCATCCGGGCTTAGCCGGAAGGCCTTTCGAACGGGGCGGTTTCTCACGGGATTCAATGCGCTGAGAAGAAGCCCCGGCTCCACCCCTACGCTTCGGTTCCTAGCCGTTCTTGCTAATGCTGGGGAGATGGTCTACTTCTTTTTCGACCATTTTCTCTGGCTGTCCAGAATCGGGACTCTGAACCCGAATCTGGCGCGAAAGATGAGCTTTATATCGGCGTTCGGTGAGTCGTTTGGGTATGTTTTCTTCATCGTTTTGGATTTCATTGCGTTGAAAGAGGGCGTGGAGACGGAGAAAAAGGTTGCTGCCTTGGAGGACAAGTCTGCGGAGACGAAGAGCGAGAGTTTGAGAAAGATTAGGGCTGATAGAGTGATGAGATTAATGGCAGTGGCGGCTAATGTTGCGGATTTGATCATCGGAATCGCGGACATCGAGCCTAATCCGTTCTGTAATCATGCTGTCACTCTCGGGATTAGTGGTTTGGTATCTGCATGGTCCGGTTGGTACAGAAACTGGCCTTCATAA

Protein Analysis

227

Amino Acids

25.37

Weight (kDa)

9.68

Isoelectric Point (pI)

28.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PEX11 PF05648 5 - 224 7.4e-57 Peroxisomal biogenesis factor 11 (PEX11)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013268)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47430
fragaria_vesca FvH4_7g27470
malus_domestica MD01G1182600.v1.1 MD07G1253300.v1.1
prunus_persica Prupe.2G276800_v2.0.a1
pyrus_communis pycom01g19280
rosa_chinensis RchiOBHm_Chr1g0374261
rosa_laevigata RLG00000026748
rosa_multiflora Rmu_co8391081.1_g000001 Rmu_sc0039395.1_g000001
rosa_roxburghii Rroxscaffold_4G00283610
rosa_rugosa Rorug01G0382400
rosa_samantha Rh1AG393100 Rh1BG357300 Rh1CG370300 Rh1DG387700
rosa_wichuraiana Rw1G034060 Rw1G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 62
Acc16I TGCGCA 1 cut(s) 96
AccB7I CCANNNNNTGG 1 cut(s) 147
AccI GTMKAC 2 cut(s) 15, 288
AccII CGCG 3 cut(s) 131, 352, 581
AciI CCGC 5 cut(s) 193, 482, 548, 560, 581
AfaI GTAC 1 cut(s) 662
AfiI CCNNNNNNNGG 3 cut(s) 147, 327, 346
AgsI TTSAA 2 cut(s) 211, 430
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 2 cut(s) 61, 363
AluI AGCT 2 cut(s) 61, 363
Alw26I GTCTC 4 cut(s) 39, 88, 437, 479
AlwNI CAGNNNCTG 1 cut(s) 669
Ama87I CYCGRG 1 cut(s) 623
AoxI GGCC 3 cut(s) 111, 177, 671
ApeKI GCWGC 2 cut(s) 133, 461
AseI ATTAAT 1 cut(s) 536
AspLEI GCGC 4 cut(s) 97, 133, 217, 352
AspS9I GGNCC 1 cut(s) 651
AsuC2I CCSGG 2 cut(s) 163, 231
AsuHPI GGTGA 1 cut(s) 392
AsuII TTCGAA 1 cut(s) 184
AvaI CYCGRG 1 cut(s) 623
AvaII GGWCC 1 cut(s) 651
BarI GAAGNNNNNNTAC 2 cut(s) 386, 418
BbvI GCAGC 2 cut(s) 145, 448
BccI CCATC 1 cut(s) 277
BceAI ACGGC 2 cut(s) 64, 245
BciT130I CCWGG 1 cut(s) 35
BclI TGATCA 1 cut(s) 567
BcnI CCSGG 2 cut(s) 163, 231
BcoDI GTCTC 4 cut(s) 39, 88, 437, 479
BfaI CTAG 1 cut(s) 257
BisI GCNGC 3 cut(s) 134, 462, 549
BlpI GCTNAGC 1 cut(s) 167
BlsI GCNGC 3 cut(s) 135, 463, 550
Bme1390I CCNGG 3 cut(s) 35, 163, 231
Bme18I GGWCC 1 cut(s) 651
BmeT110I CYCGRG 1 cut(s) 623
BmgT120I GGNCC 1 cut(s) 651
BmiI GGNNCC 2 cut(s) 235, 254
BmrFI CCNGG 3 cut(s) 35, 163, 231
BmsI GCATC 1 cut(s) 167
Bpu1102I GCTNAGC 1 cut(s) 167
Bpu14I TTCGAA 1 cut(s) 184
BpuMI CCSGG 2 cut(s) 163, 231
BsaJI CCNNGG 3 cut(s) 108, 229, 465
BsaWI WCCGGW 1 cut(s) 653
BsaXI ACNNNNNCTCC 2 cut(s) 461, 491
Bsc4I CCNNNNNNNGG 3 cut(s) 147, 327, 346
Bse1I ACTGG 2 cut(s) 104, 674
Bse3DI GCAATG 2 cut(s) 152, 420
BseBI CCWGG 1 cut(s) 35
BseDI CCNNGG 3 cut(s) 108, 229, 465
BseGI GGATG 1 cut(s) 158
BseLI CCNNNNNNNGG 3 cut(s) 147, 327, 346
BseMI GCAATG 2 cut(s) 152, 420
BseMII CTCAG 1 cut(s) 209
BseNI ACTGG 2 cut(s) 104, 674
BseXI GCAGC 2 cut(s) 145, 448
BseYI CCCAGC 1 cut(s) 275
Bsh1236I CGCG 3 cut(s) 131, 352, 581
BshFI GGCC 3 cut(s) 113, 179, 673
BsiHKCI CYCGRG 1 cut(s) 623
BsiSI CCGG 4 cut(s) 162, 172, 231, 654
BslFI GGGAC 1 cut(s) 343
BslI CCNNNNNNNGG 3 cut(s) 147, 327, 346
BsmAI GTCTC 4 cut(s) 39, 88, 437, 479
BsmBI CGTCTC 4 cut(s) 39, 88, 437, 479
BsmFI GGGAC 1 cut(s) 343
BsnI GGCC 3 cut(s) 113, 179, 673
BsoBI CYCGRG 1 cut(s) 623
Bsp119I TTCGAA 1 cut(s) 184
Bsp143I GATC 1 cut(s) 567
Bsp1720I GCTNAGC 1 cut(s) 167
BspACI CCGC 5 cut(s) 193, 482, 548, 560, 581
BspANI GGCC 3 cut(s) 113, 179, 673
BspCNI CTCAG 1 cut(s) 210
BspFNI CGCG 3 cut(s) 131, 352, 581
BspLI GGNNCC 2 cut(s) 235, 254
BspQI GCTCTTC 1 cut(s) 485
BspT104I TTCGAA 1 cut(s) 184
BsrDI GCAATG 2 cut(s) 152, 420
BsrI ACTGG 2 cut(s) 104, 674
BssECI CCNNGG 3 cut(s) 108, 229, 465
BssMI GATC 1 cut(s) 567
BssT1I CCWWGG 1 cut(s) 465
Bst2UI CCWGG 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 13
Bst6I CTCTTC 1 cut(s) 485
BstBI TTCGAA 1 cut(s) 184
BstC8I GCNNGC 2 cut(s) 105, 138
BstDEI CTNAG 2 cut(s) 167, 218
BstF5I GGATG 1 cut(s) 158
BstFNI CGCG 3 cut(s) 131, 352, 581
BstHHI GCGC 4 cut(s) 97, 133, 217, 352
BstKTI GATC 1 cut(s) 570
BstMAI GTCTC 4 cut(s) 39, 88, 437, 479
BstMBI GATC 1 cut(s) 567
BstMWI GCNNNNNNNGC 5 cut(s) 137, 142, 266, 548, 557
BstNI CCWGG 1 cut(s) 35
BstSCI CCNGG 3 cut(s) 33, 161, 229
BstUI CGCG 3 cut(s) 131, 352, 581
BstV1I GCAGC 2 cut(s) 145, 448
BsuRI GGCC 3 cut(s) 113, 179, 673
BtsCI GGATG 1 cut(s) 158
BtsI GCAGTG 1 cut(s) 549
BtsIMutI CAGTG 2 cut(s) 97, 549
Cac8I GCNNGC 2 cut(s) 105, 138
CaiI CAGNNNCTG 1 cut(s) 669
CfoI GCGC 4 cut(s) 97, 133, 217, 352
Cfr13I GGNCC 1 cut(s) 651
Csp6I GTAC 1 cut(s) 661
CviAII CATG 2 cut(s) 611, 648
CviQI GTAC 1 cut(s) 661
DdeI CTNAG 2 cut(s) 167, 218
DpnI GATC 1 cut(s) 569
DpnII GATC 1 cut(s) 567
DrdI GACNNNNNNGTC 1 cut(s) 62
DseDI GACNNNNNNGTC 1 cut(s) 62
Eam1104I CTCTTC 1 cut(s) 485
EarI CTCTTC 1 cut(s) 485
Eco130I CCWWGG 1 cut(s) 465
Eco147I AGGCCT 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 651
Eco88I CYCGRG 1 cut(s) 623
EcoRII CCWGG 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 465
Esp3I CGTCTC 4 cut(s) 39, 88, 437, 479
FaeI CATG 2 cut(s) 614, 651
FaiI YATR 5 cut(s) 368, 396, 612, 649, 679
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FaqI GGGAC 1 cut(s) 343
FatI CATG 2 cut(s) 610, 647
FbaI TGATCA 1 cut(s) 567
FblI GTMKAC 2 cut(s) 15, 288
Fnu4HI GCNGC 3 cut(s) 134, 462, 549
FokI GGATG 1 cut(s) 145
Fsp4HI GCNGC 3 cut(s) 134, 462, 549
FspBI CTAG 1 cut(s) 257
FspI TGCGCA 1 cut(s) 96
GlaI GCGC 4 cut(s) 96, 132, 216, 351
GluI GCNGC 3 cut(s) 134, 462, 549
GsaI CCCAGC 1 cut(s) 279
HaeIII GGCC 3 cut(s) 113, 179, 673
HapII CCGG 4 cut(s) 162, 172, 231, 654
HhaI GCGC 4 cut(s) 97, 133, 217, 352
Hin1II CATG 2 cut(s) 614, 651
Hin6I GCGC 4 cut(s) 95, 131, 215, 350
HinP1I GCGC 4 cut(s) 95, 131, 215, 350
HindIII AAGCTT 1 cut(s) 59
HinfI GANTC 6 cut(s) 207, 324, 331, 343, 383, 576
HpaII CCGG 4 cut(s) 162, 172, 231, 654
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 2 cut(s) 16, 289
Hpy188I TCNGA 2 cut(s) 336, 575
Hpy188III TCNNGA 3 cut(s) 321, 328, 625
Hpy8I GTNNAC 2 cut(s) 16, 289
HpyAV CCTTC 2 cut(s) 82, 169
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 2 cut(s) 158, 647
HpyF10VI GCNNNNNNNGC 5 cut(s) 137, 142, 266, 548, 557
HpyF3I CTNAG 2 cut(s) 167, 218
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 2 cut(s) 614, 651
HspAI GCGC 4 cut(s) 95, 131, 215, 350
Ksp22I TGATCA 1 cut(s) 567
Kzo9I GATC 1 cut(s) 567
LguI GCTCTTC 1 cut(s) 485
LmnI GCTCC 1 cut(s) 239
Lsp1109I GCAGC 2 cut(s) 145, 448
LweI GCATC 1 cut(s) 167
MaeI CTAG 1 cut(s) 257
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 616
MalI GATC 1 cut(s) 569
MboI GATC 1 cut(s) 567
MboII GAAGA 4 cut(s) 22, 234, 394, 502
MlyI GAGTC 2 cut(s) 325, 392
MnlI CCTC 3 cut(s) 103, 427, 463
MseI TTAA 1 cut(s) 536
MspI CCGG 4 cut(s) 162, 172, 231, 654
MspR9I CCNGG 3 cut(s) 35, 163, 231
MvaI CCWGG 1 cut(s) 35
MvnI CGCG 3 cut(s) 131, 352, 581
MwoI GCNNNNNNNGC 5 cut(s) 137, 142, 266, 548, 557
NciI CCSGG 2 cut(s) 163, 231
NdeII GATC 1 cut(s) 567
NlaIII CATG 2 cut(s) 614, 651
NlaIV GGNNCC 2 cut(s) 235, 254
NmeAIII GCCGAG 1 cut(s) 133
NmuCI GTSAC 1 cut(s) 616
NsbI TGCGCA 1 cut(s) 96
NspV TTCGAA 1 cut(s) 184
PceI AGGCCT 1 cut(s) 179
PciSI GCTCTTC 1 cut(s) 485
PcsI WCGNNNNNNNCGW 1 cut(s) 585
PfeI GAWTC 4 cut(s) 207, 324, 343, 576
PflMI CCANNNNNTGG 1 cut(s) 147
PkrI GCNGC 3 cut(s) 135, 463, 550
PleI GAGTC 2 cut(s) 325, 391
PpsI GAGTC 2 cut(s) 325, 391
PshBI ATTAAT 1 cut(s) 536
Psp6I CCWGG 1 cut(s) 33
PspFI CCCAGC 1 cut(s) 275
PspGI CCWGG 1 cut(s) 33
PspN4I GGNNCC 2 cut(s) 235, 254
PspPI GGNCC 1 cut(s) 651
PstNI CAGNNNCTG 1 cut(s) 669
RsaI GTAC 1 cut(s) 662
RsaNI GTAC 1 cut(s) 661
SapI GCTCTTC 1 cut(s) 485
SaqAI TTAA 1 cut(s) 536
SatI GCNGC 3 cut(s) 134, 462, 549
Sau3AI GATC 1 cut(s) 567
Sau96I GGNCC 1 cut(s) 651
SchI GAGTC 2 cut(s) 325, 392
ScrFI CCNGG 3 cut(s) 35, 163, 231
SetI ASST 5 cut(s) 63, 74, 84, 365, 459
SfaNI GCATC 1 cut(s) 167
SfuI TTCGAA 1 cut(s) 184
SinI GGWCC 1 cut(s) 651
SseBI AGGCCT 1 cut(s) 179
SsiI CCGC 5 cut(s) 193, 482, 548, 560, 581
SspMI CTAG 1 cut(s) 257
StuI AGGCCT 1 cut(s) 179
StyD4I CCNGG 3 cut(s) 33, 161, 229
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 1 cut(s) 13
TaiI ACGT 1 cut(s) 84
TaqI TCGA 3 cut(s) 184, 300, 588
TauI GCSGC 1 cut(s) 551
TfiI GAWTC 4 cut(s) 207, 324, 343, 576
Tru1I TTAA 1 cut(s) 536
Tru9I TTAA 1 cut(s) 536
TscAI CASTG 2 cut(s) 104, 549
TseFI GTSAC 1 cut(s) 616
TseI GCWGC 2 cut(s) 133, 461
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 4 cut(s) 17, 394, 409, 666
TspGWI ACGGA 2 cut(s) 461, 588
TspRI CASTG 2 cut(s) 104, 549
Van91I CCANNNNNTGG 1 cut(s) 147
VpaK11BI GGWCC 1 cut(s) 651
VspI ATTAAT 1 cut(s) 536
XmiI GTMKAC 2 cut(s) 15, 288
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.