Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010454

Physical Location & Seq

Genomic Coordinates Forward (+)

18370521 .. 18372139

Gene Structure 1619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G49560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGTGGTAGGCGGCGGAGGAGAAGGAGATCAGAAGAGAAGCAGCGGAGAAATGATGGCGATGGCGAGTTTATTCAACGATCAGCAGAATCCAATTCAACAGTTTCAGGTTAAATTCAAAGAAGTAGAAACTAATTTCAAGACATGGTTGTCGAAACAGTCGATTCCGGTGGAAGCCGCCGTCGTATCCACCATGAGCGGTGTACAAGGAGCTTTCATTGGTGGTCTCATGGGAACACTCTCTCCTGAAATGCCTCAAGCCGGCGTTGACCCTCAAGCCATAGCTTCGATGAAACAAGCTCAGGCTCTTGTGGGTGGTCCTTGGGTCCAAGCTCGGAATTTTGCTGCAATTACTGGTGTGAATGCTGGAATTGCTTCTGTTATGAAGCGGATTAGAGGCAAAGAGGATATTGAATCTGCAGTGGTGGCAGCGTTAGGATCTGGATTTGCATACTCATTGGTGAGCCAAGGATTGCAAGGACAACCTATGAATGCAATCACTACTGCTGCTGGTTTTGCTGTTTTTCAAGGAGTGTTTTTTAAATTGGGAGAAAGATTCTCTAAACCGAGTACTGAAGATCCATTTTTCACAAGAGGAAGGACAATGCTAGTGAAGCTAGGTTTGGAGAAATACGAGAAGAACTTCAAGAAAGGACTTTTAACTGATCCCACATTGCCATTGCTCACTGATAGCGCGCTGAAAGATGCGAACATCCCACCAGGGCCAAGACTTATGATACTAGATCATATCCAGAGGGACCCGGAGATAAAGGGCAAACGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006403 GO:0006605 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016031 GO:0016043 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0035927 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051031 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0055085 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1 Tim17

Protein Analysis

261

Amino Acids

27.98

Weight (kDa)

9.49

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	58 - 175	8.5e-13	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49560 AT5G24650
fragaria_vesca	FvH4_7g33330 FvH4_7g33330
malus_domestica	MD01G1231500.v1.1 MD07G1303500.v1.1
prunus_persica	Prupe.2G322200_v2.0.a1 Prupe.2G322200_v2.0.a1
pyrus_communis	pycom01g23950 pycom07g27640
rosa_chinensis	RchiOBHm_Chr1g0383311
rosa_laevigata	RLG00000026114
rosa_multiflora	Rmu_sc0007173.1_g000018 Rmu_sc0014196.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277410
rosa_rugosa	Rorug01G0440400
rosa_samantha	Rh1AG466200 Rh1BG423500 Rh1CG436700 Rh1DG456200
rosa_wichuraiana	Rw1G040630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	148
AccBSI	CCGCTC	1 cut(s)	198
AccII	CGCG	1 cut(s)	695
AciI	CCGC	6 cut(s)	12, 15, 45, 177, 198, 388
AclWI	GGATC	3 cut(s)	445, 572, 659
AcsI	RAATTY	2 cut(s)	113, 337
AcuI	CTGAAG	1 cut(s)	594
AfaI	GTAC	2 cut(s)	204, 571
AfiI	CCNNNNNNNGG	1 cut(s)	260
AgsI	TTSAA	7 cut(s)	76, 98, 118, 139, 413, 527, 646
AjnI	CCWGG	1 cut(s)	718
AjuI	GAANNNNNNNTTGG	2 cut(s)	605, 637
AloI	GAACNNNNNNTCC	2 cut(s)	226, 258
AluBI	AGCT	5 cut(s)	212, 284, 299, 332, 616
AluI	AGCT	5 cut(s)	212, 284, 299, 332, 616
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	3 cut(s)	445, 572, 659
AoxI	GGCC	1 cut(s)	722
ApeKI	GCWGC	4 cut(s)	42, 344, 428, 506
ApoI	RAATTY	2 cut(s)	113, 337
Asp700I	GAANNNNTTC	2 cut(s)	373, 641
AspLEI	GCGC	2 cut(s)	695, 697
AspS9I	GGNCC	4 cut(s)	317, 325, 722, 757
AsuC2I	CCSGG	1 cut(s)	761
AsuHPI	GGTGA	1 cut(s)	472
AvaII	GGWCC	3 cut(s)	317, 325, 757
BbvI	GCAGC	4 cut(s)	54, 331, 440, 493
BccI	CCATC	2 cut(s)	49, 55
BceAI	ACGGC	1 cut(s)	164
BciT130I	CCWGG	1 cut(s)	720
BciVI	GTATCC	1 cut(s)	196
BcnI	CCSGG	1 cut(s)	761
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	3 cut(s)	608, 617, 740
BfmI	CTRYAG	1 cut(s)	417
BfuI	GTATCC	1 cut(s)	196
BisI	GCNGC	6 cut(s)	13, 43, 177, 345, 429, 507
BlsI	GCNGC	6 cut(s)	14, 44, 178, 346, 430, 508
BmcAI	AGTACT	1 cut(s)	571
Bme1390I	CCNGG	2 cut(s)	720, 761
Bme18I	GGWCC	3 cut(s)	317, 325, 757
BmgT120I	GGNCC	4 cut(s)	317, 325, 722, 757
BmiI	GGNNCC	3 cut(s)	326, 758, 759
BmrFI	CCNGG	2 cut(s)	720, 761
BmsI	GCATC	1 cut(s)	694
Bpu10I	CCTNAGC	1 cut(s)	300
BpuEI	CTTGAG	2 cut(s)	240, 258
BpuMI	CCSGG	1 cut(s)	761
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	3 cut(s)	320, 466, 719
BsaWI	WCCGGW	1 cut(s)	166
BsaXI	ACNNNNNCTCC	2 cut(s)	226, 256
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse118I	RCCGGY	1 cut(s)	260
Bse1I	ACTGG	1 cut(s)	358
Bse3DI	GCAATG	2 cut(s)	671, 677
BseBI	CCWGG	1 cut(s)	720
BseDI	CCNNGG	3 cut(s)	320, 466, 719
BseGI	GGATG	1 cut(s)	711
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMI	GCAATG	2 cut(s)	671, 677
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	1 cut(s)	358
BsePI	GCGCGC	1 cut(s)	693
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	4 cut(s)	54, 331, 440, 493
Bsh1236I	CGCG	1 cut(s)	695
BshFI	GGCC	1 cut(s)	724
BsiSI	CCGG	3 cut(s)	167, 261, 761
BslFI	GGGAC	1 cut(s)	770
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmAI	GTCTC	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	770
BsmI	GAATGC	2 cut(s)	367, 496
BsnI	GGCC	1 cut(s)	724
Bso31I	GGTCTC	1 cut(s)	230
Bsp1407I	TGTACA	1 cut(s)	202
Bsp143I	GATC	6 cut(s)	28, 79, 437, 577, 664, 742
BspACI	CCGC	6 cut(s)	12, 15, 45, 177, 198, 388
BspANI	GGCC	1 cut(s)	724
BspCNI	CTCAG	1 cut(s)	313
BspFNI	CGCG	1 cut(s)	695
BspLI	GGNNCC	3 cut(s)	326, 758, 759
BspMAI	CTGCAG	1 cut(s)	421
BspPI	GGATC	3 cut(s)	445, 572, 659
BspTNI	GGTCTC	1 cut(s)	230
BsrBI	CCGCTC	1 cut(s)	198
BsrDI	GCAATG	2 cut(s)	671, 677
BsrFI	RCCGGY	1 cut(s)	260
BsrGI	TGTACA	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	358
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	3 cut(s)	320, 466, 719
BssHII	GCGCGC	1 cut(s)	693
BssMI	GATC	6 cut(s)	28, 79, 437, 577, 664, 742
BssT1I	CCWWGG	2 cut(s)	320, 466
Bst2UI	CCWGG	1 cut(s)	720
Bst4CI	ACNGT	2 cut(s)	102, 159
Bst6I	CTCTTC	1 cut(s)	29
BstAUI	TGTACA	1 cut(s)	202
BstC8I	GCNNGC	2 cut(s)	262, 695
BstDEI	CTNAG	1 cut(s)	300
BstF5I	GGATG	1 cut(s)	711
BstFNI	CGCG	1 cut(s)	695
BstHHI	GCGC	2 cut(s)	695, 697
BstKTI	GATC	6 cut(s)	31, 82, 440, 580, 667, 745
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	6 cut(s)	28, 79, 437, 577, 664, 742
BstMWI	GCNNNNNNNGC	4 cut(s)	371, 425, 515, 613
BstNI	CCWGG	1 cut(s)	720
BstSCI	CCNGG	2 cut(s)	718, 759
BstSFI	CTRYAG	1 cut(s)	417
BstUI	CGCG	1 cut(s)	695
BstV1I	GCAGC	4 cut(s)	54, 331, 440, 493
BstX2I	RGATCY	2 cut(s)	437, 577
BstYI	RGATCY	2 cut(s)	437, 577
BsuI	GTATCC	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	724
BtgZI	GCGATG	1 cut(s)	74
BtsCI	GGATG	1 cut(s)	711
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	2 cut(s)	426, 684
Cac8I	GCNNGC	2 cut(s)	262, 695
CfoI	GCGC	2 cut(s)	695, 697
Cfr10I	RCCGGY	1 cut(s)	260
Cfr13I	GGNCC	4 cut(s)	317, 325, 722, 757
Csp6I	GTAC	2 cut(s)	203, 570
CviAII	CATG	3 cut(s)	144, 193, 229
CviQI	GTAC	2 cut(s)	203, 570
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	6 cut(s)	30, 81, 439, 579, 666, 744
DpnII	GATC	6 cut(s)	28, 79, 437, 577, 664, 742
DraI	TTTAAA	1 cut(s)	541
DrdI	GACNNNNNNGTC	1 cut(s)	148
DseDI	GACNNNNNNGTC	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
EciI	GGCGGA	1 cut(s)	30
Eco130I	CCWWGG	2 cut(s)	320, 466
Eco31I	GGTCTC	1 cut(s)	230
Eco47I	GGWCC	3 cut(s)	317, 325, 757
Eco57I	CTGAAG	1 cut(s)	594
EcoO109I	RGGNCCY	1 cut(s)	757
EcoRII	CCWGG	1 cut(s)	718
EcoT14I	CCWWGG	2 cut(s)	320, 466
ErhI	CCWWGG	2 cut(s)	320, 466
FaeI	CATG	3 cut(s)	147, 196, 232
FaiI	YATR	9 cut(s)	145, 194, 230, 281, 383, 451, 488, 734, 747
FaqI	GGGAC	1 cut(s)	770
FatI	CATG	3 cut(s)	143, 192, 228
Fnu4HI	GCNGC	6 cut(s)	13, 43, 177, 345, 429, 507
FokI	GGATG	1 cut(s)	698
Fsp4HI	GCNGC	6 cut(s)	13, 43, 177, 345, 429, 507
FspBI	CTAG	3 cut(s)	608, 617, 740
GlaI	GCGC	2 cut(s)	694, 696
GluI	GCNGC	6 cut(s)	13, 43, 177, 345, 429, 507
HaeIII	GGCC	1 cut(s)	724
HapII	CCGG	3 cut(s)	167, 261, 761
HhaI	GCGC	2 cut(s)	695, 697
Hin1II	CATG	3 cut(s)	147, 196, 232
Hin6I	GCGC	2 cut(s)	693, 695
HinP1I	GCGC	2 cut(s)	693, 695
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	4 cut(s)	88, 163, 413, 555
HpaII	CCGG	3 cut(s)	167, 261, 761
HphI	GGTGA	1 cut(s)	472
Hpy166II	GTNNAC	2 cut(s)	203, 268
Hpy188I	TCNGA	2 cut(s)	33, 336
Hpy188III	TCNNGA	5 cut(s)	139, 245, 441, 646, 751
Hpy8I	GTNNAC	2 cut(s)	203, 268
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	2 cut(s)	17, 591
HpyCH4III	ACNGT	2 cut(s)	102, 159
HpyCH4V	TGCA	5 cut(s)	347, 419, 449, 475, 494
HpyF10VI	GCNNNNNNNGC	4 cut(s)	371, 425, 515, 613
HpyF3I	CTNAG	1 cut(s)	300
Hsp92II	CATG	3 cut(s)	147, 196, 232
HspAI	GCGC	2 cut(s)	693, 695
KflI	GGGWCCC	1 cut(s)	757
KroI	GCCGGC	1 cut(s)	260
KroNI	GCCGGC	1 cut(s)	262
Kzo9I	GATC	6 cut(s)	28, 79, 437, 577, 664, 742
LmnI	GCTCC	1 cut(s)	209
Lsp1109I	GCAGC	4 cut(s)	54, 331, 440, 493
LweI	GCATC	1 cut(s)	694
MaeI	CTAG	3 cut(s)	608, 617, 740
MalI	GATC	6 cut(s)	30, 81, 439, 579, 666, 744
MbiI	CCGCTC	1 cut(s)	198
MboI	GATC	6 cut(s)	28, 79, 437, 577, 664, 742
MboII	GAAGA	3 cut(s)	46, 587, 649
MflI	RGATCY	2 cut(s)	437, 577
MluCI	AATT	7 cut(s)	93, 113, 133, 337, 348, 369, 542
MnlI	CCTC	7 cut(s)	11, 264, 282, 389, 397, 587, 747
MroNI	GCCGGC	1 cut(s)	260
MroXI	GAANNNNTTC	2 cut(s)	373, 641
MseI	TTAA	3 cut(s)	111, 540, 659
MspA1I	CMGCKG	1 cut(s)	45
MspI	CCGG	3 cut(s)	167, 261, 761
MspR9I	CCNGG	2 cut(s)	720, 761
Mva1269I	GAATGC	2 cut(s)	367, 496
MvaI	CCWGG	1 cut(s)	720
MvnI	CGCG	1 cut(s)	695
MwoI	GCNNNNNNNGC	4 cut(s)	371, 425, 515, 613
NaeI	GCCGGC	1 cut(s)	262
NciI	CCSGG	1 cut(s)	761
NdeII	GATC	6 cut(s)	28, 79, 437, 577, 664, 742
NgoMIV	GCCGGC	1 cut(s)	260
NlaIII	CATG	3 cut(s)	147, 196, 232
NlaIV	GGNNCC	3 cut(s)	326, 758, 759
PauI	GCGCGC	1 cut(s)	693
PcsI	WCGNNNNNNNCGW	1 cut(s)	158
PctI	GAATGC	2 cut(s)	367, 496
PdiI	GCCGGC	1 cut(s)	262
PdmI	GAANNNNTTC	2 cut(s)	373, 641
PfeI	GAWTC	4 cut(s)	88, 163, 413, 555
PkrI	GCNGC	6 cut(s)	14, 44, 178, 346, 430, 508
PpuMI	RGGWCCY	1 cut(s)	757
Psp5II	RGGWCCY	1 cut(s)	757
Psp6I	CCWGG	1 cut(s)	718
PspGI	CCWGG	1 cut(s)	718
PspN4I	GGNNCC	3 cut(s)	326, 758, 759
PspPI	GGNCC	4 cut(s)	317, 325, 722, 757
PspPPI	RGGWCCY	1 cut(s)	757
PstI	CTGCAG	1 cut(s)	421
PsuI	RGATCY	2 cut(s)	437, 577
PteI	GCGCGC	1 cut(s)	693
RsaI	GTAC	2 cut(s)	204, 571
RsaNI	GTAC	2 cut(s)	203, 570
SaqAI	TTAA	3 cut(s)	111, 540, 659
SatI	GCNGC	6 cut(s)	13, 43, 177, 345, 429, 507
Sau3AI	GATC	6 cut(s)	28, 79, 437, 577, 664, 742
Sau96I	GGNCC	4 cut(s)	317, 325, 722, 757
ScaI	AGTACT	1 cut(s)	571
ScrFI	CCNGG	2 cut(s)	720, 761
SetI	ASST	8 cut(s)	111, 214, 286, 301, 334, 487, 618, 622
SfaNI	GCATC	1 cut(s)	694
SfcI	CTRYAG	1 cut(s)	417
SinI	GGWCC	3 cut(s)	317, 325, 757
SmlI	CTYRAG	2 cut(s)	255, 273
SmoI	CTYRAG	2 cut(s)	255, 273
Sse9I	AATT	7 cut(s)	93, 113, 133, 337, 348, 369, 542
SsiI	CCGC	6 cut(s)	12, 15, 45, 177, 198, 388
SspMI	CTAG	3 cut(s)	608, 617, 740
StyD4I	CCNGG	2 cut(s)	718, 759
StyI	CCWWGG	2 cut(s)	320, 466
TaaI	ACNGT	2 cut(s)	102, 159
TaqI	TCGA	3 cut(s)	152, 161, 287
TasI	AATT	7 cut(s)	93, 113, 133, 337, 348, 369, 542
TatI	WGTACW	2 cut(s)	202, 569
TauI	GCSGC	2 cut(s)	15, 179
TfiI	GAWTC	4 cut(s)	88, 163, 413, 555
Tru1I	TTAA	3 cut(s)	111, 540, 659
Tru9I	TTAA	3 cut(s)	111, 540, 659
TscAI	CASTG	2 cut(s)	426, 691
TseI	GCWGC	4 cut(s)	42, 344, 428, 506
TspDTI	ATGAA	4 cut(s)	205, 305, 398, 503
TspRI	CASTG	2 cut(s)	426, 691
VpaK11BI	GGWCC	3 cut(s)	317, 325, 757
XapI	RAATTY	2 cut(s)	113, 337
XmnI	GAANNNNTTC	2 cut(s)	373, 641
XspI	CTAG	3 cut(s)	608, 617, 740
ZrmI	AGTACT	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.