Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0013268

Physical Location & Seq

Genomic Coordinates Reverse (-)

49484624 .. 49485520

Gene Structure 897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0382400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTCGCTGATTCCCAACCCATTCGGCCGCCGATCGGGCTCGTTCGACCCGTTCTCTCTTCACGTGTGGGACCACCACCACCACCACCCACTGGACCCCTGGCCCTTCCGCTCCGTCTCGTCGCAGTCCGAAACGGCGTCGTTCGCCCACGCGCACATCGACTGGAAGGAGACGCCGACGGCGCACGTGTTCAAGGCCGACGTGCCGGGCCTGCGTAAGGACGAGGTCAAGGTGGAGGTGGAGGACGGCAAGATCCTCCAGATCAGCGGAGAGCGGAAGCGCGATGTGGAGGAGAAGACCGACACGTGGCACCGGGTGGAGCGCAGCAGCTGCAGGTTCACGAGGCGGTTCCGGCTGCCGGAGAATGCGAGAGTGGAGCAGGTCCAGGCGGCGATGGAGAACGGCGTCCTCACCGTCACTGTGCCCAAGGAGGAGGCCAAGAAGGTCGATGTCAGGTCAATTGAGATTTCTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0006996 GO:0007031 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016559 GO:0031090 GO:0031903 GO:0032535 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

PEX11

Protein Analysis

158

Amino Acids

18.18

Weight (kDa)

6.8

Isoelectric Point (pI)

59.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	54 - 157	4.1e-30	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47430
fragaria_vesca	FvH4_7g27470
malus_domestica	MD01G1182600.v1.1 MD07G1253300.v1.1
prunus_persica	Prupe.2G276800_v2.0.a1
pyrus_communis	pycom01g19280
rosa_chinensis	RchiOBHm_Chr1g0374261
rosa_laevigata	RLG00000026748
rosa_multiflora	Rmu_co8391081.1_g000001 Rmu_sc0039395.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283610
rosa_rugosa	Rorug01G0382400
rosa_samantha	Rh1AG393100 Rh1BG357300 Rh1CG370300 Rh1DG387700
rosa_wichuraiana	Rw1G034060 Rw1G034280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	324, 370
AccB1I	GGYRCC	1 cut(s)	309
AccB7I	CCANNNNNTGG	1 cut(s)	91
AccBSI	CCGCTC	2 cut(s)	111, 274
AccII	CGCG	2 cut(s)	152, 282
AciI	CCGC	6 cut(s)	28, 109, 267, 274, 346, 389
AclWI	GGATC	1 cut(s)	247
AcoI	YGGCCR	1 cut(s)	25
AcvI	CACGTG	3 cut(s)	64, 187, 306
AcyI	GRCGYC	3 cut(s)	137, 173, 405
AdeI	CACNNNGTG	1 cut(s)	316
AfiI	CCNNNNNNNGG	5 cut(s)	34, 91, 217, 306, 358
AflIII	ACRYGT	3 cut(s)	63, 186, 303
AgsI	TTSAA	1 cut(s)	193
AjiI	CACGTC	1 cut(s)	202
AjnI	CCWGG	2 cut(s)	98, 384
AluBI	AGCT	1 cut(s)	330
AluI	AGCT	1 cut(s)	330
Alw26I	GTCTC	2 cut(s)	121, 164
AlwI	GGATC	1 cut(s)	247
AlwNI	CAGNNNCTG	1 cut(s)	330
AoxI	GGCC	5 cut(s)	25, 101, 195, 208, 435
ApeKI	GCWGC	4 cut(s)	324, 327, 330, 355
AspLEI	GCGC	4 cut(s)	154, 184, 282, 324
AspS9I	GGNCC	5 cut(s)	70, 94, 102, 208, 382
AsuC2I	CCSGG	2 cut(s)	207, 314
AsuHPI	GGTGA	1 cut(s)	403
AvaII	GGWCC	3 cut(s)	70, 94, 382
BaeGI	GKGCMC	1 cut(s)	426
BanI	GGYRCC	1 cut(s)	309
BanII	GRGCYC	1 cut(s)	41
BauI	CACGAG	1 cut(s)	340
BbrPI	CACGTG	3 cut(s)	64, 187, 306
BbsI	GAAGAC	1 cut(s)	302
BbvI	GCAGC	4 cut(s)	317, 336, 339, 342
BccI	CCATC	1 cut(s)	388
BceAI	ACGGC	4 cut(s)	150, 195, 262, 418
BciT130I	CCWGG	2 cut(s)	100, 386
BcnI	CCSGG	2 cut(s)	207, 314
BcoDI	GTCTC	2 cut(s)	121, 164
BfmI	CTRYAG	1 cut(s)	331
BfuAI	ACCTGC	2 cut(s)	324, 370
BglI	GCCNNNNNGGC	1 cut(s)	36
BisI	GCNGC	6 cut(s)	28, 325, 328, 331, 356, 390
BlsI	GCNGC	6 cut(s)	29, 326, 329, 332, 357, 391
Bme1390I	CCNGG	4 cut(s)	100, 207, 314, 386
Bme18I	GGWCC	3 cut(s)	70, 94, 382
BmgBI	CACGTC	1 cut(s)	202
BmgT120I	GGNCC	5 cut(s)	70, 94, 102, 208, 382
BmiI	GGNNCC	4 cut(s)	71, 96, 311, 350
BmrFI	CCNGG	4 cut(s)	100, 207, 314, 386
BpiI	GAAGAC	1 cut(s)	302
BpmI	CTGGAG	1 cut(s)	242
BpuMI	CCSGG	2 cut(s)	207, 314
BsaAI	YACGTR	3 cut(s)	64, 187, 306
BsaHI	GRCGYC	3 cut(s)	137, 173, 405
BsaJI	CCNNGG	2 cut(s)	98, 426
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 91, 217, 306, 358
Bse1I	ACTGG	2 cut(s)	96, 167
BseBI	CCWGG	2 cut(s)	100, 386
BseDI	CCNNGG	2 cut(s)	98, 426
BseLI	CCNNNNNNNGG	5 cut(s)	34, 91, 217, 306, 358
BseNI	ACTGG	2 cut(s)	96, 167
BseRI	GAGGAG	2 cut(s)	305, 446
BseSI	GKGCMC	1 cut(s)	426
BseX3I	CGGCCG	1 cut(s)	25
BseXI	GCAGC	4 cut(s)	317, 336, 339, 342
Bsh1236I	CGCG	2 cut(s)	152, 282
Bsh1285I	CGRYCG	2 cut(s)	28, 35
BshFI	GGCC	5 cut(s)	27, 103, 197, 210, 437
BshNI	GGYRCC	1 cut(s)	309
BsiEI	CGRYCG	2 cut(s)	28, 35
BsiSI	CCGG	4 cut(s)	206, 313, 352, 359
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	5 cut(s)	34, 91, 217, 306, 358
BsmAI	GTCTC	2 cut(s)	121, 164
BsmBI	CGTCTC	2 cut(s)	121, 164
BsmFI	GGGAC	1 cut(s)	83
BsmI	GAATGC	1 cut(s)	370
BsnI	GGCC	5 cut(s)	27, 103, 197, 210, 437
Bsp1286I	GDGCHC	2 cut(s)	41, 426
Bsp143I	GATC	3 cut(s)	32, 252, 261
BspACI	CCGC	6 cut(s)	28, 109, 267, 274, 346, 389
BspANI	GGCC	5 cut(s)	27, 103, 197, 210, 437
BspFNI	CGCG	2 cut(s)	152, 282
BspLI	GGNNCC	4 cut(s)	71, 96, 311, 350
BspMAI	CTGCAG	1 cut(s)	335
BspMI	ACCTGC	2 cut(s)	324, 370
BspPI	GGATC	1 cut(s)	247
BspT107I	GGYRCC	1 cut(s)	309
BsrBI	CCGCTC	2 cut(s)	111, 274
BsrI	ACTGG	2 cut(s)	96, 167
BssECI	CCNNGG	2 cut(s)	98, 426
BssMI	GATC	3 cut(s)	32, 252, 261
BssNI	GRCGYC	3 cut(s)	137, 173, 405
BssSI	CACGAG	1 cut(s)	340
BssT1I	CCWWGG	1 cut(s)	426
Bst2BI	CACGAG	1 cut(s)	340
Bst2UI	CCWGG	2 cut(s)	100, 386
Bst4CI	ACNGT	2 cut(s)	415, 421
Bst6I	CTCTTC	1 cut(s)	63
BstACI	GRCGYC	3 cut(s)	137, 173, 405
BstAPI	GCANNNNNTGC	1 cut(s)	330
BstBAI	YACGTR	3 cut(s)	64, 187, 306
BstC8I	GCNNGC	1 cut(s)	212
BstENI	CCTNNNNNAGG	1 cut(s)	215
BstFNI	CGCG	2 cut(s)	152, 282
BstHHI	GCGC	4 cut(s)	154, 184, 282, 324
BstKTI	GATC	3 cut(s)	35, 255, 264
BstMAI	GTCTC	2 cut(s)	121, 164
BstMBI	GATC	3 cut(s)	32, 252, 261
BstMCI	CGRYCG	2 cut(s)	28, 35
BstMWI	GCNNNNNNNGC	6 cut(s)	36, 143, 181, 211, 330, 352
BstNI	CCWGG	2 cut(s)	100, 386
BstSCI	CCNGG	4 cut(s)	98, 205, 312, 384
BstSFI	CTRYAG	1 cut(s)	331
BstSLI	GKGCMC	1 cut(s)	426
BstUI	CGCG	2 cut(s)	152, 282
BstV1I	GCAGC	4 cut(s)	317, 336, 339, 342
BstV2I	GAAGAC	1 cut(s)	302
BstX2I	RGATCY	1 cut(s)	252
BstYI	RGATCY	1 cut(s)	252
BstZI	CGGCCG	1 cut(s)	25
BsuRI	GGCC	5 cut(s)	27, 103, 197, 210, 437
BtgZI	GCGATG	2 cut(s)	297, 407
BtrI	CACGTC	1 cut(s)	202
BtsIMutI	CAGTG	2 cut(s)	89, 417
BveI	ACCTGC	2 cut(s)	324, 370
Cac8I	GCNNGC	1 cut(s)	212
CaiI	CAGNNNCTG	1 cut(s)	330
CfoI	GCGC	4 cut(s)	154, 184, 282, 324
Cfr13I	GGNCC	5 cut(s)	70, 94, 102, 208, 382
CseI	GACGC	3 cut(s)	126, 181, 394
CviJI	RGCY	8 cut(s)	27, 39, 103, 197, 210, 330, 355, 437
CviKI_1	RGCY	8 cut(s)	27, 39, 103, 197, 210, 330, 355, 437
DpnI	GATC	3 cut(s)	34, 254, 263
DpnII	GATC	3 cut(s)	32, 252, 261
DraIII	CACNNNGTG	1 cut(s)	316
EaeI	YGGCCR	1 cut(s)	25
EagI	CGGCCG	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
EclXI	CGGCCG	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	426
Eco24I	GRGCYC	1 cut(s)	41
Eco47I	GGWCC	3 cut(s)	70, 94, 382
Eco52I	CGGCCG	1 cut(s)	25
Eco72I	CACGTG	3 cut(s)	64, 187, 306
EcoNI	CCTNNNNNAGG	1 cut(s)	215
EcoRII	CCWGG	2 cut(s)	98, 384
EcoT14I	CCWWGG	1 cut(s)	426
EcoT38I	GRGCYC	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	426
Esp3I	CGTCTC	2 cut(s)	121, 164
FaqI	GGGAC	1 cut(s)	83
Fnu4HI	GCNGC	6 cut(s)	28, 325, 328, 331, 356, 390
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	6 cut(s)	28, 325, 328, 331, 356, 390
GlaI	GCGC	4 cut(s)	153, 183, 281, 323
GluI	GCNGC	6 cut(s)	28, 325, 328, 331, 356, 390
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	5 cut(s)	27, 103, 197, 210, 437
HapII	CCGG	4 cut(s)	206, 313, 352, 359
HgaI	GACGC	3 cut(s)	126, 181, 394
HhaI	GCGC	4 cut(s)	154, 184, 282, 324
Hin1I	GRCGYC	3 cut(s)	137, 173, 405
Hin6I	GCGC	4 cut(s)	152, 182, 280, 322
HinP1I	GCGC	4 cut(s)	152, 182, 280, 322
HinfI	GANTC	1 cut(s)	10
HpaII	CCGG	4 cut(s)	206, 313, 352, 359
HphI	GGTGA	1 cut(s)	403
Hpy166II	GTNNAC	1 cut(s)	339
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	2 cut(s)	259, 340
Hpy8I	GTNNAC	1 cut(s)	339
Hpy99I	CGWCG	4 cut(s)	124, 142, 181, 203
HpyAV	CCTTC	3 cut(s)	115, 160, 436
HpyCH4III	ACNGT	2 cut(s)	415, 421
HpyCH4IV	ACGT	4 cut(s)	63, 186, 201, 305
HpyCH4V	TGCA	1 cut(s)	333
HpyF10VI	GCNNNNNNNGC	6 cut(s)	36, 143, 181, 211, 330, 352
HpySE526I	ACGT	4 cut(s)	63, 186, 201, 305
Hsp92I	GRCGYC	3 cut(s)	137, 173, 405
HspAI	GCGC	4 cut(s)	152, 182, 280, 322
Kzo9I	GATC	3 cut(s)	32, 252, 261
LmnI	GCTCC	3 cut(s)	116, 319, 376
Lsp1109I	GCAGC	4 cut(s)	317, 336, 339, 342
MaeII	ACGT	4 cut(s)	63, 186, 201, 305
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	3 cut(s)	34, 254, 263
MbiI	CCGCTC	2 cut(s)	111, 274
MboI	GATC	3 cut(s)	32, 252, 261
MboII	GAAGA	2 cut(s)	50, 307
MfeI	CAATTG	1 cut(s)	459
MflI	RGATCY	1 cut(s)	252
MhlI	GDGCHC	2 cut(s)	41, 426
MluCI	AATT	1 cut(s)	459
MnlI	CCTC	9 cut(s)	217, 229, 235, 266, 283, 336, 419, 424, 427
MseI	TTAA	1 cut(s)	475
MspA1I	CMGCKG	2 cut(s)	267, 330
MspI	CCGG	4 cut(s)	206, 313, 352, 359
MspR9I	CCNGG	4 cut(s)	100, 207, 314, 386
MunI	CAATTG	1 cut(s)	459
Mva1269I	GAATGC	1 cut(s)	370
MvaI	CCWGG	2 cut(s)	100, 386
MvnI	CGCG	2 cut(s)	152, 282
MwoI	GCNNNNNNNGC	6 cut(s)	36, 143, 181, 211, 330, 352
NciI	CCSGG	2 cut(s)	207, 314
NdeII	GATC	3 cut(s)	32, 252, 261
NlaIV	GGNNCC	4 cut(s)	71, 96, 311, 350
NmuCI	GTSAC	1 cut(s)	415
PcsI	WCGNNNNNNNCGW	2 cut(s)	47, 156
PctI	GAATGC	1 cut(s)	370
PfeI	GAWTC	1 cut(s)	10
PflFI	GACNNNGTC	1 cut(s)	224
PflMI	CCANNNNNTGG	1 cut(s)	91
PkrI	GCNGC	6 cut(s)	29, 326, 329, 332, 357, 391
Ple19I	CGATCG	1 cut(s)	35
PmaCI	CACGTG	3 cut(s)	64, 187, 306
PmlI	CACGTG	3 cut(s)	64, 187, 306
Ppu21I	YACGTR	3 cut(s)	64, 187, 306
Psp6I	CCWGG	2 cut(s)	98, 384
PspCI	CACGTG	3 cut(s)	64, 187, 306
PspGI	CCWGG	2 cut(s)	98, 384
PspN4I	GGNNCC	4 cut(s)	71, 96, 311, 350
PspPI	GGNCC	5 cut(s)	70, 94, 102, 208, 382
PstI	CTGCAG	1 cut(s)	335
PstNI	CAGNNNCTG	1 cut(s)	330
PsuI	RGATCY	1 cut(s)	252
PsyI	GACNNNGTC	1 cut(s)	224
PvuI	CGATCG	1 cut(s)	35
PvuII	CAGCTG	1 cut(s)	330
SaqAI	TTAA	1 cut(s)	475
SatI	GCNGC	6 cut(s)	28, 325, 328, 331, 356, 390
Sau3AI	GATC	3 cut(s)	32, 252, 261
Sau96I	GGNCC	5 cut(s)	70, 94, 102, 208, 382
ScrFI	CCNGG	4 cut(s)	100, 207, 314, 386
SduI	GDGCHC	2 cut(s)	41, 426
SfcI	CTRYAG	1 cut(s)	331
SinI	GGWCC	3 cut(s)	70, 94, 382
Sse9I	AATT	1 cut(s)	459
SsiI	CCGC	6 cut(s)	28, 109, 267, 274, 346, 389
StyD4I	CCNGG	4 cut(s)	98, 205, 312, 384
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	2 cut(s)	415, 421
TaiI	ACGT	4 cut(s)	66, 189, 204, 308
TaqI	TCGA	3 cut(s)	45, 159, 447
TaqII	GACCGA	1 cut(s)	314
TasI	AATT	1 cut(s)	459
TauI	GCSGC	2 cut(s)	30, 392
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	1 cut(s)	475
Tru9I	TTAA	1 cut(s)	475
TscAI	CASTG	2 cut(s)	96, 424
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	4 cut(s)	324, 327, 330, 355
Tsp45I	GTSAC	1 cut(s)	415
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	2 cut(s)	96, 424
Tth111I	GACNNNGTC	1 cut(s)	224
Van91I	CCANNNNNTGG	1 cut(s)	91
VpaK11BI	GGWCC	3 cut(s)	70, 94, 382
XagI	CCTNNNNNAGG	1 cut(s)	215
XcmI	CCANNNNNNNNNTGG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.