Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0005496

Physical Location & Seq

Genomic Coordinates Reverse (-)

3361650 .. 3363756

Gene Structure 2107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG044100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAGGCCAGCAAGCAAAGAACCAAAGCGGCGTAGCCGGCCTTCATCTCCGTTAAGGGACCGAAACCCTAGCTCGCCGCCCAGGTCTCGTTTCTCACCACCACGAGTCTCTCTTCTCGATGACGTCACCGAAGACTTCGCTACCAACCCACGAAGCTTCCCGCACAGCGTGAAGAAACAATGCTGGGAGAAGGCGGAGAAGATCAAAGGGCGGGACCCAGATCGCTGGAGGCGGGACCCGCTCGGGAACACGGTGTTCCGGAAGCTCGTCGGCTGCCCCGGTTGCTTATGTCATGATTACGATCACATTGTGCCTTACTCTAAGGGTGGAGAAAGTACGCTTGAAAATTGTCAGGTTTTACAGGTTTGGACTTATTCTCTCTTTAGAAGCTTGTTACATATTATCTGCCATCTCCAGTCCAAGAAAATACCCTTTTACTTTTGTTTGTCACCAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HNH

Protein Analysis

152

Amino Acids

17.61

Weight (kDa)

9.71

Isoelectric Point (pI)

85.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47490 AT3G47490 AT3G47490 AT3G47490 AT3G47490 AT3G47490 AT3G47490
fragaria_vesca	FvH4_5g14820 FvH4_5g14820 FvH4_5g14820 FvH4_5g14820 FvH4_5g14820 FvH4_5g14820 FvH4_5g14820 FvH4_5g14820
malus_domestica	MD06G1194600.v1.1
prunus_persica	Prupe.5G194700_v2.0.a1
pyrus_communis	pycom06g17230
rosa_chinensis	RchiOBHm_Chr7g0181571
rosa_laevigata	RLG00000005182
rosa_multiflora	Rmu_sc0000988.1_g000021
rosa_roxburghii	Rroxscaffold_3G00271890
rosa_rugosa	Rorug06G0442300 Rorug06G0442400
rosa_samantha	Rh7AG044500 Rh7BG043500 Rh7CG045300 Rh7DG044100
rosa_wichuraiana	Rw7G003690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	126
AccBSI	CCGCTC	1 cut(s)	241
AccIII	TCCGGA	1 cut(s)	258
AciI	CCGC	7 cut(s)	28, 77, 161, 194, 211, 232, 239
AcyI	GRCGYC	1 cut(s)	123
AdeI	CACNNNGTG	2 cut(s)	169, 310
AfaI	GTAC	1 cut(s)	337
AgsI	TTSAA	1 cut(s)	344
AjnI	CCWGG	1 cut(s)	80
AluBI	AGCT	4 cut(s)	72, 156, 265, 390
AluI	AGCT	4 cut(s)	72, 156, 265, 390
Alw26I	GTCTC	2 cut(s)	90, 112
Ama87I	CYCGRG	1 cut(s)	242
Aor13HI	TCCGGA	1 cut(s)	258
AoxI	GGCC	2 cut(s)	5, 38
ApeKI	GCWGC	1 cut(s)	273
AspS9I	GGNCC	3 cut(s)	58, 214, 235
AsuC2I	CCSGG	1 cut(s)	279
AsuHPI	GGTGA	3 cut(s)	87, 118, 441
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	3 cut(s)	58, 214, 235
BarI	GAAGNNNNNNTAC	2 cut(s)	25, 57
BauI	CACGAG	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	260
BccI	CCATC	1 cut(s)	417
BciT130I	CCWGG	1 cut(s)	82
BcnI	CCSGG	1 cut(s)	279
BcoDI	GTCTC	2 cut(s)	90, 112
BfaI	CTAG	1 cut(s)	69
BisI	GCNGC	3 cut(s)	29, 77, 274
BlsI	GCNGC	3 cut(s)	30, 78, 275
Bme1390I	CCNGG	2 cut(s)	82, 279
Bme18I	GGWCC	3 cut(s)	58, 214, 235
BmeT110I	CYCGRG	1 cut(s)	242
BmgT120I	GGNCC	3 cut(s)	58, 214, 235
BmiI	GGNNCC	5 cut(s)	59, 215, 216, 236, 237
BmrFI	CCNGG	2 cut(s)	82, 279
BpiI	GAAGAC	1 cut(s)	138
BpmI	CTGGAG	2 cut(s)	247, 398
BpuMI	CCSGG	1 cut(s)	279
BsaBI	GATNNNNATC	1 cut(s)	300
BsaHI	GRCGYC	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	80, 277
BsaWI	WCCGGW	1 cut(s)	258
Bse118I	RCCGGY	1 cut(s)	36
Bse1I	ACTGG	2 cut(s)	415, 452
Bse8I	GATNNNNATC	1 cut(s)	300
BseAI	TCCGGA	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	82
BseDI	CCNNGG	2 cut(s)	80, 277
BseJI	GATNNNNATC	1 cut(s)	300
BseNI	ACTGG	2 cut(s)	415, 452
BseXI	GCAGC	1 cut(s)	260
BseYI	CCCAGC	1 cut(s)	183
BshFI	GGCC	2 cut(s)	7, 40
BsiHKCI	CYCGRG	1 cut(s)	242
BsiSI	CCGG	3 cut(s)	37, 259, 279
BslFI	GGGAC	3 cut(s)	71, 227, 248
BsmAI	GTCTC	2 cut(s)	90, 112
BsmFI	GGGAC	3 cut(s)	71, 227, 248
BsnI	GGCC	2 cut(s)	7, 40
Bso31I	GGTCTC	1 cut(s)	90
BsoBI	CYCGRG	1 cut(s)	242
Bsp13I	TCCGGA	1 cut(s)	258
Bsp143I	GATC	3 cut(s)	201, 220, 301
BspACI	CCGC	7 cut(s)	28, 77, 161, 194, 211, 232, 239
BspANI	GGCC	2 cut(s)	7, 40
BspEI	TCCGGA	1 cut(s)	258
BspHI	TCATGA	1 cut(s)	292
BspLI	GGNNCC	5 cut(s)	59, 215, 216, 236, 237
BspTNI	GGTCTC	1 cut(s)	90
BsrBI	CCGCTC	1 cut(s)	241
BsrFI	RCCGGY	1 cut(s)	36
BsrI	ACTGG	2 cut(s)	415, 452
BssAI	RCCGGY	1 cut(s)	36
BssECI	CCNNGG	2 cut(s)	80, 277
BssMI	GATC	3 cut(s)	201, 220, 301
BssNI	GRCGYC	1 cut(s)	123
BssSI	CACGAG	1 cut(s)	102
Bst2BI	CACGAG	1 cut(s)	102
Bst2UI	CCWGG	1 cut(s)	82
Bst4CI	ACNGT	1 cut(s)	253
Bst6I	CTCTTC	1 cut(s)	117
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	4 cut(s)	9, 13, 38, 74
BstDEI	CTNAG	1 cut(s)	321
BstKTI	GATC	3 cut(s)	204, 223, 304
BstMAI	GTCTC	2 cut(s)	90, 112
BstMBI	GATC	3 cut(s)	201, 220, 301
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 238, 282
BstNI	CCWGG	1 cut(s)	82
BstSCI	CCNGG	2 cut(s)	80, 277
BstV1I	GCAGC	1 cut(s)	260
BstV2I	GAAGAC	1 cut(s)	138
BstXI	CCANNNNNNTGG	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	7, 40
BtsIMutI	CAGTG	1 cut(s)	459
Cac8I	GCNNGC	4 cut(s)	9, 13, 38, 74
CciI	TCATGA	1 cut(s)	292
Cfr10I	RCCGGY	1 cut(s)	36
Cfr13I	GGNCC	3 cut(s)	58, 214, 235
Csp6I	GTAC	1 cut(s)	336
CviAII	CATG	1 cut(s)	293
CviJI	RGCY	8 cut(s)	7, 36, 40, 72, 156, 265, 273, 390
CviKI_1	RGCY	8 cut(s)	7, 36, 40, 72, 156, 265, 273, 390
CviQI	GTAC	1 cut(s)	336
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	3 cut(s)	203, 222, 303
DpnII	GATC	3 cut(s)	201, 220, 301
DraIII	CACNNNGTG	2 cut(s)	169, 310
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
EciI	GGCGGA	1 cut(s)	209
Eco31I	GGTCTC	1 cut(s)	90
Eco47I	GGWCC	3 cut(s)	58, 214, 235
Eco88I	CYCGRG	1 cut(s)	242
EcoO109I	RGGNCCY	2 cut(s)	214, 235
EcoRII	CCWGG	1 cut(s)	80
FaeI	CATG	1 cut(s)	296
FaiI	YATR	3 cut(s)	289, 294, 399
FaqI	GGGAC	3 cut(s)	71, 227, 248
FatI	CATG	1 cut(s)	292
FauI	CCCGC	4 cut(s)	168, 204, 225, 246
Fnu4HI	GCNGC	3 cut(s)	29, 77, 274
Fsp4HI	GCNGC	3 cut(s)	29, 77, 274
FspBI	CTAG	1 cut(s)	69
GluI	GCNGC	3 cut(s)	29, 77, 274
GsaI	CCCAGC	1 cut(s)	187
GsuI	CTGGAG	2 cut(s)	247, 398
HaeIII	GGCC	2 cut(s)	7, 40
HapII	CCGG	3 cut(s)	37, 259, 279
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	1 cut(s)	296
HindIII	AAGCTT	2 cut(s)	154, 388
HinfI	GANTC	1 cut(s)	105
HpaII	CCGG	3 cut(s)	37, 259, 279
HphI	GGTGA	3 cut(s)	87, 118, 441
Hpy188III	TCNNGA	4 cut(s)	116, 244, 259, 293
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	2 cut(s)	51, 184
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4IV	ACGT	1 cut(s)	123
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 238, 282
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	296
KflI	GGGWCCC	2 cut(s)	214, 235
Kpn2I	TCCGGA	1 cut(s)	258
KroI	GCCGGC	1 cut(s)	36
KroNI	GCCGGC	1 cut(s)	38
Kzo9I	GATC	3 cut(s)	201, 220, 301
Lsp1109I	GCAGC	1 cut(s)	260
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	3 cut(s)	124, 393, 447
MalI	GATC	3 cut(s)	203, 222, 303
MbiI	CCGCTC	1 cut(s)	241
MboI	GATC	3 cut(s)	201, 220, 301
MboII	GAAGA	4 cut(s)	104, 143, 184, 211
MluCI	AATT	1 cut(s)	346
MlyI	GAGTC	1 cut(s)	114
MnlI	CCTC	1 cut(s)	222
MroI	TCCGGA	1 cut(s)	258
MroNI	GCCGGC	1 cut(s)	36
MseI	TTAA	1 cut(s)	53
MspI	CCGG	3 cut(s)	37, 259, 279
MspR9I	CCNGG	2 cut(s)	82, 279
MvaI	CCWGG	1 cut(s)	82
MwoI	GCNNNNNNNGC	3 cut(s)	37, 238, 282
NaeI	GCCGGC	1 cut(s)	38
NciI	CCSGG	1 cut(s)	279
NdeII	GATC	3 cut(s)	201, 220, 301
NgoMIV	GCCGGC	1 cut(s)	36
NlaIII	CATG	1 cut(s)	296
NlaIV	GGNNCC	5 cut(s)	59, 215, 216, 236, 237
NmuCI	GTSAC	2 cut(s)	124, 447
PagI	TCATGA	1 cut(s)	292
PdiI	GCCGGC	1 cut(s)	38
PkrI	GCNGC	3 cut(s)	30, 78, 275
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
PpuMI	RGGWCCY	2 cut(s)	214, 235
Psp5II	RGGWCCY	2 cut(s)	214, 235
Psp6I	CCWGG	1 cut(s)	80
PspFI	CCCAGC	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	80
PspN4I	GGNNCC	5 cut(s)	59, 215, 216, 236, 237
PspPI	GGNCC	3 cut(s)	58, 214, 235
PspPPI	RGGWCCY	2 cut(s)	214, 235
RsaI	GTAC	1 cut(s)	337
RsaNI	GTAC	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	53
SatI	GCNGC	3 cut(s)	29, 77, 274
Sau3AI	GATC	3 cut(s)	201, 220, 301
Sau96I	GGNCC	3 cut(s)	58, 214, 235
SchI	GAGTC	1 cut(s)	114
ScrFI	CCNGG	2 cut(s)	82, 279
SetI	ASST	8 cut(s)	74, 86, 126, 158, 267, 357, 366, 392
SinI	GGWCC	3 cut(s)	58, 214, 235
Sse9I	AATT	1 cut(s)	346
SsiI	CCGC	7 cut(s)	28, 77, 161, 194, 211, 232, 239
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	2 cut(s)	80, 277
TaaI	ACNGT	1 cut(s)	253
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	117
TaqII	GACCGA	1 cut(s)	75
TasI	AATT	1 cut(s)	346
TauI	GCSGC	2 cut(s)	31, 79
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TscAI	CASTG	1 cut(s)	459
TseFI	GTSAC	2 cut(s)	124, 447
TseI	GCWGC	1 cut(s)	273
Tsp45I	GTSAC	2 cut(s)	124, 447
TspDTI	ATGAA	1 cut(s)	33
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	1 cut(s)	459
VpaK11BI	GGWCC	3 cut(s)	58, 214, 235
XspI	CTAG	1 cut(s)	69
ZraI	GACGTC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.