Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005496

Physical Location & Seq

Genomic Coordinates Forward (+)

57438409 .. 57444156

Gene Structure 5748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0442400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2391 bp

ATGGAGAAGAAGTTCCTTACGGTGGCGCCTTTCGAGTGCGCTTGGCGAAATGATTTGAAGTTCCGGGAAGCTGGGAGGGGCTGCGTGGCTTTTGAAGCGTTTGCTCACAATGATGTCACGCTGGTGTTCCGGGAGAACGTGGGAAGTCAGCACTATCATTACAAGAAAGATAATTGTCCTCACTACACTGTTATTTTGGGTAGTCATAGGAATAGGCGGTTGAAAATTGAGGTGGATGGGAAAACTGTGGTGGATGTGGAGGGTGTTGGTCTCTGTTCTTCCTCTGCATTTCAGAGCTATTGGATCAGTATCTGTGATGGTTTGATCAGTATTGGCAAGGGAAGGTACCCTTTTCAGAATCTTGTCTTTCAGTGGCTAGATTCGAATCCGAATTGTAGTGTTCGTTATGTTGGCCTTAGTAGTTGGGATAAACATGTTGGGTATAGGAATGTCAGTGTATTACCTTTAACTCACAACCATATATCCTTGTGGAAGAATTTGGATTGCAAGGACTACATGCATGAGGAAGCTGGCGAAGAGGAGTTGGAGGATGAACGAACCGGGGGGCTTGAAAATTTTCTTGAGAGCTGGGAACTATCTGATGTTCTTTTCGTTGTTGGTCCAGAAGAAAGGCATGTACCAGCTCACAAGCCTATTTTGGCAGCATCTGGGAATTTCCCTATATCATCAGAAGACGTTCTCCAGCTAAAGGGGATAACTTACCCCGTTCTCCATGCTCTACTTGAATATATTTACACAGGTCGAACCCAGATTTCAGAATCGCAGCTTAGTTCCTTGAGAGCTCTAGGTTTACAATTCGAAGTGATTTCATTAGTGAAGCAATGCGAGGAGTCCATGGAAAGATTCAAGCTAAATAAAAAGCTGTTTGACTCGGGCAAATGTGTAGAATTATCATACCCATGCAGTAGGCCACAGTGTTGGACAGCCTTCCCGTTTGGAGTTCCCATCAATGTCCTGAGGCTTAGGCAATTGCATTCAACTAACAAGTACAGTGATGTTAACATCTATATTGAAGGTCATGGCCTTATTGCCCAGTCGCATAAAATTATTCTCAGTTTATGGAGTCTCCCATTTGCAAAGATGTTCACAAATGGAATGTGTGAAACAATTTCCTCAGAGGTTCTTTTGAGAGACATATCACCAGAAGCGTTTCAAGCTTTGCTTGAGTTCATGTATAGTGGGGAACTCAATTTAGAAGCTACCATGGATTCTGGTGCCTTGTTACTCCAACTTTTTCTGTTGGCTGATCAATTTGGAGTCACTCTTCTTCATCAGGAATGCTGCAAAATGCTTTTAGAATGCCTATCAGAGGACTCGGTCTGTCTGATGCTTCAAGTGATTTCATCAATTCCCTCATGTCAACTTATTGAAGAAACTTGTGAGACGAACTTTTCTATGCACTTTGACTATTGCACAACTGCAAGCATTGACTTCGTTTTGTTAGATGATGCAACCTTTAGAAATATCATTCAGCATCCAGATTTGACTGTAACATCTGAAGAGAAGGTTCTCAATGCAATCTTAATGTGGGGTGCGAAAGCAAAGGAAGTGTGTGGTTGGGAGGTGGTGGATGAGATGATGACATATTCAACCGCAGAAGCTCTTTTTGGGGATAGGCTGCAGACAGTAAATGACCTTCTACCACTTGTTCGATTTGTGCTGCTGCCTTTGTCCTTGCTTGAGAAGTTACAGAAGAACAACATTAGCAGGCATATGTCTATGTTTAATAACCTTGTCAAGGAGGCCATCAATTATATCGAGCATGGATTGACAAGACCGGAAAACGAGCACAACCTGAGAATCCAACATAGGCGATCTAGTTATAAGGAGCTCCAGTACATATGTGATGGGGACAGCAATGGAGTCCTGTACTTTGCAGGTACATCATATGGAAAACATCAGTGGGTTAATCCTGTTCTGGCGAAGAGAATTACAATTACAGCTAGCAGTCCCCCTTCTAGGTTCACTGATCCCAAGGTTTTGGTCTCAAGATCTTACCAGGGAACATCCTTCGCTGGGCCACAGATTGAAGATGGGCGGAATAACACCTGGTGGATGGTCGACATTGGTGCAGATCATCAGCTGATTTGCAACTACTACACCTTGAGACATGATGGCTCCAGAGCACACATGAGATATTGGAATTTCCAGGGATCTCTGGATGGGAAGACGTGGACAAATCTGAGAGTACACGAGAATGACCAAACCATATGCAAGCCGGGGCAGTTCGCATCATGGCCAGTTACAGGACCAAATGCTCTACTTCCGTTCAGATTCTTTAGGGTTGTTCTGACTGGACCTACAATGGATGCTTCAAACCCTTGGAATTTCTGCATTTGCTTTTTAGAACTCTATGGCTACTTCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0010152 GO:0010468 GO:0010556 GO:0010769 GO:0019219 GO:0019222 GO:0021700 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044464 GO:0045595 GO:0048229 GO:0048638 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0051510 GO:0060255 GO:0060284 GO:0065007 GO:0080090 GO:0080092 GO:0140110 GO:1903506 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

796

Amino Acids

90.78

Weight (kDa)

5.75

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_FA	PF12248	11 - 151	3.4e-30	Farnesoic acid 0-methyl transferase
BTB	PF00651	190 - 287	4.8e-14	BTB/POZ domain
BTB	PF00651	329 - 440	4.6e-18	BTB/POZ domain
BTB_KLHL33	PF21536	368 - 406	1.5e-06	Kelch-like protein 33-like, BTB/POZ domain
BACK	PF07707	448 - 523	2.2e-06	BTB And C-terminal Kelch
F5_F8_type_C	PF00754	653 - 742	1.9e-06	F5/8 type C domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0005496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47490 AT3G47490 AT3G47490 AT3G47490 AT3G47490 AT3G47490 AT3G47490
fragaria_vesca	FvH4_5g14820 FvH4_5g14820 FvH4_5g14820 FvH4_5g14820 FvH4_5g14820 FvH4_5g14820 FvH4_5g14820 FvH4_5g14820
malus_domestica	MD06G1194600.v1.1
prunus_persica	Prupe.5G194700_v2.0.a1
pyrus_communis	pycom06g17230
rosa_chinensis	RchiOBHm_Chr7g0181571
rosa_laevigata	RLG00000005182
rosa_multiflora	Rmu_sc0000988.1_g000021
rosa_roxburghii	Rroxscaffold_3G00271890
rosa_rugosa	Rorug06G0442300 Rorug06G0442400
rosa_samantha	Rh7AG044500 Rh7BG043500 Rh7CG045300 Rh7DG044100
rosa_wichuraiana	Rw7G003690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1845
Acc36I	ACCTGC	1 cut(s)	1889
Acc65I	GGTACC	1 cut(s)	345
AccB1I	GGYRCC	3 cut(s)	25, 345, 1235
AccI	GTMKAC	1 cut(s)	2082
AciI	CCGC	3 cut(s)	217, 1614, 2059
AclWI	GGATC	3 cut(s)	311, 1985, 2182
AcoI	YGGCCR	1 cut(s)	2258
AcsI	RAATTY	5 cut(s)	496, 574, 673, 2164, 2347
AcuI	CTGAAG	1 cut(s)	1539
AcyI	GRCGYC	1 cut(s)	26
AdeI	CACNNNGTG	1 cut(s)	2073
AfaI	GTAC	7 cut(s)	347, 639, 1010, 1859, 1892, 1903, 2211
AfiI	CCNNNNNNNGG	7 cut(s)	22, 709, 1330, 1759, 1980, 2037, 2267
AflIII	ACRYGT	1 cut(s)	433
AjiI	CACGTC	1 cut(s)	2193
AjnI	CCWGG	3 cut(s)	2019, 2069, 2169
AjuI	GAANNNNNNNTTGG	2 cut(s)	1611, 1643
AleI	CACNNNNGTG	1 cut(s)	122
AloI	GAACNNNNNNTCC	1 cut(s)	28
Alw21I	GWGCWC	4 cut(s)	805, 1812, 1854, 2149
Alw26I	GTCTC	6 cut(s)	275, 1091, 1146, 1397, 2011, 2122
AlwI	GGATC	3 cut(s)	311, 1985, 2182
AlwNI	CAGNNNCTG	2 cut(s)	312, 668
Ama87I	CYCGRG	1 cut(s)	892
AoxI	GGCC	6 cut(s)	412, 929, 1042, 1764, 2039, 2258
ApeKI	GCWGC	7 cut(s)	81, 662, 784, 1302, 1639, 1681, 1684
ApoI	RAATTY	5 cut(s)	496, 574, 673, 2164, 2347
Asp700I	GAANNNNTTC	4 cut(s)	11, 576, 696, 1170
Asp718I	GGTACC	1 cut(s)	345
AspLEI	GCGC	2 cut(s)	28, 41
AspS9I	GGNCC	4 cut(s)	620, 2039, 2270, 2318
AsuC2I	CCSGG	4 cut(s)	65, 131, 562, 2241
AsuHPI	GGTGA	1 cut(s)	1152
AsuII	TTCGAA	2 cut(s)	383, 819
AsuNHI	GCTAGC	1 cut(s)	1964
AvaI	CYCGRG	1 cut(s)	892
AvaII	GGWCC	3 cut(s)	620, 2270, 2318
AxyI	CCTNAGG	1 cut(s)	977
BalI	TGGCCA	1 cut(s)	2260
BanI	GGYRCC	3 cut(s)	25, 345, 1235
BanII	GRGCYC	2 cut(s)	805, 1854
BarI	GAAGNNNNNNTAC	2 cut(s)	1641, 1673
BauI	CACGAG	1 cut(s)	2213
BbsI	GAAGAC	2 cut(s)	699, 2195
Bbv12I	GWGCWC	4 cut(s)	805, 1812, 1854, 2149
BbvI	GCAGC	7 cut(s)	68, 674, 796, 1289, 1626, 1668, 1671
BccI	CCATC	9 cut(s)	230, 311, 974, 1775, 1862, 2048, 2071, 2129, 2177
BcgI	CGANNNNNNTGC	4 cut(s)	1435, 1469, 2072, 2106
BciT130I	CCWGG	3 cut(s)	2021, 2071, 2171
BclI	TGATCA	2 cut(s)	324, 1267
BcnI	CCSGG	4 cut(s)	65, 131, 562, 2241
BcoDI	GTCTC	6 cut(s)	275, 1091, 1146, 1397, 2011, 2122
BfaI	CTAG	5 cut(s)	377, 806, 1839, 1965, 1980
BfmI	CTRYAG	1 cut(s)	1640
BfoI	RGCGCY	1 cut(s)	29
BfuAI	ACCTGC	1 cut(s)	1889
BglII	AGATCT	1 cut(s)	2012
BisI	GCNGC	7 cut(s)	82, 663, 785, 1303, 1640, 1682, 1685
BlsI	GCNGC	7 cut(s)	83, 664, 786, 1304, 1641, 1683, 1686
Bme1390I	CCNGG	7 cut(s)	65, 131, 562, 2021, 2071, 2171, 2241
Bme18I	GGWCC	3 cut(s)	620, 2270, 2318
BmeT110I	CYCGRG	1 cut(s)	892
BmgBI	CACGTC	1 cut(s)	2193
BmgT120I	GGNCC	4 cut(s)	620, 2039, 2270, 2318
BmiI	GGNNCC	4 cut(s)	27, 347, 1237, 2140
BmrFI	CCNGG	7 cut(s)	65, 131, 562, 2021, 2071, 2171, 2241
BmrI	ACTGGG	1 cut(s)	1048
BmsI	GCATC	6 cut(s)	674, 1338, 1459, 1504, 2261, 2320
BmtI	GCTAGC	1 cut(s)	1968
BmuI	ACTGGG	1 cut(s)	1048
BpiI	GAAGAC	2 cut(s)	699, 2195
BpmI	CTGGAG	3 cut(s)	686, 1838, 2125
Bpu10I	CCTNAGC	1 cut(s)	983
Bpu14I	TTCGAA	2 cut(s)	383, 819
BpuEI	CTTGAG	6 cut(s)	602, 817, 1205, 1721, 1993, 2146
BpuMI	CCSGG	4 cut(s)	65, 131, 562, 2241
BsaBI	GATNNNNATC	2 cut(s)	308, 384
BsaHI	GRCGYC	1 cut(s)	26
BsaI	GGTCTC	2 cut(s)	275, 2011
BsaJI	CCNNGG	8 cut(s)	561, 855, 1224, 1995, 2020, 2170, 2240, 2342
BsaWI	WCCGGW	1 cut(s)	1798
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 1841, 1871
Bsc4I	CCNNNNNNNGG	7 cut(s)	22, 709, 1330, 1759, 1980, 2037, 2267
Bse1I	ACTGG	4 cut(s)	1054, 1855, 2261, 2320
Bse21I	CCTNAGG	1 cut(s)	977
Bse3DI	GCAATG	2 cut(s)	848, 1885
Bse8I	GATNNNNATC	2 cut(s)	308, 384
BseBI	CCWGG	3 cut(s)	2021, 2071, 2171
BseDI	CCNNGG	8 cut(s)	561, 855, 1224, 1995, 2020, 2170, 2240, 2342
BseGI	GGATG	9 cut(s)	241, 259, 556, 1495, 1597, 2027, 2082, 2188, 2335
BseJI	GATNNNNATC	2 cut(s)	308, 384
BseLI	CCNNNNNNNGG	7 cut(s)	22, 709, 1330, 1759, 1980, 2037, 2267
BseMI	GCAATG	2 cut(s)	848, 1885
BseMII	CTCAG	5 cut(s)	968, 1087, 1149, 1808, 2195
BseNI	ACTGG	4 cut(s)	1054, 1855, 2261, 2320
BseRI	GAGGAG	2 cut(s)	554, 863
BseXI	GCAGC	7 cut(s)	68, 674, 796, 1289, 1626, 1668, 1671
BseYI	CCCAGC	3 cut(s)	71, 588, 2036
BsgI	GTGCAG	1 cut(s)	2112
BshFI	GGCC	6 cut(s)	414, 931, 1044, 1766, 2041, 2260
BshNI	GGYRCC	3 cut(s)	25, 345, 1235
BsiHKAI	GWGCWC	4 cut(s)	805, 1812, 1854, 2149
BsiHKCI	CYCGRG	1 cut(s)	892
BsiSI	CCGG	5 cut(s)	64, 130, 561, 1799, 2240
BslFI	GGGAC	2 cut(s)	1886, 1956
BslI	CCNNNNNNNGG	7 cut(s)	22, 709, 1330, 1759, 1980, 2037, 2267
BsmAI	GTCTC	6 cut(s)	275, 1091, 1146, 1397, 2011, 2122
BsmBI	CGTCTC	1 cut(s)	1397
BsmFI	GGGAC	2 cut(s)	1886, 1956
BsmI	GAATGC	3 cut(s)	994, 1304, 1325
BsnI	GGCC	6 cut(s)	414, 931, 1044, 1766, 2041, 2260
Bso31I	GGTCTC	2 cut(s)	275, 2011
BsoBI	CYCGRG	1 cut(s)	892
Bsp119I	TTCGAA	2 cut(s)	383, 819
Bsp1286I	GDGCHC	4 cut(s)	805, 1812, 1854, 2149
Bsp143I	GATC	8 cut(s)	303, 324, 1267, 1835, 1990, 2012, 2095, 2174
Bsp19I	CCATGG	2 cut(s)	855, 1224
BspACI	CCGC	3 cut(s)	217, 1614, 2059
BspANI	GGCC	6 cut(s)	414, 931, 1044, 1766, 2041, 2260
BspCNI	CTCAG	5 cut(s)	969, 1086, 1148, 1809, 2196
BspLI	GGNNCC	4 cut(s)	27, 347, 1237, 2140
BspMAI	CTGCAG	1 cut(s)	1644
BspMI	ACCTGC	1 cut(s)	1889
BspOI	GCTAGC	1 cut(s)	1968
BspPI	GGATC	3 cut(s)	311, 1985, 2182
BspT104I	TTCGAA	2 cut(s)	383, 819
BspT107I	GGYRCC	3 cut(s)	25, 345, 1235
BspTNI	GGTCTC	2 cut(s)	275, 2011
BsrDI	GCAATG	2 cut(s)	848, 1885
BsrI	ACTGG	4 cut(s)	1054, 1855, 2261, 2320
BssECI	CCNNGG	8 cut(s)	561, 855, 1224, 1995, 2020, 2170, 2240, 2342
BssMI	GATC	8 cut(s)	303, 324, 1267, 1835, 1990, 2012, 2095, 2174
BssNI	GRCGYC	1 cut(s)	26
BssSI	CACGAG	1 cut(s)	2213
BssT1I	CCWWGG	4 cut(s)	855, 1224, 1995, 2342
Bst2BI	CACGAG	1 cut(s)	2213
Bst2UI	CCWGG	3 cut(s)	2021, 2071, 2171
Bst4CI	ACNGT	7 cut(s)	22, 190, 247, 936, 1013, 1510, 1648
Bst6I	CTCTTC	4 cut(s)	531, 1290, 1515, 1940
BstACI	GRCGYC	1 cut(s)	26
BstBI	TTCGAA	2 cut(s)	383, 819
BstC8I	GCNNGC	5 cut(s)	532, 1444, 1730, 1966, 2237
BstDEI	CTNAG	8 cut(s)	416, 788, 977, 983, 1073, 1135, 1817, 2204
BstDSI	CCRYGG	2 cut(s)	855, 1224
BstENI	CCTNNNNNAGG	2 cut(s)	1328, 1757
BstF5I	GGATG	9 cut(s)	241, 259, 556, 1495, 1597, 2027, 2082, 2188, 2335
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	2 cut(s)	28, 41
BstKTI	GATC	8 cut(s)	306, 327, 1270, 1838, 1993, 2015, 2098, 2177
BstMAI	GTCTC	6 cut(s)	275, 1091, 1146, 1397, 2011, 2122
BstMBI	GATC	8 cut(s)	303, 324, 1267, 1835, 1990, 2012, 2095, 2174
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 1175
BstNI	CCWGG	3 cut(s)	2021, 2071, 2171
BstNSI	RCATGY	3 cut(s)	437, 520, 638
BstSCI	CCNGG	7 cut(s)	63, 129, 560, 2019, 2069, 2169, 2239
BstSFI	CTRYAG	1 cut(s)	1640
BstV1I	GCAGC	7 cut(s)	68, 674, 796, 1289, 1626, 1668, 1671
BstV2I	GAAGAC	2 cut(s)	699, 2195
BstX2I	RGATCY	2 cut(s)	2012, 2174
BstXI	CCANNNNNNTGG	2 cut(s)	939, 2002
BstYI	RGATCY	2 cut(s)	2012, 2174
Bsu36I	CCTNAGG	1 cut(s)	977
BsuRI	GGCC	6 cut(s)	414, 931, 1044, 1766, 2041, 2260
BtgI	CCRYGG	2 cut(s)	855, 1224
BtrI	CACGTC	1 cut(s)	2193
BtsCI	GGATG	9 cut(s)	241, 259, 556, 1495, 1597, 2027, 2082, 2188, 2335
BtsIMutI	CAGTG	7 cut(s)	186, 377, 460, 941, 1018, 1928, 1986
BveI	ACCTGC	1 cut(s)	1889
Cac8I	GCNNGC	5 cut(s)	532, 1444, 1730, 1966, 2237
CaiI	CAGNNNCTG	2 cut(s)	312, 668
CfoI	GCGC	2 cut(s)	28, 41
Cfr13I	GGNCC	4 cut(s)	620, 2039, 2270, 2318
CsiI	ACCWGGT	1 cut(s)	2069
Csp6I	GTAC	7 cut(s)	346, 638, 1009, 1858, 1891, 1902, 2210
CviQI	GTAC	7 cut(s)	346, 638, 1009, 1858, 1891, 1902, 2210
DdeI	CTNAG	8 cut(s)	416, 788, 977, 983, 1073, 1135, 1817, 2204
DinI	GGCGCC	1 cut(s)	27
DpnI	GATC	8 cut(s)	305, 326, 1269, 1837, 1992, 2014, 2097, 2176
DpnII	GATC	8 cut(s)	303, 324, 1267, 1835, 1990, 2012, 2095, 2174
DraIII	CACNNNGTG	1 cut(s)	2073
EaeI	YGGCCR	1 cut(s)	2258
Eam1104I	CTCTTC	4 cut(s)	531, 1290, 1515, 1940
EarI	CTCTTC	4 cut(s)	531, 1290, 1515, 1940
EciI	GGCGGA	1 cut(s)	2074
Ecl136II	GAGCTC	2 cut(s)	803, 1852
Eco130I	CCWWGG	4 cut(s)	855, 1224, 1995, 2342
Eco24I	GRGCYC	2 cut(s)	805, 1854
Eco31I	GGTCTC	2 cut(s)	275, 2011
Eco47I	GGWCC	3 cut(s)	620, 2270, 2318
Eco53kI	GAGCTC	2 cut(s)	803, 1852
Eco57I	CTGAAG	1 cut(s)	1539
Eco81I	CCTNAGG	1 cut(s)	977
Eco88I	CYCGRG	1 cut(s)	892
EcoICRI	GAGCTC	2 cut(s)	803, 1852
EcoNI	CCTNNNNNAGG	2 cut(s)	1328, 1757
EcoRII	CCWGG	3 cut(s)	2019, 2069, 2169
EcoT14I	CCWWGG	4 cut(s)	855, 1224, 1995, 2342
EcoT22I	ATGCAT	1 cut(s)	522
EcoT38I	GRGCYC	2 cut(s)	805, 1854
EgeI	GGCGCC	1 cut(s)	27
EheI	GGCGCC	1 cut(s)	27
ErhI	CCWWGG	4 cut(s)	855, 1224, 1995, 2342
Esp3I	CGTCTC	1 cut(s)	1397
FalI	AAGNNNNNCTT	4 cut(s)	334, 366, 1167, 1199
FaqI	GGGAC	2 cut(s)	1886, 1956
FauNDI	CATATG	4 cut(s)	1734, 1862, 1909, 2231
FbaI	TGATCA	2 cut(s)	324, 1267
FblI	GTMKAC	1 cut(s)	2082
Fnu4HI	GCNGC	7 cut(s)	82, 663, 785, 1303, 1640, 1682, 1685
FokI	GGATG	9 cut(s)	248, 266, 563, 1482, 1604, 2014, 2089, 2195, 2342
FriOI	GRGCYC	2 cut(s)	805, 1854
Fsp4HI	GCNGC	7 cut(s)	82, 663, 785, 1303, 1640, 1682, 1685
FspBI	CTAG	5 cut(s)	377, 806, 1839, 1965, 1980
GlaI	GCGC	2 cut(s)	27, 40
GluI	GCNGC	7 cut(s)	82, 663, 785, 1303, 1640, 1682, 1685
GsaI	CCCAGC	3 cut(s)	75, 592, 2040
GsuI	CTGGAG	3 cut(s)	686, 1838, 2125
HaeII	RGCGCY	1 cut(s)	29
HaeIII	GGCC	6 cut(s)	414, 931, 1044, 1766, 2041, 2260
HapII	CCGG	5 cut(s)	64, 130, 561, 1799, 2240
HhaI	GCGC	2 cut(s)	28, 41
Hin1I	GRCGYC	1 cut(s)	26
Hin6I	GCGC	2 cut(s)	26, 39
HinP1I	GCGC	2 cut(s)	26, 39
HincII	GTYRAC	3 cut(s)	1021, 1382, 2083
HindII	GTYRAC	3 cut(s)	1021, 1382, 2083
HindIII	AAGCTT	1 cut(s)	1176
HpaI	GTTAAC	1 cut(s)	1021
HpaII	CCGG	5 cut(s)	64, 130, 561, 1799, 2240
HphI	GGTGA	1 cut(s)	1152
Hpy166II	GTNNAC	8 cut(s)	812, 1021, 1107, 1382, 1986, 2083, 2196, 2212
Hpy188III	TCNNGA	8 cut(s)	581, 623, 976, 1295, 1499, 2010, 2142, 2180
Hpy8I	GTNNAC	8 cut(s)	812, 1021, 1107, 1382, 1986, 2083, 2196, 2212
HpyAV	CCTTC	7 cut(s)	336, 958, 1028, 1519, 1667, 1986, 2041
HpyCH4III	ACNGT	7 cut(s)	22, 190, 247, 936, 1013, 1510, 1648
HpyCH4IV	ACGT	3 cut(s)	138, 696, 2192
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 1175
HpyF3I	CTNAG	8 cut(s)	416, 788, 977, 983, 1073, 1135, 1817, 2204
HpySE526I	ACGT	3 cut(s)	138, 696, 2192
Hsp92I	GRCGYC	1 cut(s)	26
HspAI	GCGC	2 cut(s)	26, 39
KasI	GGCGCC	1 cut(s)	25
KpnI	GGTACC	1 cut(s)	349
Ksp22I	TGATCA	2 cut(s)	324, 1267
KspAI	GTTAAC	1 cut(s)	1021
Kzo9I	GATC	8 cut(s)	303, 324, 1267, 1835, 1990, 2012, 2095, 2174
LmnI	GCTCC	3 cut(s)	1849, 1857, 2144
Lsp1109I	GCAGC	7 cut(s)	68, 674, 796, 1289, 1626, 1668, 1671
LweI	GCATC	6 cut(s)	674, 1338, 1459, 1504, 2261, 2320
MabI	ACCWGGT	1 cut(s)	2069
MaeI	CTAG	5 cut(s)	377, 806, 1839, 1965, 1980
MaeII	ACGT	3 cut(s)	138, 696, 2192
MaeIII	GTNAC	6 cut(s)	115, 1242, 1279, 1510, 1707, 2263
MalI	GATC	8 cut(s)	305, 326, 1269, 1837, 1992, 2014, 2097, 2176
MboI	GATC	8 cut(s)	303, 324, 1267, 1835, 1990, 2012, 2095, 2174
MfeI	CAATTG	1 cut(s)	989
MflI	RGATCY	2 cut(s)	2012, 2174
MhlI	GDGCHC	4 cut(s)	805, 1812, 1854, 2149
MlsI	TGGCCA	1 cut(s)	2260
MluNI	TGGCCA	1 cut(s)	2260
Mly113I	GGCGCC	1 cut(s)	26
MlyI	GAGTC	6 cut(s)	860, 884, 1093, 1287, 1328, 1893
MmeI	TCCRAC	4 cut(s)	525, 920, 1273, 1849
Mox20I	TGGCCA	1 cut(s)	2260
Mph1103I	ATGCAT	1 cut(s)	522
MroXI	GAANNNNTTC	4 cut(s)	11, 576, 696, 1170
MscI	TGGCCA	1 cut(s)	2260
MseI	TTAA	5 cut(s)	467, 1020, 1544, 1746, 1929
MslI	CAYNNNNRTG	4 cut(s)	111, 122, 919, 2217
Msp20I	TGGCCA	1 cut(s)	2260
MspA1I	CMGCKG	1 cut(s)	2104
MspI	CCGG	5 cut(s)	64, 130, 561, 1799, 2240
MspR9I	CCNGG	7 cut(s)	65, 131, 562, 2021, 2071, 2171, 2241
MunI	CAATTG	1 cut(s)	989
Mva1269I	GAATGC	3 cut(s)	994, 1304, 1325
MvaI	CCWGG	3 cut(s)	2021, 2071, 2171
MwoI	GCNNNNNNNGC	2 cut(s)	95, 1175
NarI	GGCGCC	1 cut(s)	26
NciI	CCSGG	4 cut(s)	65, 131, 562, 2241
NcoI	CCATGG	2 cut(s)	855, 1224
NdeI	CATATG	4 cut(s)	1734, 1862, 1909, 2231
NdeII	GATC	8 cut(s)	303, 324, 1267, 1835, 1990, 2012, 2095, 2174
NheI	GCTAGC	1 cut(s)	1964
NlaIV	GGNNCC	4 cut(s)	27, 347, 1237, 2140
NmuCI	GTSAC	2 cut(s)	115, 1279
NsiI	ATGCAT	1 cut(s)	522
NspI	RCATGY	3 cut(s)	437, 520, 638
NspV	TTCGAA	2 cut(s)	383, 819
OliI	CACNNNNGTG	1 cut(s)	122
PciI	ACATGT	1 cut(s)	433
PctI	GAATGC	3 cut(s)	994, 1304, 1325
PdmI	GAANNNNTTC	4 cut(s)	11, 576, 696, 1170
PfeI	GAWTC	8 cut(s)	358, 380, 385, 779, 864, 1229, 1821, 2295
PflFI	GACNNNGTC	1 cut(s)	1337
PfoI	TCCNGGA	2 cut(s)	63, 129
PkrI	GCNGC	7 cut(s)	83, 664, 786, 1304, 1641, 1683, 1686
PleI	GAGTC	6 cut(s)	859, 884, 1092, 1286, 1328, 1892
PluTI	GGCGCC	1 cut(s)	29
PpsI	GAGTC	6 cut(s)	859, 884, 1092, 1286, 1328, 1892
PscI	ACATGT	1 cut(s)	433
PsiI	TTATAA	1 cut(s)	1845
Psp124BI	GAGCTC	2 cut(s)	805, 1854
Psp6I	CCWGG	3 cut(s)	2019, 2069, 2169
PspFI	CCCAGC	3 cut(s)	71, 588, 2036
PspGI	CCWGG	3 cut(s)	2019, 2069, 2169
PspN4I	GGNNCC	4 cut(s)	27, 347, 1237, 2140
PspPI	GGNCC	4 cut(s)	620, 2039, 2270, 2318
PstI	CTGCAG	1 cut(s)	1644
PstNI	CAGNNNCTG	2 cut(s)	312, 668
PsuI	RGATCY	2 cut(s)	2012, 2174
PsyI	GACNNNGTC	1 cut(s)	1337
PvuII	CAGCTG	1 cut(s)	2104
RsaI	GTAC	7 cut(s)	347, 639, 1010, 1859, 1892, 1903, 2211
RsaNI	GTAC	7 cut(s)	346, 638, 1009, 1858, 1891, 1902, 2210
RseI	CAYNNNNRTG	4 cut(s)	111, 122, 919, 2217
SacI	GAGCTC	2 cut(s)	805, 1854
SalI	GTCGAC	1 cut(s)	2081
SaqAI	TTAA	5 cut(s)	467, 1020, 1544, 1746, 1929
SatI	GCNGC	7 cut(s)	82, 663, 785, 1303, 1640, 1682, 1685
Sau3AI	GATC	8 cut(s)	303, 324, 1267, 1835, 1990, 2012, 2095, 2174
Sau96I	GGNCC	4 cut(s)	620, 2039, 2270, 2318
SchI	GAGTC	6 cut(s)	860, 884, 1093, 1287, 1328, 1893
ScrFI	CCNGG	7 cut(s)	65, 131, 562, 2021, 2071, 2171, 2241
SduI	GDGCHC	4 cut(s)	805, 1812, 1854, 2149
SexAI	ACCWGGT	1 cut(s)	2069
SfaNI	GCATC	6 cut(s)	674, 1338, 1459, 1504, 2261, 2320
SfcI	CTRYAG	1 cut(s)	1640
SfoI	GGCGCC	1 cut(s)	27
SfuI	TTCGAA	2 cut(s)	383, 819
SinI	GGWCC	3 cut(s)	620, 2270, 2318
SmiMI	CAYNNNNRTG	4 cut(s)	111, 122, 919, 2217
SmlI	CTYRAG	6 cut(s)	581, 796, 1184, 1700, 2008, 2125
SmoI	CTYRAG	6 cut(s)	581, 796, 1184, 1700, 2008, 2125
SsiI	CCGC	3 cut(s)	217, 1614, 2059
SspDI	GGCGCC	1 cut(s)	25
SspMI	CTAG	5 cut(s)	377, 806, 1839, 1965, 1980
SstI	GAGCTC	2 cut(s)	805, 1854
StyD4I	CCNGG	7 cut(s)	63, 129, 560, 2019, 2069, 2169, 2239
StyI	CCWWGG	4 cut(s)	855, 1224, 1995, 2342
TaaI	ACNGT	7 cut(s)	22, 190, 247, 936, 1013, 1510, 1648
TaiI	ACGT	3 cut(s)	141, 699, 2195
TaqI	TCGA	7 cut(s)	33, 383, 763, 819, 1672, 1779, 2082
TaqII	GACCGA	1 cut(s)	1327
TatI	WGTACW	4 cut(s)	1008, 1857, 1890, 2209
TfiI	GAWTC	8 cut(s)	358, 380, 385, 779, 864, 1229, 1821, 2295
Tru1I	TTAA	5 cut(s)	467, 1020, 1544, 1746, 1929
Tru9I	TTAA	5 cut(s)	467, 1020, 1544, 1746, 1929
TscAI	CASTG	7 cut(s)	193, 377, 460, 941, 1018, 1928, 1993
TseFI	GTSAC	2 cut(s)	115, 1279
TseI	GCWGC	7 cut(s)	81, 662, 784, 1302, 1639, 1681, 1684
Tsp45I	GTSAC	2 cut(s)	115, 1279
TspDTI	ATGAA	5 cut(s)	567, 819, 1180, 1280, 1353
TspGWI	ACGGA	1 cut(s)	2277
TspRI	CASTG	7 cut(s)	193, 377, 460, 941, 1018, 1928, 1993
Tth111I	GACNNNGTC	1 cut(s)	1337
VpaK11BI	GGWCC	3 cut(s)	620, 2270, 2318
XagI	CCTNNNNNAGG	2 cut(s)	1328, 1757
XapI	RAATTY	5 cut(s)	496, 574, 673, 2164, 2347
XceI	RCATGY	3 cut(s)	437, 520, 638
XmiI	GTMKAC	1 cut(s)	2082
XmnI	GAANNNNTTC	4 cut(s)	11, 576, 696, 1170
XspI	CTAG	5 cut(s)	377, 806, 1839, 1965, 1980
Zsp2I	ATGCAT	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.