Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0013268

Physical Location & Seq

Genomic Coordinates Forward (+)

5510960 .. 5514746

Gene Structure 3787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00283610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCATTCAAGGACACGGGGGTACGTTTAGTGAGTTTTCTGGTTTCCTTAGATTTGATTGGGAAGTCTTGTCCGGTGTTCCAATCGGTCTCCAAGCTTGTGGGCTGGCATGCCGAGTCCACTAACCCGAAGATGGCAGAGAGATTCGAGCAGTGGGAGGTTTCGTCTGGCCTTTGCCGAAAGGCTTTTCGGACTGGCCCGTTCCTTTGGGCCGGATTCAATGCAATTAGCCGAAGCTATGGATCAACGCCAACTCTTCGGTTCTTGGCTGTTCTTGCTAATGCTGGTGAGATGATATACTTGAAGAACGAGAATTTTCTTTGGTTTTTAAGTATTGGGACTTTGGACTCAATTTTTGCTAGAAAGATGAGCTTGGTTTGGGTATTTGGTGAGTCCTTTGGGTACATTTTCTTCATTATATCTGATTTTTTGGCGCTAAAATATGGGCTTGAGGAATCTAGAAAGGTTCTGAGTTTGGAGTACAAGTCCATTGAGCAGAAGAATGCTCGCATAAGAATGATTAGAAGTGACAGAGTGATGAGGTTTATGGCTGTAGCAGCTACTGTTGCAGACTTGCTTATTGCAATTGCTGATATCGAGCCTAATCCATTCTGCAATCACATTGTGACTCTTGGGATTAGTTCATTGGTCTCTGCTTGGTCCGGTTGGTCCAGAAATTGTGAGCCCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0006996 GO:0007031 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016559 GO:0031090 GO:0031903 GO:0032535 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044375 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

PEX11

Protein Analysis

230

Amino Acids

25.9

Weight (kDa)

9.1

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEX11	PF05648	9 - 225	1.8e-32	Peroxisomal biogenesis factor 11 (PEX11)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47430
fragaria_vesca	FvH4_7g27470
malus_domestica	MD01G1182600.v1.1 MD07G1253300.v1.1
prunus_persica	Prupe.2G276800_v2.0.a1
pyrus_communis	pycom01g19280
rosa_chinensis	RchiOBHm_Chr1g0374261
rosa_laevigata	RLG00000026748
rosa_multiflora	Rmu_co8391081.1_g000001 Rmu_sc0039395.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283610
rosa_rugosa	Rorug01G0382400
rosa_samantha	Rh1AG393100 Rh1BG357300 Rh1CG370300 Rh1DG387700
rosa_wichuraiana	Rw1G034060 Rw1G034280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	313
AdeI	CACNNNGTG	1 cut(s)	625
AfaI	GTAC	3 cut(s)	24, 404, 482
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	3 cut(s)	10, 220, 304
AluBI	AGCT	4 cut(s)	97, 237, 372, 560
AluI	AGCT	4 cut(s)	97, 237, 372, 560
Alw26I	GTCTC	2 cut(s)	94, 655
AlwI	GGATC	1 cut(s)	250
AlwNI	CAGNNNCTG	1 cut(s)	563
AoxI	GGCC	3 cut(s)	169, 196, 210
ApeKI	GCWGC	1 cut(s)	557
ApoI	RAATTY	1 cut(s)	313
ArsI	GACNNNNNNTTYG	2 cut(s)	338, 370
AspLEI	GCGC	1 cut(s)	436
AspS9I	GGNCC	4 cut(s)	197, 210, 660, 669
AsuHPI	GGTGA	2 cut(s)	299, 401
AvaII	GGWCC	2 cut(s)	660, 669
BanII	GRGCYC	1 cut(s)	687
BarI	GAAGNNNNNNTAC	2 cut(s)	395, 427
BbvI	GCAGC	1 cut(s)	569
BccI	CCATC	1 cut(s)	127
BcoDI	GTCTC	2 cut(s)	94, 655
BfaI	CTAG	2 cut(s)	360, 459
BfmI	CTRYAG	1 cut(s)	552
BfoI	RGCGCY	1 cut(s)	437
BisI	GCNGC	1 cut(s)	558
BlsI	GCNGC	1 cut(s)	559
Bme18I	GGWCC	2 cut(s)	660, 669
BmgT120I	GGNCC	4 cut(s)	197, 210, 660, 669
BpuEI	CTTGAG	1 cut(s)	470
BsaI	GGTCTC	2 cut(s)	94, 655
BsaWI	WCCGGW	2 cut(s)	73, 662
BsaXI	ACNNNNNCTCC	4 cut(s)	149, 179, 470, 500
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	199
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	1 cut(s)	461
BseNI	ACTGG	1 cut(s)	199
BseXI	GCAGC	1 cut(s)	569
BshFI	GGCC	3 cut(s)	171, 198, 212
BsiSI	CCGG	3 cut(s)	74, 213, 663
BslFI	GGGAC	1 cut(s)	352
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	2 cut(s)	94, 655
BsmFI	GGGAC	1 cut(s)	352
BsmI	GAATGC	2 cut(s)	5, 508
BsnI	GGCC	3 cut(s)	171, 198, 212
Bso31I	GGTCTC	2 cut(s)	94, 655
Bsp1286I	GDGCHC	1 cut(s)	687
Bsp143I	GATC	1 cut(s)	242
BspANI	GGCC	3 cut(s)	171, 198, 212
BspCNI	CTCAG	1 cut(s)	462
BspPI	GGATC	1 cut(s)	250
BspTNI	GGTCTC	2 cut(s)	94, 655
BsrI	ACTGG	1 cut(s)	199
BssMI	GATC	1 cut(s)	242
Bst4CI	ACNGT	1 cut(s)	565
Bst6I	CTCTTC	1 cut(s)	261
BstC8I	GCNNGC	3 cut(s)	107, 111, 508
BstDEI	CTNAG	2 cut(s)	49, 470
BstH2I	RGCGCY	1 cut(s)	437
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	1 cut(s)	245
BstMAI	GTCTC	2 cut(s)	94, 655
BstMBI	GATC	1 cut(s)	242
BstMWI	GCNNNNNNNGC	3 cut(s)	275, 557, 566
BstNSI	RCATGY	1 cut(s)	113
BstSFI	CTRYAG	1 cut(s)	552
BstV1I	GCAGC	1 cut(s)	569
BstXI	CCANNNNNNTGG	1 cut(s)	100
BsuRI	GGCC	3 cut(s)	171, 198, 212
BtsI	GCAGTG	1 cut(s)	158
BtsIMutI	CAGTG	1 cut(s)	158
Cac8I	GCNNGC	3 cut(s)	107, 111, 508
CaiI	CAGNNNCTG	1 cut(s)	563
CfoI	GCGC	1 cut(s)	436
Cfr13I	GGNCC	4 cut(s)	197, 210, 660, 669
Csp6I	GTAC	3 cut(s)	23, 403, 481
CviAII	CATG	1 cut(s)	110
CviQI	GTAC	3 cut(s)	23, 403, 481
DdeI	CTNAG	2 cut(s)	49, 470
DpnI	GATC	1 cut(s)	244
DpnII	GATC	1 cut(s)	242
DraIII	CACNNNGTG	1 cut(s)	625
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Eco24I	GRGCYC	1 cut(s)	687
Eco31I	GGTCTC	2 cut(s)	94, 655
Eco32I	GATATC	1 cut(s)	595
Eco47I	GGWCC	2 cut(s)	660, 669
EcoRV	GATATC	1 cut(s)	595
EcoT38I	GRGCYC	1 cut(s)	687
FaeI	CATG	1 cut(s)	113
FaiI	YATR	8 cut(s)	111, 240, 298, 419, 444, 512, 548, 691
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FaqI	GGGAC	1 cut(s)	352
FatI	CATG	1 cut(s)	109
Fnu4HI	GCNGC	1 cut(s)	558
FriOI	GRGCYC	1 cut(s)	687
Fsp4HI	GCNGC	1 cut(s)	558
FspBI	CTAG	2 cut(s)	360, 459
GlaI	GCGC	1 cut(s)	435
GluI	GCNGC	1 cut(s)	558
HaeII	RGCGCY	1 cut(s)	437
HaeIII	GGCC	3 cut(s)	171, 198, 212
HapII	CCGG	3 cut(s)	74, 213, 663
HhaI	GCGC	1 cut(s)	436
Hin1II	CATG	1 cut(s)	113
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	7 cut(s)	116, 144, 216, 347, 392, 455, 628
HpaII	CCGG	3 cut(s)	74, 213, 663
HphI	GGTGA	2 cut(s)	299, 401
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	3 cut(s)	192, 424, 471
Hpy188III	TCNNGA	2 cut(s)	459, 672
Hpy8I	GTNNAC	1 cut(s)	120
HpyCH4III	ACNGT	1 cut(s)	565
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	4 cut(s)	224, 569, 584, 615
HpyF10VI	GCNNNNNNNGC	3 cut(s)	275, 557, 566
HpyF3I	CTNAG	2 cut(s)	49, 470
HpySE526I	ACGT	1 cut(s)	25
Hsp92II	CATG	1 cut(s)	113
HspAI	GCGC	1 cut(s)	434
Kzo9I	GATC	1 cut(s)	242
LpnPI	CCDG	9 cut(s)	26, 87, 91, 153, 180, 226, 270, 676, 685
Lsp1109I	GCAGC	1 cut(s)	569
MaeI	CTAG	2 cut(s)	360, 459
MaeII	ACGT	1 cut(s)	25
MaeIII	GTNAC	2 cut(s)	527, 625
MalI	GATC	1 cut(s)	244
MboI	GATC	1 cut(s)	242
MboII	GAAGA	5 cut(s)	142, 248, 316, 403, 511
MfeI	CAATTG	1 cut(s)	585
MhlI	GDGCHC	1 cut(s)	687
MluCI	AATT	5 cut(s)	225, 313, 351, 585, 676
MlyI	GAGTC	4 cut(s)	125, 341, 401, 622
MnlI	CCTC	3 cut(s)	151, 445, 534
MseI	TTAA	1 cut(s)	329
MslI	CAYNNNNRTG	1 cut(s)	515
MspI	CCGG	3 cut(s)	74, 213, 663
MunI	CAATTG	1 cut(s)	585
Mva1269I	GAATGC	2 cut(s)	5, 508
MwoI	GCNNNNNNNGC	3 cut(s)	275, 557, 566
NdeII	GATC	1 cut(s)	242
NlaIII	CATG	1 cut(s)	113
NmeAIII	GCCGAG	1 cut(s)	139
NmuCI	GTSAC	2 cut(s)	527, 625
NspI	RCATGY	1 cut(s)	113
PaeI	GCATGC	1 cut(s)	113
PctI	GAATGC	2 cut(s)	5, 508
PfeI	GAWTC	3 cut(s)	144, 216, 455
PkrI	GCNGC	1 cut(s)	559
PleI	GAGTC	4 cut(s)	124, 341, 400, 622
PpsI	GAGTC	4 cut(s)	124, 341, 400, 622
PspPI	GGNCC	4 cut(s)	197, 210, 660, 669
PstNI	CAGNNNCTG	1 cut(s)	563
RsaI	GTAC	3 cut(s)	24, 404, 482
RsaNI	GTAC	3 cut(s)	23, 403, 481
RseI	CAYNNNNRTG	1 cut(s)	515
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	1 cut(s)	558
Sau3AI	GATC	1 cut(s)	242
Sau96I	GGNCC	4 cut(s)	197, 210, 660, 669
SchI	GAGTC	4 cut(s)	125, 341, 401, 622
SduI	GDGCHC	1 cut(s)	687
SetI	ASST	8 cut(s)	28, 99, 162, 239, 374, 468, 545, 562
SfcI	CTRYAG	1 cut(s)	552
SinI	GGWCC	2 cut(s)	660, 669
SmiMI	CAYNNNNRTG	1 cut(s)	515
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
SphI	GCATGC	1 cut(s)	113
Sse9I	AATT	5 cut(s)	225, 313, 351, 585, 676
SspMI	CTAG	2 cut(s)	360, 459
TaaI	ACNGT	1 cut(s)	565
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	2 cut(s)	147, 597
TaqII	GACCGA	1 cut(s)	76
TasI	AATT	5 cut(s)	225, 313, 351, 585, 676
TatI	WGTACW	1 cut(s)	480
TfiI	GAWTC	3 cut(s)	144, 216, 455
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TscAI	CASTG	1 cut(s)	158
TseFI	GTSAC	2 cut(s)	527, 625
TseI	GCWGC	1 cut(s)	557
Tsp45I	GTSAC	2 cut(s)	527, 625
TspDTI	ATGAA	2 cut(s)	403, 633
TspRI	CASTG	1 cut(s)	158
VpaK11BI	GGWCC	2 cut(s)	660, 669
XapI	RAATTY	1 cut(s)	313
XbaI	TCTAGA	1 cut(s)	458
XceI	RCATGY	1 cut(s)	113
XspI	CTAG	2 cut(s)	360, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.