Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0005496

Physical Location & Seq

Genomic Coordinates Reverse (-)

3004006 .. 3006471

Gene Structure 2466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G003690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAGGCCAGCAAGCAAAGAACCAAAGCGGCGTAGCCGGCCTTCATCTCCGTTAAGGGACCGAAACCCAACCTCGCCGCCCAGGTCTCGTTTCTCACCACCACGAGTCTCTCTTCTCGATGACGTCACCGACGACTTCGCTAACAACCCACGAAGCTTCCCGCACAGCGTGAAGAAACAATGCTGGGAGAAGGCGGAGAAGATCAAAGGGCGGGACCCAGATCGCTGGAGGCGGGACCCGCTCGGGAACACGGTGTTCCGGAAGCTCGTCGGCTGCCCCGGTTGCTTATGTCATGATTACGATCACATTGTGCCTTACTCTAAGGGTGGAGAAAGTTCGCTTGAAAATTGTCAGGTTTTACAGGCAAAAGTGAACAGATCAAAAGGAAATCGAACAGAGTATTCTAGAGCTGAGCTCATTCAGAAAAGTTCTTACTGTCGGGTTTCAGGTCGTGATATGGATCTAATTGAACTGTCAGCCTATGGAAATGTCCGTCCTGCACGAGAAGATTCATACTGTCCGGTTCCAGGTCGCGGTGTTGATCTGATTGACTTGTCAGCCAAAGGCAACATCCGCAATGCACAAGAGTTTTGGGGATGTACAATCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HNH

Protein Analysis

203

Amino Acids

23.05

Weight (kDa)

9.52

Isoelectric Point (pI)

64.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47490 AT3G47490 AT3G47490 AT3G47490 AT3G47490 AT3G47490 AT3G47490
fragaria_vesca	FvH4_5g14820 FvH4_5g14820 FvH4_5g14820 FvH4_5g14820 FvH4_5g14820 FvH4_5g14820 FvH4_5g14820 FvH4_5g14820
malus_domestica	MD06G1194600.v1.1
prunus_persica	Prupe.5G194700_v2.0.a1
pyrus_communis	pycom06g17230
rosa_chinensis	RchiOBHm_Chr7g0181571
rosa_laevigata	RLG00000005182
rosa_multiflora	Rmu_sc0000988.1_g000021
rosa_roxburghii	Rroxscaffold_3G00271890
rosa_rugosa	Rorug06G0442300 Rorug06G0442400
rosa_samantha	Rh7AG044500 Rh7BG043500 Rh7CG045300 Rh7DG044100
rosa_wichuraiana	Rw7G003690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	126
AccBSI	CCGCTC	1 cut(s)	241
AccII	CGCG	1 cut(s)	534
AccIII	TCCGGA	1 cut(s)	258
AciI	CCGC	9 cut(s)	28, 77, 161, 194, 211, 232, 239, 534, 574
AclWI	GGATC	1 cut(s)	468
AcyI	GRCGYC	1 cut(s)	123
AdeI	CACNNNGTG	2 cut(s)	169, 310
AfaI	GTAC	1 cut(s)	601
AfiI	CCNNNNNNNGG	2 cut(s)	527, 533
AgsI	TTSAA	2 cut(s)	344, 470
AjnI	CCWGG	2 cut(s)	80, 526
AluBI	AGCT	4 cut(s)	156, 265, 410, 415
AluI	AGCT	4 cut(s)	156, 265, 410, 415
Alw21I	GWGCWC	1 cut(s)	417
Alw26I	GTCTC	2 cut(s)	90, 112
AlwI	GGATC	1 cut(s)	468
Ama87I	CYCGRG	1 cut(s)	242
Aor13HI	TCCGGA	1 cut(s)	258
AoxI	GGCC	2 cut(s)	5, 38
ApeKI	GCWGC	1 cut(s)	273
AspS9I	GGNCC	3 cut(s)	58, 214, 235
AsuC2I	CCSGG	1 cut(s)	279
AsuHPI	GGTGA	2 cut(s)	87, 118
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	3 cut(s)	58, 214, 235
BanII	GRGCYC	1 cut(s)	417
BarI	GAAGNNNNNNTAC	2 cut(s)	25, 57
BauI	CACGAG	2 cut(s)	102, 501
Bbv12I	GWGCWC	1 cut(s)	417
BbvI	GCAGC	1 cut(s)	260
BciT130I	CCWGG	2 cut(s)	82, 528
BcnI	CCSGG	1 cut(s)	279
BcoDI	GTCTC	2 cut(s)	90, 112
BfaI	CTAG	1 cut(s)	405
BisI	GCNGC	3 cut(s)	29, 77, 274
BlpI	GCTNAGC	1 cut(s)	411
BlsI	GCNGC	3 cut(s)	30, 78, 275
Bme1390I	CCNGG	3 cut(s)	82, 279, 528
Bme18I	GGWCC	3 cut(s)	58, 214, 235
BmeT110I	CYCGRG	1 cut(s)	242
BmgT120I	GGNCC	3 cut(s)	58, 214, 235
BmiI	GGNNCC	6 cut(s)	59, 215, 216, 236, 237, 525
BmrFI	CCNGG	3 cut(s)	82, 279, 528
BplI	GAGNNNNNCTC	2 cut(s)	399, 431
BpmI	CTGGAG	1 cut(s)	247
Bpu1102I	GCTNAGC	1 cut(s)	411
BpuMI	CCSGG	1 cut(s)	279
BsaBI	GATNNNNATC	2 cut(s)	300, 459
BsaHI	GRCGYC	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	80, 277
BsaWI	WCCGGW	2 cut(s)	258, 520
Bsc4I	CCNNNNNNNGG	2 cut(s)	527, 533
Bse118I	RCCGGY	1 cut(s)	36
Bse3DI	GCAATG	1 cut(s)	583
Bse8I	GATNNNNATC	2 cut(s)	300, 459
BseAI	TCCGGA	1 cut(s)	258
BseBI	CCWGG	2 cut(s)	82, 528
BseDI	CCNNGG	2 cut(s)	80, 277
BseGI	GGATG	2 cut(s)	570, 602
BseJI	GATNNNNATC	2 cut(s)	300, 459
BseLI	CCNNNNNNNGG	2 cut(s)	527, 533
BseMI	GCAATG	1 cut(s)	583
BseMII	CTCAG	1 cut(s)	402
BseXI	GCAGC	1 cut(s)	260
BseYI	CCCAGC	1 cut(s)	183
BsgI	GTGCAG	1 cut(s)	483
Bsh1236I	CGCG	1 cut(s)	534
BshFI	GGCC	2 cut(s)	7, 40
BsiHKAI	GWGCWC	1 cut(s)	417
BsiHKCI	CYCGRG	1 cut(s)	242
BsiSI	CCGG	4 cut(s)	37, 259, 279, 521
BslFI	GGGAC	3 cut(s)	71, 227, 248
BslI	CCNNNNNNNGG	2 cut(s)	527, 533
BsmAI	GTCTC	2 cut(s)	90, 112
BsmFI	GGGAC	3 cut(s)	71, 227, 248
BsnI	GGCC	2 cut(s)	7, 40
Bso31I	GGTCTC	1 cut(s)	90
BsoBI	CYCGRG	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	417
Bsp13I	TCCGGA	1 cut(s)	258
Bsp1407I	TGTACA	1 cut(s)	599
Bsp143I	GATC	6 cut(s)	201, 220, 301, 377, 460, 541
Bsp1720I	GCTNAGC	1 cut(s)	411
BspACI	CCGC	9 cut(s)	28, 77, 161, 194, 211, 232, 239, 534, 574
BspANI	GGCC	2 cut(s)	7, 40
BspCNI	CTCAG	1 cut(s)	403
BspEI	TCCGGA	1 cut(s)	258
BspFNI	CGCG	1 cut(s)	534
BspHI	TCATGA	1 cut(s)	292
BspLI	GGNNCC	6 cut(s)	59, 215, 216, 236, 237, 525
BspPI	GGATC	1 cut(s)	468
BspTNI	GGTCTC	1 cut(s)	90
BsrBI	CCGCTC	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	583
BsrFI	RCCGGY	1 cut(s)	36
BsrGI	TGTACA	1 cut(s)	599
BssAI	RCCGGY	1 cut(s)	36
BssECI	CCNNGG	2 cut(s)	80, 277
BssMI	GATC	6 cut(s)	201, 220, 301, 377, 460, 541
BssNI	GRCGYC	1 cut(s)	123
BssSI	CACGAG	2 cut(s)	102, 501
Bst2BI	CACGAG	2 cut(s)	102, 501
Bst2UI	CCWGG	2 cut(s)	82, 528
Bst4CI	ACNGT	4 cut(s)	253, 437, 474, 518
Bst6I	CTCTTC	1 cut(s)	117
BstACI	GRCGYC	1 cut(s)	123
BstAUI	TGTACA	1 cut(s)	599
BstC8I	GCNNGC	3 cut(s)	9, 13, 38
BstDEI	CTNAG	2 cut(s)	321, 411
BstF5I	GGATG	2 cut(s)	570, 602
BstFNI	CGCG	1 cut(s)	534
BstKTI	GATC	6 cut(s)	204, 223, 304, 380, 463, 544
BstMAI	GTCTC	2 cut(s)	90, 112
BstMBI	GATC	6 cut(s)	201, 220, 301, 377, 460, 541
BstMWI	GCNNNNNNNGC	4 cut(s)	37, 238, 282, 573
BstNI	CCWGG	2 cut(s)	82, 528
BstSCI	CCNGG	3 cut(s)	80, 277, 526
BstUI	CGCG	1 cut(s)	534
BstV1I	GCAGC	1 cut(s)	260
BstX2I	RGATCY	1 cut(s)	460
BstXI	CCANNNNNNTGG	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	460
BsuRI	GGCC	2 cut(s)	7, 40
BtsCI	GGATG	2 cut(s)	570, 602
Cac8I	GCNNGC	3 cut(s)	9, 13, 38
CciI	TCATGA	1 cut(s)	292
Cfr10I	RCCGGY	1 cut(s)	36
Cfr13I	GGNCC	3 cut(s)	58, 214, 235
Csp6I	GTAC	1 cut(s)	600
CviAII	CATG	1 cut(s)	293
CviQI	GTAC	1 cut(s)	600
DdeI	CTNAG	2 cut(s)	321, 411
DpnI	GATC	6 cut(s)	203, 222, 303, 379, 462, 543
DpnII	GATC	6 cut(s)	201, 220, 301, 377, 460, 541
DraIII	CACNNNGTG	2 cut(s)	169, 310
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
EciI	GGCGGA	1 cut(s)	209
Ecl136II	GAGCTC	1 cut(s)	415
Eco24I	GRGCYC	1 cut(s)	417
Eco31I	GGTCTC	1 cut(s)	90
Eco47I	GGWCC	3 cut(s)	58, 214, 235
Eco53kI	GAGCTC	1 cut(s)	415
Eco88I	CYCGRG	1 cut(s)	242
EcoICRI	GAGCTC	1 cut(s)	415
EcoO109I	RGGNCCY	2 cut(s)	214, 235
EcoRII	CCWGG	2 cut(s)	80, 526
EcoT38I	GRGCYC	1 cut(s)	417
FaeI	CATG	1 cut(s)	296
FaiI	YATR	5 cut(s)	289, 294, 458, 483, 514
FaqI	GGGAC	3 cut(s)	71, 227, 248
FatI	CATG	1 cut(s)	292
FauI	CCCGC	4 cut(s)	168, 204, 225, 246
Fnu4HI	GCNGC	3 cut(s)	29, 77, 274
FokI	GGATG	1 cut(s)	557
FriOI	GRGCYC	1 cut(s)	417
Fsp4HI	GCNGC	3 cut(s)	29, 77, 274
FspBI	CTAG	1 cut(s)	405
GluI	GCNGC	3 cut(s)	29, 77, 274
GsaI	CCCAGC	1 cut(s)	187
GsuI	CTGGAG	1 cut(s)	247
HaeIII	GGCC	2 cut(s)	7, 40
HapII	CCGG	4 cut(s)	37, 259, 279, 521
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	1 cut(s)	296
HindIII	AAGCTT	1 cut(s)	154
HinfI	GANTC	2 cut(s)	105, 509
HpaII	CCGG	4 cut(s)	37, 259, 279, 521
HphI	GGTGA	2 cut(s)	87, 118
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	2 cut(s)	423, 546
Hpy188III	TCNNGA	6 cut(s)	116, 244, 259, 293, 405, 452
Hpy8I	GTNNAC	1 cut(s)	373
Hpy99I	CGWCG	2 cut(s)	134, 272
HpyAV	CCTTC	2 cut(s)	51, 184
HpyCH4III	ACNGT	4 cut(s)	253, 437, 474, 518
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	2 cut(s)	500, 581
HpyF10VI	GCNNNNNNNGC	4 cut(s)	37, 238, 282, 573
HpyF3I	CTNAG	2 cut(s)	321, 411
HpySE526I	ACGT	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	296
KflI	GGGWCCC	2 cut(s)	214, 235
Kpn2I	TCCGGA	1 cut(s)	258
KroI	GCCGGC	1 cut(s)	36
KroNI	GCCGGC	1 cut(s)	38
Kzo9I	GATC	6 cut(s)	201, 220, 301, 377, 460, 541
Lsp1109I	GCAGC	1 cut(s)	260
MaeI	CTAG	1 cut(s)	405
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	6 cut(s)	203, 222, 303, 379, 462, 543
MbiI	CCGCTC	1 cut(s)	241
MboI	GATC	6 cut(s)	201, 220, 301, 377, 460, 541
MboII	GAAGA	4 cut(s)	104, 184, 211, 518
MflI	RGATCY	1 cut(s)	460
MhlI	GDGCHC	1 cut(s)	417
MluCI	AATT	2 cut(s)	346, 465
MlyI	GAGTC	1 cut(s)	114
MnlI	CCTC	2 cut(s)	82, 222
MroI	TCCGGA	1 cut(s)	258
MroNI	GCCGGC	1 cut(s)	36
MseI	TTAA	1 cut(s)	53
MspI	CCGG	4 cut(s)	37, 259, 279, 521
MspR9I	CCNGG	3 cut(s)	82, 279, 528
MvaI	CCWGG	2 cut(s)	82, 528
MvnI	CGCG	1 cut(s)	534
MwoI	GCNNNNNNNGC	4 cut(s)	37, 238, 282, 573
NaeI	GCCGGC	1 cut(s)	38
NciI	CCSGG	1 cut(s)	279
NdeII	GATC	6 cut(s)	201, 220, 301, 377, 460, 541
NgoMIV	GCCGGC	1 cut(s)	36
NlaIII	CATG	1 cut(s)	296
NlaIV	GGNNCC	6 cut(s)	59, 215, 216, 236, 237, 525
NmuCI	GTSAC	1 cut(s)	124
PagI	TCATGA	1 cut(s)	292
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PdiI	GCCGGC	1 cut(s)	38
PfeI	GAWTC	1 cut(s)	509
PkrI	GCNGC	3 cut(s)	30, 78, 275
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
PpuMI	RGGWCCY	2 cut(s)	214, 235
Psp124BI	GAGCTC	1 cut(s)	417
Psp5II	RGGWCCY	2 cut(s)	214, 235
Psp6I	CCWGG	2 cut(s)	80, 526
PspFI	CCCAGC	1 cut(s)	183
PspGI	CCWGG	2 cut(s)	80, 526
PspN4I	GGNNCC	6 cut(s)	59, 215, 216, 236, 237, 525
PspPI	GGNCC	3 cut(s)	58, 214, 235
PspPPI	RGGWCCY	2 cut(s)	214, 235
PsuI	RGATCY	1 cut(s)	460
RsaI	GTAC	1 cut(s)	601
RsaNI	GTAC	1 cut(s)	600
SacI	GAGCTC	1 cut(s)	417
SaqAI	TTAA	1 cut(s)	53
SatI	GCNGC	3 cut(s)	29, 77, 274
Sau3AI	GATC	6 cut(s)	201, 220, 301, 377, 460, 541
Sau96I	GGNCC	3 cut(s)	58, 214, 235
SchI	GAGTC	1 cut(s)	114
ScrFI	CCNGG	3 cut(s)	82, 279, 528
SduI	GDGCHC	1 cut(s)	417
SinI	GGWCC	3 cut(s)	58, 214, 235
Sse9I	AATT	2 cut(s)	346, 465
SsiI	CCGC	9 cut(s)	28, 77, 161, 194, 211, 232, 239, 534, 574
SspMI	CTAG	1 cut(s)	405
SstI	GAGCTC	1 cut(s)	417
StyD4I	CCNGG	3 cut(s)	80, 277, 526
TaaI	ACNGT	4 cut(s)	253, 437, 474, 518
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	2 cut(s)	117, 391
TaqII	GACCGA	1 cut(s)	75
TasI	AATT	2 cut(s)	346, 465
TatI	WGTACW	1 cut(s)	599
TauI	GCSGC	2 cut(s)	31, 79
TfiI	GAWTC	1 cut(s)	509
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	1 cut(s)	273
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	2 cut(s)	33, 501
TspGWI	ACGGA	2 cut(s)	39, 482
VpaK11BI	GGWCC	3 cut(s)	58, 214, 235
XbaI	TCTAGA	1 cut(s)	404
XspI	CTAG	1 cut(s)	405
ZraI	GACGTC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.