Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005496

Physical Location & Seq

Genomic Coordinates Reverse (-)

2752773 .. 2755243

Gene Structure 2471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG043500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAGGCCAGCAAGCAAAGAACCAAAGCGGCGTAGCCGCCCTTCATCTCCGTTGAGGGACCGAAACCCAACCTCGCCGCCGCCCAGGTCTCGTTTCTCACCACCACGAGTCTCTCTTCTCGATGACGTCACCGACGACTTCGCTAACAACCCACGAAGCTTCCCGCACAGCGTGAAGAAACAATGCTGGGAGAAGGCGGAAAAGATCAAAGGGCGGGACCCAGATCGCTGGCGGCGGGACCCGCTCGGGAACACCGTGTTCCGGAAGCTCGTCGGCTGCCCCGGTTGCTTATGTCATGATTACGATCACATTGTGCCTTACTCTAAGGGTGGAGAAAGTACGCTTGAAAATTGTCAGGTTTTACAGGCAAAAGTGAACAGATCAAAAGGAAATCGAACAGAGTATTCTAGAGCTGAGCTCATTCAGAAAAGTTCTTACTGTCGGGTTTCAGGTCGCGATATGGATCTAATTGAACTGTCAGCCTATGGCAATGTCCGTCCTGCACGAGAAGATTCATACTGTCCGGTTCCAGGTCGTGGTGTTGATCTGATTGACTTGTCAGCCAAAGGCAACATCCGCAATGCACAAGAGTTTTGGGGATGTACAATCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HNH

Protein Analysis

204

Amino Acids

23.16

Weight (kDa)

9.52

Isoelectric Point (pI)

64.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47490 AT3G47490 AT3G47490 AT3G47490 AT3G47490 AT3G47490 AT3G47490
fragaria_vesca	FvH4_5g14820 FvH4_5g14820 FvH4_5g14820 FvH4_5g14820 FvH4_5g14820 FvH4_5g14820 FvH4_5g14820 FvH4_5g14820
malus_domestica	MD06G1194600.v1.1
prunus_persica	Prupe.5G194700_v2.0.a1
pyrus_communis	pycom06g17230
rosa_chinensis	RchiOBHm_Chr7g0181571
rosa_laevigata	RLG00000005182
rosa_multiflora	Rmu_sc0000988.1_g000021
rosa_roxburghii	Rroxscaffold_3G00271890
rosa_rugosa	Rorug06G0442300 Rorug06G0442400
rosa_samantha	Rh7AG044500 Rh7BG043500 Rh7CG045300 Rh7DG044100
rosa_wichuraiana	Rw7G003690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	129
AccB7I	CCANNNNNTGG	1 cut(s)	536
AccBSI	CCGCTC	1 cut(s)	244
AccII	CGCG	1 cut(s)	456
AccIII	TCCGGA	1 cut(s)	261
AclWI	GGATC	1 cut(s)	471
AcyI	GRCGYC	1 cut(s)	126
AdeI	CACNNNGTG	2 cut(s)	172, 313
AfaI	GTAC	2 cut(s)	340, 604
AfiI	CCNNNNNNNGG	3 cut(s)	261, 530, 536
AgsI	TTSAA	2 cut(s)	347, 473
AjnI	CCWGG	2 cut(s)	83, 529
AluBI	AGCT	4 cut(s)	159, 268, 413, 418
AluI	AGCT	4 cut(s)	159, 268, 413, 418
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	2 cut(s)	93, 115
AlwI	GGATC	1 cut(s)	471
Ama87I	CYCGRG	1 cut(s)	245
Aor13HI	TCCGGA	1 cut(s)	261
AoxI	GGCC	1 cut(s)	5
ApeKI	GCWGC	1 cut(s)	276
AspS9I	GGNCC	3 cut(s)	58, 217, 238
AsuC2I	CCSGG	1 cut(s)	282
AsuHPI	GGTGA	2 cut(s)	90, 121
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	3 cut(s)	58, 217, 238
BanII	GRGCYC	1 cut(s)	420
BarI	GAAGNNNNNNTAC	2 cut(s)	25, 57
BauI	CACGAG	2 cut(s)	105, 504
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	1 cut(s)	263
BciT130I	CCWGG	2 cut(s)	85, 531
BcnI	CCSGG	1 cut(s)	282
BcoDI	GTCTC	2 cut(s)	93, 115
BfaI	CTAG	1 cut(s)	408
BisI	GCNGC	6 cut(s)	29, 37, 77, 80, 233, 277
BlpI	GCTNAGC	1 cut(s)	414
BlsI	GCNGC	6 cut(s)	30, 38, 78, 81, 234, 278
Bme1390I	CCNGG	3 cut(s)	85, 282, 531
Bme18I	GGWCC	3 cut(s)	58, 217, 238
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	3 cut(s)	58, 217, 238
BmiI	GGNNCC	6 cut(s)	59, 218, 219, 239, 240, 528
BmrFI	CCNGG	3 cut(s)	85, 282, 531
BplI	GAGNNNNNCTC	2 cut(s)	402, 434
Bpu1102I	GCTNAGC	1 cut(s)	414
BpuMI	CCSGG	1 cut(s)	282
BsaBI	GATNNNNATC	2 cut(s)	303, 462
BsaHI	GRCGYC	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	83, 280
BsaWI	WCCGGW	2 cut(s)	261, 523
Bsc4I	CCNNNNNNNGG	3 cut(s)	261, 530, 536
Bse3DI	GCAATG	2 cut(s)	496, 586
Bse8I	GATNNNNATC	2 cut(s)	303, 462
BseAI	TCCGGA	1 cut(s)	261
BseBI	CCWGG	2 cut(s)	85, 531
BseDI	CCNNGG	2 cut(s)	83, 280
BseGI	GGATG	2 cut(s)	573, 605
BseJI	GATNNNNATC	2 cut(s)	303, 462
BseLI	CCNNNNNNNGG	3 cut(s)	261, 530, 536
BseMI	GCAATG	2 cut(s)	496, 586
BseMII	CTCAG	1 cut(s)	405
BseXI	GCAGC	1 cut(s)	263
BseYI	CCCAGC	1 cut(s)	186
BsgI	GTGCAG	1 cut(s)	486
Bsh1236I	CGCG	1 cut(s)	456
BshFI	GGCC	1 cut(s)	7
BsiHKAI	GWGCWC	1 cut(s)	420
BsiHKCI	CYCGRG	1 cut(s)	245
BsiSI	CCGG	3 cut(s)	262, 282, 524
BslFI	GGGAC	3 cut(s)	71, 230, 251
BslI	CCNNNNNNNGG	3 cut(s)	261, 530, 536
BsmAI	GTCTC	2 cut(s)	93, 115
BsmFI	GGGAC	3 cut(s)	71, 230, 251
BsnI	GGCC	1 cut(s)	7
Bso31I	GGTCTC	1 cut(s)	93
BsoBI	CYCGRG	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp13I	TCCGGA	1 cut(s)	261
Bsp1407I	TGTACA	1 cut(s)	602
Bsp143I	GATC	6 cut(s)	204, 223, 304, 380, 463, 544
Bsp1720I	GCTNAGC	1 cut(s)	414
Bsp68I	TCGCGA	1 cut(s)	456
BspANI	GGCC	1 cut(s)	7
BspCNI	CTCAG	1 cut(s)	406
BspEI	TCCGGA	1 cut(s)	261
BspFNI	CGCG	1 cut(s)	456
BspHI	TCATGA	1 cut(s)	295
BspLI	GGNNCC	6 cut(s)	59, 218, 219, 239, 240, 528
BspPI	GGATC	1 cut(s)	471
BspTNI	GGTCTC	1 cut(s)	93
BsrBI	CCGCTC	1 cut(s)	244
BsrDI	GCAATG	2 cut(s)	496, 586
BsrGI	TGTACA	1 cut(s)	602
BssECI	CCNNGG	2 cut(s)	83, 280
BssMI	GATC	6 cut(s)	204, 223, 304, 380, 463, 544
BssNI	GRCGYC	1 cut(s)	126
BssSI	CACGAG	2 cut(s)	105, 504
Bst2BI	CACGAG	2 cut(s)	105, 504
Bst2UI	CCWGG	2 cut(s)	85, 531
Bst4CI	ACNGT	4 cut(s)	256, 440, 477, 521
Bst6I	CTCTTC	1 cut(s)	120
BstACI	GRCGYC	1 cut(s)	126
BstAUI	TGTACA	1 cut(s)	602
BstC8I	GCNNGC	3 cut(s)	9, 13, 230
BstDEI	CTNAG	2 cut(s)	324, 414
BstF5I	GGATG	2 cut(s)	573, 605
BstFNI	CGCG	1 cut(s)	456
BstKTI	GATC	6 cut(s)	207, 226, 307, 383, 466, 547
BstMAI	GTCTC	2 cut(s)	93, 115
BstMBI	GATC	6 cut(s)	204, 223, 304, 380, 463, 544
BstMWI	GCNNNNNNNGC	3 cut(s)	241, 285, 576
BstNI	CCWGG	2 cut(s)	85, 531
BstSCI	CCNGG	3 cut(s)	83, 280, 529
BstUI	CGCG	1 cut(s)	456
BstV1I	GCAGC	1 cut(s)	263
BstX2I	RGATCY	1 cut(s)	463
BstXI	CCANNNNNNTGG	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	463
BsuRI	GGCC	1 cut(s)	7
BtsCI	GGATG	2 cut(s)	573, 605
BtuMI	TCGCGA	1 cut(s)	456
Cac8I	GCNNGC	3 cut(s)	9, 13, 230
CciI	TCATGA	1 cut(s)	295
Cfr13I	GGNCC	3 cut(s)	58, 217, 238
Csp6I	GTAC	2 cut(s)	339, 603
CviAII	CATG	1 cut(s)	296
CviJI	RGCY	9 cut(s)	7, 36, 159, 268, 276, 413, 418, 482, 563
CviKI_1	RGCY	9 cut(s)	7, 36, 159, 268, 276, 413, 418, 482, 563
CviQI	GTAC	2 cut(s)	339, 603
DdeI	CTNAG	2 cut(s)	324, 414
DpnI	GATC	6 cut(s)	206, 225, 306, 382, 465, 546
DpnII	GATC	6 cut(s)	204, 223, 304, 380, 463, 544
DraIII	CACNNNGTG	2 cut(s)	172, 313
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
EciI	GGCGGA	1 cut(s)	212
Ecl136II	GAGCTC	1 cut(s)	418
Eco24I	GRGCYC	1 cut(s)	420
Eco31I	GGTCTC	1 cut(s)	93
Eco47I	GGWCC	3 cut(s)	58, 217, 238
Eco53kI	GAGCTC	1 cut(s)	418
Eco88I	CYCGRG	1 cut(s)	245
EcoICRI	GAGCTC	1 cut(s)	418
EcoO109I	RGGNCCY	2 cut(s)	217, 238
EcoRII	CCWGG	2 cut(s)	83, 529
EcoT38I	GRGCYC	1 cut(s)	420
FaeI	CATG	1 cut(s)	299
FaiI	YATR	5 cut(s)	292, 297, 461, 486, 517
FaqI	GGGAC	3 cut(s)	71, 230, 251
FatI	CATG	1 cut(s)	295
FauI	CCCGC	4 cut(s)	171, 207, 228, 249
Fnu4HI	GCNGC	6 cut(s)	29, 37, 77, 80, 233, 277
FokI	GGATG	1 cut(s)	560
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	6 cut(s)	29, 37, 77, 80, 233, 277
FspBI	CTAG	1 cut(s)	408
GluI	GCNGC	6 cut(s)	29, 37, 77, 80, 233, 277
GsaI	CCCAGC	1 cut(s)	190
HaeIII	GGCC	1 cut(s)	7
HapII	CCGG	3 cut(s)	262, 282, 524
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	1 cut(s)	299
HindIII	AAGCTT	1 cut(s)	157
HinfI	GANTC	2 cut(s)	108, 512
HpaII	CCGG	3 cut(s)	262, 282, 524
HphI	GGTGA	2 cut(s)	90, 121
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	2 cut(s)	426, 549
Hpy188III	TCNNGA	6 cut(s)	119, 247, 262, 296, 408, 455
Hpy8I	GTNNAC	1 cut(s)	376
Hpy99I	CGWCG	2 cut(s)	137, 275
HpyAV	CCTTC	2 cut(s)	51, 187
HpyCH4III	ACNGT	4 cut(s)	256, 440, 477, 521
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	2 cut(s)	503, 584
HpyF10VI	GCNNNNNNNGC	3 cut(s)	241, 285, 576
HpyF3I	CTNAG	2 cut(s)	324, 414
HpySE526I	ACGT	1 cut(s)	126
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	299
KflI	GGGWCCC	2 cut(s)	217, 238
Kpn2I	TCCGGA	1 cut(s)	261
Kzo9I	GATC	6 cut(s)	204, 223, 304, 380, 463, 544
Lsp1109I	GCAGC	1 cut(s)	263
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	6 cut(s)	206, 225, 306, 382, 465, 546
MbiI	CCGCTC	1 cut(s)	244
MboI	GATC	6 cut(s)	204, 223, 304, 380, 463, 544
MboII	GAAGA	3 cut(s)	107, 187, 521
MflI	RGATCY	1 cut(s)	463
MhlI	GDGCHC	1 cut(s)	420
MluCI	AATT	2 cut(s)	349, 468
MlyI	GAGTC	1 cut(s)	117
MnlI	CCTC	2 cut(s)	48, 82
MroI	TCCGGA	1 cut(s)	261
MspI	CCGG	3 cut(s)	262, 282, 524
MspR9I	CCNGG	3 cut(s)	85, 282, 531
MvaI	CCWGG	2 cut(s)	85, 531
MvnI	CGCG	1 cut(s)	456
MwoI	GCNNNNNNNGC	3 cut(s)	241, 285, 576
NciI	CCSGG	1 cut(s)	282
NdeII	GATC	6 cut(s)	204, 223, 304, 380, 463, 544
NlaIII	CATG	1 cut(s)	299
NlaIV	GGNNCC	6 cut(s)	59, 218, 219, 239, 240, 528
NmuCI	GTSAC	1 cut(s)	127
NruI	TCGCGA	1 cut(s)	456
PagI	TCATGA	1 cut(s)	295
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 252
PfeI	GAWTC	1 cut(s)	512
PflMI	CCANNNNNTGG	1 cut(s)	536
PkrI	GCNGC	6 cut(s)	30, 38, 78, 81, 234, 278
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PpuMI	RGGWCCY	2 cut(s)	217, 238
Psp124BI	GAGCTC	1 cut(s)	420
Psp5II	RGGWCCY	2 cut(s)	217, 238
Psp6I	CCWGG	2 cut(s)	83, 529
PspFI	CCCAGC	1 cut(s)	186
PspGI	CCWGG	2 cut(s)	83, 529
PspN4I	GGNNCC	6 cut(s)	59, 218, 219, 239, 240, 528
PspPI	GGNCC	3 cut(s)	58, 217, 238
PspPPI	RGGWCCY	2 cut(s)	217, 238
PsuI	RGATCY	1 cut(s)	463
RruI	TCGCGA	1 cut(s)	456
RsaI	GTAC	2 cut(s)	340, 604
RsaNI	GTAC	2 cut(s)	339, 603
SacI	GAGCTC	1 cut(s)	420
SatI	GCNGC	6 cut(s)	29, 37, 77, 80, 233, 277
Sau3AI	GATC	6 cut(s)	204, 223, 304, 380, 463, 544
Sau96I	GGNCC	3 cut(s)	58, 217, 238
SchI	GAGTC	1 cut(s)	117
ScrFI	CCNGG	3 cut(s)	85, 282, 531
SduI	GDGCHC	1 cut(s)	420
SinI	GGWCC	3 cut(s)	58, 217, 238
Sse9I	AATT	2 cut(s)	349, 468
SspMI	CTAG	1 cut(s)	408
SstI	GAGCTC	1 cut(s)	420
StyD4I	CCNGG	3 cut(s)	83, 280, 529
TaaI	ACNGT	4 cut(s)	256, 440, 477, 521
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	2 cut(s)	120, 394
TaqII	GACCGA	1 cut(s)	75
TasI	AATT	2 cut(s)	349, 468
TatI	WGTACW	1 cut(s)	602
TauI	GCSGC	5 cut(s)	31, 39, 79, 82, 235
TfiI	GAWTC	1 cut(s)	512
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	276
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	2 cut(s)	33, 504
TspGWI	ACGGA	2 cut(s)	39, 485
Van91I	CCANNNNNTGG	1 cut(s)	536
VpaK11BI	GGWCC	3 cut(s)	58, 217, 238
XbaI	TCTAGA	1 cut(s)	407
XspI	CTAG	1 cut(s)	408
ZraI	GACGTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.