Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005496

Physical Location & Seq

Genomic Coordinates Forward (+)

17498148 .. 17501006

Gene Structure 2859 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G47490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGATTGGCCTACGACGACTCTCATCTCCCGAAGAATCTGTAATCTTTTGATTTTCTTCGTCAAATTAAACCACAAAAACCTCTCCATCGATTCGGATAATCCACAACACTCTGCGATGAAACCCGACCCGACCAGACGCAGAAACAGAGCCTTATCTTCTTCTTCTCCATCAAAGACCCGACCCGAACTATCTTCCGGGTCTCCCAACCGGAATACCGGTGAAGCCCGTGGTGGAAAGGTGAAAACTTCGGCCACTTTACTCGACCGGGAGGAGATGGGTCTTTTTCCCGGGTCGGGTTACGGTGACCCGAATCCAGAACCTAGGAGCTTTCCTTATAGTGTGAAGCAGCAATGTTGGGAAAAAGCAGAGAAGATTAAAGGAAGAGATCCTGAGCGTTGGAGGAGAGATCATTTAGGGAACATTGTGTTTAGGAAGCTTGTTGGTTGTCCTGGATGCTTGTGTCATGATTATGATCACATTGTTCCTTACTCCAAGGGCGGCAAGAGCACTCTGGAAAACTGTCAGGTTTTGCAGGCAAAGGTAAACCGATCAAAGGGTAATAAAACCGATATTTCTCGATCCGAGCTTATCCAAAGGAGTTCTTACTGTCGAGTCGCTGGCCGAGATATGGATCTGATTGAGCTAACAGCTTACGGGAATGTACAGCGTGCACCTACGTCTAGCGGATGCAGAATTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HNH

Protein Analysis

234

Amino Acids

26.28

Weight (kDa)

9.69

Isoelectric Point (pI)

58.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47490 AT3G47490 AT3G47490 AT3G47490 AT3G47490 AT3G47490 AT3G47490
fragaria_vesca	FvH4_5g14820 FvH4_5g14820 FvH4_5g14820 FvH4_5g14820 FvH4_5g14820 FvH4_5g14820 FvH4_5g14820 FvH4_5g14820
malus_domestica	MD06G1194600.v1.1
prunus_persica	Prupe.5G194700_v2.0.a1
pyrus_communis	pycom06g17230
rosa_chinensis	RchiOBHm_Chr7g0181571
rosa_laevigata	RLG00000005182
rosa_multiflora	Rmu_sc0000988.1_g000021
rosa_roxburghii	Rroxscaffold_3G00271890
rosa_rugosa	Rorug06G0442300 Rorug06G0442400
rosa_samantha	Rh7AG044500 Rh7BG043500 Rh7CG045300 Rh7DG044100
rosa_wichuraiana	Rw7G003690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	501, 687
AclWI	GGATC	3 cut(s)	383, 576, 642
AcoI	YGGCCR	2 cut(s)	252, 622
AcsI	RAATTY	1 cut(s)	696
AfaI	GTAC	1 cut(s)	666
AfiI	CCNNNNNNNGG	3 cut(s)	296, 556, 631
AgeI	ACCGGT	1 cut(s)	218
AjnI	CCWGG	1 cut(s)	451
AluBI	AGCT	5 cut(s)	330, 439, 589, 646, 653
AluI	AGCT	5 cut(s)	330, 439, 589, 646, 653
Alw21I	GWGCWC	2 cut(s)	512, 676
Alw26I	GTCTC	1 cut(s)	207
Alw44I	GTGCAC	1 cut(s)	672
AlwI	GGATC	3 cut(s)	383, 576, 642
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	3 cut(s)	8, 252, 622
ApaLI	GTGCAC	1 cut(s)	672
ApeKI	GCWGC	1 cut(s)	349
ApoI	RAATTY	1 cut(s)	696
AsiGI	ACCGGT	1 cut(s)	218
AspA2I	CCTAGG	1 cut(s)	323
AsuC2I	CCSGG	4 cut(s)	199, 269, 291, 292
AsuHPI	GGTGA	3 cut(s)	233, 253, 317
AvaI	CYCGRG	1 cut(s)	290
AvrII	CCTAGG	1 cut(s)	323
BaeGI	GKGCMC	1 cut(s)	676
Bbv12I	GWGCWC	2 cut(s)	512, 676
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	3 cut(s)	95, 178, 271
BciT130I	CCWGG	1 cut(s)	453
BclI	TGATCA	1 cut(s)	475
BcnI	CCSGG	4 cut(s)	199, 269, 291, 292
BcoDI	GTCTC	1 cut(s)	207
BfaI	CTAG	2 cut(s)	324, 684
BisI	GCNGC	2 cut(s)	350, 502
BlnI	CCTAGG	1 cut(s)	323
BlsI	GCNGC	2 cut(s)	351, 503
Bme1390I	CCNGG	5 cut(s)	199, 269, 291, 292, 453
BmeT110I	CYCGRG	1 cut(s)	290
BmrFI	CCNGG	5 cut(s)	199, 269, 291, 292, 453
BmsI	GCATC	2 cut(s)	446, 680
Bpu10I	CCTNAGC	1 cut(s)	393
BpuMI	CCSGG	4 cut(s)	199, 269, 291, 292
Bsa29I	ATCGAT	1 cut(s)	90
BsaBI	GATNNNNATC	2 cut(s)	474, 633
BsaI	GGTCTC	1 cut(s)	207
BsaJI	CCNNGG	4 cut(s)	229, 290, 323, 495
BsaWI	WCCGGW	2 cut(s)	210, 218
Bsc4I	CCNNNNNNNGG	3 cut(s)	296, 556, 631
Bse118I	RCCGGY	1 cut(s)	218
Bse3DI	GCAATG	1 cut(s)	359
Bse8I	GATNNNNATC	2 cut(s)	474, 633
BseBI	CCWGG	1 cut(s)	453
BseCI	ATCGAT	1 cut(s)	90
BseDI	CCNNGG	4 cut(s)	229, 290, 323, 495
BseGI	GGATG	2 cut(s)	461, 695
BseJI	GATNNNNATC	2 cut(s)	474, 633
BseLI	CCNNNNNNNGG	3 cut(s)	296, 556, 631
BseMI	GCAATG	1 cut(s)	359
BseMII	CTCAG	1 cut(s)	384
BseRI	GAGGAG	2 cut(s)	287, 418
BseSI	GKGCMC	1 cut(s)	676
BseXI	GCAGC	1 cut(s)	361
Bsh1285I	CGRYCG	1 cut(s)	268
BshFI	GGCC	3 cut(s)	10, 254, 624
BshTI	ACCGGT	1 cut(s)	218
BshVI	ATCGAT	1 cut(s)	90
BsiEI	CGRYCG	1 cut(s)	268
BsiHKAI	GWGCWC	2 cut(s)	512, 676
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	5 cut(s)	198, 211, 219, 268, 291
BslI	CCNNNNNNNGG	3 cut(s)	296, 556, 631
BsmAI	GTCTC	1 cut(s)	207
BsnI	GGCC	3 cut(s)	10, 254, 624
Bso31I	GGTCTC	1 cut(s)	207
BsoBI	CYCGRG	1 cut(s)	290
Bsp1286I	GDGCHC	2 cut(s)	512, 676
Bsp1407I	TGTACA	1 cut(s)	664
Bsp143I	GATC	6 cut(s)	388, 409, 475, 551, 581, 634
BspACI	CCGC	2 cut(s)	501, 687
BspANI	GGCC	3 cut(s)	10, 254, 624
BspCNI	CTCAG	1 cut(s)	385
BspDI	ATCGAT	1 cut(s)	90
BspHI	TCATGA	1 cut(s)	466
BspPI	GGATC	3 cut(s)	383, 576, 642
BspTNI	GGTCTC	1 cut(s)	207
BsrDI	GCAATG	1 cut(s)	359
BsrFI	RCCGGY	1 cut(s)	218
BsrGI	TGTACA	1 cut(s)	664
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	4 cut(s)	229, 290, 323, 495
BssMI	GATC	6 cut(s)	388, 409, 475, 551, 581, 634
BssT1I	CCWWGG	2 cut(s)	323, 495
Bst2UI	CCWGG	1 cut(s)	453
Bst4CI	ACNGT	3 cut(s)	305, 524, 611
Bst6I	CTCTTC	1 cut(s)	379
BstAUI	TGTACA	1 cut(s)	664
BstC8I	GCNNGC	3 cut(s)	537, 622, 672
BstDEI	CTNAG	1 cut(s)	393
BstDSI	CCRYGG	1 cut(s)	229
BstEII	GGTNACC	1 cut(s)	305
BstF5I	GGATG	2 cut(s)	461, 695
BstKTI	GATC	6 cut(s)	391, 412, 478, 554, 584, 637
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	6 cut(s)	388, 409, 475, 551, 581, 634
BstMCI	CGRYCG	1 cut(s)	268
BstMWI	GCNNNNNNNGC	1 cut(s)	507
BstNI	CCWGG	1 cut(s)	453
BstPI	GGTNACC	1 cut(s)	305
BstSCI	CCNGG	5 cut(s)	197, 267, 289, 290, 451
BstSLI	GKGCMC	1 cut(s)	676
BstV1I	GCAGC	1 cut(s)	361
BstX2I	RGATCY	2 cut(s)	388, 634
BstYI	RGATCY	2 cut(s)	388, 634
Bsu15I	ATCGAT	1 cut(s)	90
BsuRI	GGCC	3 cut(s)	10, 254, 624
BsuTUI	ATCGAT	1 cut(s)	90
BtgI	CCRYGG	1 cut(s)	229
BtgZI	GCGATG	1 cut(s)	131
BtsCI	GGATG	2 cut(s)	461, 695
Cac8I	GCNNGC	3 cut(s)	537, 622, 672
CciI	TCATGA	1 cut(s)	466
Cfr10I	RCCGGY	1 cut(s)	218
Cfr9I	CCCGGG	1 cut(s)	290
ClaI	ATCGAT	1 cut(s)	90
CseI	GACGC	1 cut(s)	147
Csp6I	GTAC	1 cut(s)	665
CspAI	ACCGGT	1 cut(s)	218
CviAII	CATG	1 cut(s)	467
CviQI	GTAC	1 cut(s)	665
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	6 cut(s)	390, 411, 477, 553, 583, 636
DpnII	GATC	6 cut(s)	388, 409, 475, 551, 581, 634
EaeI	YGGCCR	2 cut(s)	252, 622
Eam1104I	CTCTTC	1 cut(s)	379
EarI	CTCTTC	1 cut(s)	379
Eco130I	CCWWGG	2 cut(s)	323, 495
Eco31I	GGTCTC	1 cut(s)	207
Eco88I	CYCGRG	1 cut(s)	290
Eco91I	GGTNACC	1 cut(s)	305
EcoO65I	GGTNACC	1 cut(s)	305
EcoRI	GAATTC	1 cut(s)	696
EcoRII	CCWGG	1 cut(s)	451
EcoT14I	CCWWGG	2 cut(s)	323, 495
ErhI	CCWWGG	2 cut(s)	323, 495
FaeI	CATG	1 cut(s)	470
FaiI	YATR	4 cut(s)	339, 468, 474, 632
FalI	AAGNNNNNCTT	2 cut(s)	589, 621
FatI	CATG	1 cut(s)	466
FbaI	TGATCA	1 cut(s)	475
Fnu4HI	GCNGC	2 cut(s)	350, 502
FokI	GGATG	1 cut(s)	468
Fsp4HI	GCNGC	2 cut(s)	350, 502
FspBI	CTAG	2 cut(s)	324, 684
GluI	GCNGC	2 cut(s)	350, 502
HaeIII	GGCC	3 cut(s)	10, 254, 624
HapII	CCGG	5 cut(s)	198, 211, 219, 268, 291
HgaI	GACGC	1 cut(s)	147
Hin1II	CATG	1 cut(s)	470
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	5 cut(s)	19, 36, 92, 313, 615
HpaII	CCGG	5 cut(s)	198, 211, 219, 268, 291
HphI	GGTGA	3 cut(s)	233, 253, 317
Hpy166II	GTNNAC	2 cut(s)	547, 674
Hpy188I	TCNGA	3 cut(s)	97, 586, 639
Hpy188III	TCNNGA	6 cut(s)	30, 317, 392, 467, 515, 579
Hpy8I	GTNNAC	2 cut(s)	547, 674
Hpy99I	CGWCG	1 cut(s)	19
HpyCH4III	ACNGT	3 cut(s)	305, 524, 611
HpyCH4IV	ACGT	1 cut(s)	680
HpyCH4V	TGCA	3 cut(s)	535, 674, 693
HpyF10VI	GCNNNNNNNGC	1 cut(s)	507
HpyF3I	CTNAG	1 cut(s)	393
HpySE526I	ACGT	1 cut(s)	680
Hsp92II	CATG	1 cut(s)	470
Ksp22I	TGATCA	1 cut(s)	475
Kzo9I	GATC	6 cut(s)	388, 409, 475, 551, 581, 634
LmnI	GCTCC	1 cut(s)	327
Lsp1109I	GCAGC	1 cut(s)	361
LweI	GCATC	2 cut(s)	446, 680
MaeI	CTAG	2 cut(s)	324, 684
MaeII	ACGT	1 cut(s)	680
MaeIII	GTNAC	2 cut(s)	299, 305
MalI	GATC	6 cut(s)	390, 411, 477, 553, 583, 636
MboI	GATC	6 cut(s)	388, 409, 475, 551, 581, 634
MboII	GAAGA	8 cut(s)	45, 49, 150, 153, 156, 186, 385, 396
MflI	RGATCY	2 cut(s)	388, 634
MhlI	GDGCHC	2 cut(s)	512, 676
MluCI	AATT	2 cut(s)	65, 696
MlyI	GAGTC	2 cut(s)	13, 624
MmeI	TCCRAC	1 cut(s)	380
MnlI	CCTC	3 cut(s)	92, 265, 396
MseI	TTAA	2 cut(s)	68, 378
MslI	CAYNNNNRTG	1 cut(s)	471
MspI	CCGG	5 cut(s)	198, 211, 219, 268, 291
MspR9I	CCNGG	5 cut(s)	199, 269, 291, 292, 453
MvaI	CCWGG	1 cut(s)	453
MwoI	GCNNNNNNNGC	1 cut(s)	507
NciI	CCSGG	4 cut(s)	199, 269, 291, 292
NdeII	GATC	6 cut(s)	388, 409, 475, 551, 581, 634
NlaIII	CATG	1 cut(s)	470
NmeAIII	GCCGAG	1 cut(s)	650
NmuCI	GTSAC	1 cut(s)	305
PagI	TCATGA	1 cut(s)	466
PfeI	GAWTC	3 cut(s)	36, 92, 313
PfoI	TCCNGGA	1 cut(s)	451
PinAI	ACCGGT	1 cut(s)	218
PkrI	GCNGC	2 cut(s)	351, 503
PleI	GAGTC	2 cut(s)	13, 623
PpsI	GAGTC	2 cut(s)	13, 623
Psp6I	CCWGG	1 cut(s)	451
PspEI	GGTNACC	1 cut(s)	305
PspGI	CCWGG	1 cut(s)	451
PsuI	RGATCY	2 cut(s)	388, 634
RsaI	GTAC	1 cut(s)	666
RsaNI	GTAC	1 cut(s)	665
RseI	CAYNNNNRTG	1 cut(s)	471
SaqAI	TTAA	2 cut(s)	68, 378
SatI	GCNGC	2 cut(s)	350, 502
Sau3AI	GATC	6 cut(s)	388, 409, 475, 551, 581, 634
SchI	GAGTC	2 cut(s)	13, 624
ScrFI	CCNGG	5 cut(s)	199, 269, 291, 292, 453
SduI	GDGCHC	2 cut(s)	512, 676
SfaNI	GCATC	2 cut(s)	446, 680
SmaI	CCCGGG	1 cut(s)	292
SmiMI	CAYNNNNRTG	1 cut(s)	471
Sse9I	AATT	2 cut(s)	65, 696
SsiI	CCGC	2 cut(s)	501, 687
SspMI	CTAG	2 cut(s)	324, 684
StyD4I	CCNGG	5 cut(s)	197, 267, 289, 290, 451
StyI	CCWWGG	2 cut(s)	323, 495
TaaI	ACNGT	3 cut(s)	305, 524, 611
TaiI	ACGT	1 cut(s)	683
TaqI	TCGA	4 cut(s)	90, 264, 580, 613
TasI	AATT	2 cut(s)	65, 696
TatI	WGTACW	1 cut(s)	664
TauI	GCSGC	1 cut(s)	504
TfiI	GAWTC	3 cut(s)	36, 92, 313
Tru1I	TTAA	2 cut(s)	68, 378
Tru9I	TTAA	2 cut(s)	68, 378
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	1 cut(s)	349
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	1 cut(s)	134
TspMI	CCCGGG	1 cut(s)	290
VneI	GTGCAC	1 cut(s)	672
XapI	RAATTY	1 cut(s)	696
XmaI	CCCGGG	1 cut(s)	290
XmaJI	CCTAGG	1 cut(s)	323
XspI	CTAG	2 cut(s)	324, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.