Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0010454

Physical Location & Seq

Genomic Coordinates Forward (+)

23717220 .. 23720112

Gene Structure 2893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g33330.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGAGCAAGGAAATAGAGGCACCATGGTCTCCATGCTCCCCCAGCAGAACCAAAACCCCTTACAGCAGTTGCAGGCTCGCGTCAAGCACCTCGAGACCGGCTTCCGCTCCTGGCTCGCCAAGCAGTCCGTCGCCGTCGAAGCAGCCATCGTCACCGTCGCCAGCGGCGCTCAGGGAGCCGCTATCGGCGGCATCATGGGTACTCTCACCGGCGACATCTCCTCCGCTCTCCCCACTCCTCCTCAGGCCCTCAACCCCCAGGCCATGGCGTCCTTCAAGCAAGCTCAGGCTCTGGCTGGAGGTCCATTGGTACAAGCGAGGAACTTTGCTGTGATGACTGGTGCCAATGCTGGGATATCTTGTGTTATGAGGAGACTGAGAGGAAAGGAGGATGTCCAATCGAGCATGGTCGCGGCTTTTGGTTCAGGTGCTCTGTTTTCATTGGTGAGTGGTTTTGGTGGCCCTAATCAAGTACAGAATGCACTTACATCTGGAATTTTCTTTGCAGCTGTTCAAGGTGGACTCTTCAAGTTGGGGCAAAGGTTTTCCAAAGTACCATCGGTAGATAAAGATTTGTACTATTCTAAAACAAGAAGCATGTTGAGTAACCTTGGCCTCGATCATTATGAGAAGAATTTCAAGAATGGCTTGCTAACAGACTACACATTGCCTCTGCTGAATGATAGTGCACTTAGGGAGGTGAAAATCCCTCCAGGACCAAGGCTTCTCATTCTTGATCACATTCAGAGGGACCCGGAGTTTCAAGAGAAGCGGAAACACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0006403 GO:0006605 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016031 GO:0016043 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0035927 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051031 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0055085 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1 Tim17

Protein Analysis

262

Amino Acids

28.01

Weight (kDa)

9.9

Isoelectric Point (pI)

35.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	52 - 171	3.9e-14	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49560 AT5G24650
fragaria_vesca	FvH4_7g33330 FvH4_7g33330
malus_domestica	MD01G1231500.v1.1 MD07G1303500.v1.1
prunus_persica	Prupe.2G322200_v2.0.a1 Prupe.2G322200_v2.0.a1
pyrus_communis	pycom01g23950 pycom07g27640
rosa_chinensis	RchiOBHm_Chr1g0383311
rosa_laevigata	RLG00000026114
rosa_multiflora	Rmu_sc0007173.1_g000018 Rmu_sc0014196.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277410
rosa_rugosa	Rorug01G0440400
rosa_samantha	Rh1AG466200 Rh1BG423500 Rh1CG436700 Rh1DG456200
rosa_wichuraiana	Rw1G040630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	20, 341
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccBSI	CCGCTC	2 cut(s)	108, 227
AccII	CGCG	2 cut(s)	81, 413
AciI	CCGC	7 cut(s)	106, 165, 180, 189, 225, 413, 772
AcsI	RAATTY	2 cut(s)	495, 634
AcyI	GRCGYC	1 cut(s)	269
AfaI	GTAC	5 cut(s)	202, 312, 474, 555, 578
AfiI	CCNNNNNNNGG	2 cut(s)	265, 351
AgsI	TTSAA	5 cut(s)	277, 515, 529, 640, 764
AjnI	CCWGG	3 cut(s)	110, 258, 712
AluBI	AGCT	2 cut(s)	284, 509
AluI	AGCT	2 cut(s)	284, 509
Alw21I	GWGCWC	2 cut(s)	433, 691
Alw26I	GTCTC	3 cut(s)	34, 89, 367
Alw44I	GTGCAC	1 cut(s)	687
AlwNI	CAGNNNCTG	1 cut(s)	292
Ama87I	CYCGRG	1 cut(s)	92
AoxI	GGCC	4 cut(s)	246, 261, 460, 613
ApaLI	GTGCAC	1 cut(s)	687
ApeKI	GCWGC	2 cut(s)	143, 506
ApoI	RAATTY	2 cut(s)	495, 634
Asp700I	GAANNNNTTC	1 cut(s)	635
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	5 cut(s)	247, 302, 461, 716, 751
AsuC2I	CCSGG	1 cut(s)	755
AsuHPI	GGTGA	4 cut(s)	145, 199, 457, 712
AvaI	CYCGRG	1 cut(s)	92
AvaII	GGWCC	3 cut(s)	302, 716, 751
AxyI	CCTNAGG	1 cut(s)	243
BaeGI	GKGCMC	1 cut(s)	691
BanI	GGYRCC	2 cut(s)	20, 341
Bbv12I	GWGCWC	2 cut(s)	433, 691
BbvI	GCAGC	2 cut(s)	155, 518
BccI	CCATC	2 cut(s)	155, 565
BceAI	ACGGC	1 cut(s)	119
BciT130I	CCWGG	3 cut(s)	112, 260, 714
BclI	TGATCA	1 cut(s)	736
BcnI	CCSGG	1 cut(s)	755
BcoDI	GTCTC	3 cut(s)	34, 89, 367
BfoI	RGCGCY	1 cut(s)	171
BisI	GCNGC	6 cut(s)	144, 166, 180, 190, 414, 507
BlsI	GCNGC	6 cut(s)	145, 167, 181, 191, 415, 508
Bme1390I	CCNGG	4 cut(s)	112, 260, 714, 755
Bme18I	GGWCC	3 cut(s)	302, 716, 751
BmeT110I	CYCGRG	1 cut(s)	92
BmgT120I	GGNCC	5 cut(s)	247, 302, 461, 716, 751
BmiI	GGNNCC	5 cut(s)	22, 178, 343, 752, 753
BmrFI	CCNGG	4 cut(s)	112, 260, 714, 755
BmsI	GCATC	1 cut(s)	201
BpmI	CTGGAG	2 cut(s)	318, 696
Bpu10I	CCTNAGC	2 cut(s)	171, 285
BpuMI	CCSGG	1 cut(s)	755
BsaHI	GRCGYC	1 cut(s)	269
BsaI	GGTCTC	2 cut(s)	34, 89
BsaJI	CCNNGG	5 cut(s)	24, 258, 264, 610, 719
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 351
Bse118I	RCCGGY	2 cut(s)	98, 209
Bse1I	ACTGG	1 cut(s)	343
Bse21I	CCTNAGG	1 cut(s)	243
Bse3DI	GCAATG	1 cut(s)	665
BseBI	CCWGG	3 cut(s)	112, 260, 714
BseDI	CCNNGG	5 cut(s)	24, 258, 264, 610, 719
BseGI	GGATG	1 cut(s)	397
BseLI	CCNNNNNNNGG	2 cut(s)	265, 351
BseMI	GCAATG	1 cut(s)	665
BseMII	CTCAG	4 cut(s)	185, 257, 299, 368
BseNI	ACTGG	1 cut(s)	343
BseRI	GAGGAG	4 cut(s)	211, 228, 231, 385
BseSI	GKGCMC	1 cut(s)	691
BseXI	GCAGC	2 cut(s)	155, 518
BseYI	CCCAGC	2 cut(s)	42, 350
Bsh1236I	CGCG	2 cut(s)	81, 413
BshFI	GGCC	4 cut(s)	248, 263, 462, 615
BshNI	GGYRCC	2 cut(s)	20, 341
BsiHKAI	GWGCWC	2 cut(s)	433, 691
BsiHKCI	CYCGRG	1 cut(s)	92
BsiSI	CCGG	3 cut(s)	99, 210, 755
BslFI	GGGAC	1 cut(s)	764
BslI	CCNNNNNNNGG	2 cut(s)	265, 351
BsmAI	GTCTC	3 cut(s)	34, 89, 367
BsmFI	GGGAC	1 cut(s)	764
BsmI	GAATGC	1 cut(s)	484
BsnI	GGCC	4 cut(s)	248, 263, 462, 615
Bso31I	GGTCTC	2 cut(s)	34, 89
BsoBI	CYCGRG	1 cut(s)	92
Bsp1286I	GDGCHC	2 cut(s)	433, 691
Bsp143I	GATC	2 cut(s)	619, 736
Bsp19I	CCATGG	2 cut(s)	24, 264
BspACI	CCGC	7 cut(s)	106, 165, 180, 189, 225, 413, 772
BspANI	GGCC	4 cut(s)	248, 263, 462, 615
BspCNI	CTCAG	4 cut(s)	184, 256, 298, 369
BspFNI	CGCG	2 cut(s)	81, 413
BspLI	GGNNCC	5 cut(s)	22, 178, 343, 752, 753
BspT107I	GGYRCC	2 cut(s)	20, 341
BspTNI	GGTCTC	2 cut(s)	34, 89
BsrBI	CCGCTC	2 cut(s)	108, 227
BsrDI	GCAATG	1 cut(s)	665
BsrFI	RCCGGY	2 cut(s)	98, 209
BsrI	ACTGG	1 cut(s)	343
BssAI	RCCGGY	2 cut(s)	98, 209
BssECI	CCNNGG	5 cut(s)	24, 258, 264, 610, 719
BssMI	GATC	2 cut(s)	619, 736
BssNI	GRCGYC	1 cut(s)	269
BssT1I	CCWWGG	4 cut(s)	24, 264, 610, 719
Bst2UI	CCWGG	3 cut(s)	112, 260, 714
Bst4CI	ACNGT	1 cut(s)	157
Bst6I	CTCTTC	1 cut(s)	530
BstACI	GRCGYC	1 cut(s)	269
BstC8I	GCNNGC	6 cut(s)	75, 79, 117, 163, 282, 650
BstDEI	CTNAG	5 cut(s)	171, 243, 285, 377, 692
BstDSI	CCRYGG	2 cut(s)	24, 264
BstF5I	GGATG	1 cut(s)	397
BstFNI	CGCG	2 cut(s)	81, 413
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	2 cut(s)	622, 739
BstMAI	GTCTC	3 cut(s)	34, 89, 367
BstMBI	GATC	2 cut(s)	619, 736
BstMWI	GCNNNNNNNGC	5 cut(s)	43, 121, 140, 167, 176
BstNI	CCWGG	3 cut(s)	112, 260, 714
BstNSI	RCATGY	1 cut(s)	601
BstSCI	CCNGG	4 cut(s)	110, 258, 712, 753
BstSLI	GKGCMC	1 cut(s)	691
BstUI	CGCG	2 cut(s)	81, 413
BstV1I	GCAGC	2 cut(s)	155, 518
Bsu36I	CCTNAGG	1 cut(s)	243
BsuRI	GGCC	4 cut(s)	248, 263, 462, 615
BtgI	CCRYGG	2 cut(s)	24, 264
BtsCI	GGATG	1 cut(s)	397
Cac8I	GCNNGC	6 cut(s)	75, 79, 117, 163, 282, 650
CaiI	CAGNNNCTG	1 cut(s)	292
CfoI	GCGC	1 cut(s)	170
Cfr10I	RCCGGY	2 cut(s)	98, 209
Cfr13I	GGNCC	5 cut(s)	247, 302, 461, 716, 751
CseI	GACGC	2 cut(s)	70, 258
Csp6I	GTAC	5 cut(s)	201, 311, 473, 554, 577
CviAII	CATG	6 cut(s)	25, 34, 196, 265, 406, 598
CviQI	GTAC	5 cut(s)	201, 311, 473, 554, 577
DdeI	CTNAG	5 cut(s)	171, 243, 285, 377, 692
DpnI	GATC	2 cut(s)	621, 738
DpnII	GATC	2 cut(s)	619, 736
Eam1104I	CTCTTC	1 cut(s)	530
EarI	CTCTTC	1 cut(s)	530
Eco130I	CCWWGG	4 cut(s)	24, 264, 610, 719
Eco31I	GGTCTC	2 cut(s)	34, 89
Eco32I	GATATC	1 cut(s)	357
Eco47I	GGWCC	3 cut(s)	302, 716, 751
Eco81I	CCTNAGG	1 cut(s)	243
Eco88I	CYCGRG	1 cut(s)	92
EcoO109I	RGGNCCY	2 cut(s)	247, 751
EcoRII	CCWGG	3 cut(s)	110, 258, 712
EcoRV	GATATC	1 cut(s)	357
EcoT14I	CCWWGG	4 cut(s)	24, 264, 610, 719
ErhI	CCWWGG	4 cut(s)	24, 264, 610, 719
FaeI	CATG	6 cut(s)	28, 37, 199, 268, 409, 601
FaiI	YATR	8 cut(s)	26, 35, 197, 266, 368, 407, 599, 627
FalI	AAGNNNNNCTT	2 cut(s)	632, 664
FaqI	GGGAC	1 cut(s)	764
FatI	CATG	6 cut(s)	24, 33, 195, 264, 405, 597
FbaI	TGATCA	1 cut(s)	736
Fnu4HI	GCNGC	6 cut(s)	144, 166, 180, 190, 414, 507
FokI	GGATG	1 cut(s)	404
Fsp4HI	GCNGC	6 cut(s)	144, 166, 180, 190, 414, 507
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	6 cut(s)	144, 166, 180, 190, 414, 507
GsaI	CCCAGC	2 cut(s)	46, 354
GsuI	CTGGAG	2 cut(s)	318, 696
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	4 cut(s)	248, 263, 462, 615
HapII	CCGG	3 cut(s)	99, 210, 755
HgaI	GACGC	2 cut(s)	70, 258
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	1 cut(s)	269
Hin1II	CATG	6 cut(s)	28, 37, 199, 268, 409, 601
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HinfI	GANTC	1 cut(s)	522
HpaII	CCGG	3 cut(s)	99, 210, 755
HphI	GGTGA	4 cut(s)	145, 199, 457, 712
Hpy166II	GTNNAC	2 cut(s)	521, 689
Hpy188I	TCNGA	1 cut(s)	747
Hpy188III	TCNNGA	5 cut(s)	94, 492, 640, 734, 764
Hpy8I	GTNNAC	2 cut(s)	521, 689
Hpy99I	CGWCG	3 cut(s)	134, 140, 161
HpyAV	CCTTC	1 cut(s)	283
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4V	TGCA	4 cut(s)	73, 482, 506, 689
HpyF10VI	GCNNNNNNNGC	5 cut(s)	43, 121, 140, 167, 176
HpyF3I	CTNAG	5 cut(s)	171, 243, 285, 377, 692
Hsp92I	GRCGYC	1 cut(s)	269
Hsp92II	CATG	6 cut(s)	28, 37, 199, 268, 409, 601
HspAI	GCGC	1 cut(s)	168
KflI	GGGWCCC	1 cut(s)	751
Ksp22I	TGATCA	1 cut(s)	736
Kzo9I	GATC	2 cut(s)	619, 736
LmnI	GCTCC	4 cut(s)	4, 42, 113, 176
Lsp1109I	GCAGC	2 cut(s)	155, 518
LweI	GCATC	1 cut(s)	201
MaeIII	GTNAC	2 cut(s)	151, 605
MalI	GATC	2 cut(s)	621, 738
MbiI	CCGCTC	2 cut(s)	108, 227
MboI	GATC	2 cut(s)	619, 736
MboII	GAAGA	2 cut(s)	517, 643
MhlI	GDGCHC	2 cut(s)	433, 691
MluCI	AATT	2 cut(s)	495, 634
MlyI	GAGTC	1 cut(s)	516
MroXI	GAANNNNTTC	1 cut(s)	635
MspA1I	CMGCKG	2 cut(s)	165, 509
MspI	CCGG	3 cut(s)	99, 210, 755
MspR9I	CCNGG	4 cut(s)	112, 260, 714, 755
Mva1269I	GAATGC	1 cut(s)	484
MvaI	CCWGG	3 cut(s)	112, 260, 714
MvnI	CGCG	2 cut(s)	81, 413
MwoI	GCNNNNNNNGC	5 cut(s)	43, 121, 140, 167, 176
NciI	CCSGG	1 cut(s)	755
NcoI	CCATGG	2 cut(s)	24, 264
NdeII	GATC	2 cut(s)	619, 736
NlaIII	CATG	6 cut(s)	28, 37, 199, 268, 409, 601
NlaIV	GGNNCC	5 cut(s)	22, 178, 343, 752, 753
NmuCI	GTSAC	1 cut(s)	151
NspI	RCATGY	1 cut(s)	601
PaeR7I	CTCGAG	1 cut(s)	92
PctI	GAATGC	1 cut(s)	484
PdmI	GAANNNNTTC	1 cut(s)	635
PflMI	CCANNNNNTGG	1 cut(s)	265
PfoI	TCCNGGA	1 cut(s)	712
PkrI	GCNGC	6 cut(s)	145, 167, 181, 191, 415, 508
PleI	GAGTC	1 cut(s)	516
PpsI	GAGTC	1 cut(s)	516
PpuMI	RGGWCCY	1 cut(s)	751
Psp5II	RGGWCCY	1 cut(s)	751
Psp6I	CCWGG	3 cut(s)	110, 258, 712
PspFI	CCCAGC	2 cut(s)	42, 350
PspGI	CCWGG	3 cut(s)	110, 258, 712
PspN4I	GGNNCC	5 cut(s)	22, 178, 343, 752, 753
PspPI	GGNCC	5 cut(s)	247, 302, 461, 716, 751
PspPPI	RGGWCCY	1 cut(s)	751
PstNI	CAGNNNCTG	1 cut(s)	292
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	5 cut(s)	202, 312, 474, 555, 578
RsaNI	GTAC	5 cut(s)	201, 311, 473, 554, 577
SatI	GCNGC	6 cut(s)	144, 166, 180, 190, 414, 507
Sau3AI	GATC	2 cut(s)	619, 736
Sau96I	GGNCC	5 cut(s)	247, 302, 461, 716, 751
SchI	GAGTC	1 cut(s)	516
ScrFI	CCNGG	4 cut(s)	112, 260, 714, 755
SduI	GDGCHC	2 cut(s)	433, 691
SetI	ASST	9 cut(s)	93, 286, 304, 430, 511, 520, 545, 612, 702
SfaNI	GCATC	1 cut(s)	201
Sfr274I	CTCGAG	1 cut(s)	92
SgrAI	CRCCGGYG	1 cut(s)	209
SinI	GGWCC	3 cut(s)	302, 716, 751
SlaI	CTCGAG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	2 cut(s)	495, 634
SsiI	CCGC	7 cut(s)	106, 165, 180, 189, 225, 413, 772
StyD4I	CCNGG	4 cut(s)	110, 258, 712, 753
StyI	CCWWGG	4 cut(s)	24, 264, 610, 719
TaaI	ACNGT	1 cut(s)	157
TaqI	TCGA	4 cut(s)	93, 138, 401, 618
TasI	AATT	2 cut(s)	495, 634
TatI	WGTACW	2 cut(s)	472, 576
TauI	GCSGC	4 cut(s)	168, 182, 192, 416
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	2 cut(s)	143, 506
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	1 cut(s)	429
TspGWI	ACGGA	1 cut(s)	118
Van91I	CCANNNNNTGG	1 cut(s)	265
VneI	GTGCAC	1 cut(s)	687
VpaK11BI	GGWCC	3 cut(s)	302, 716, 751
XapI	RAATTY	2 cut(s)	495, 634
XceI	RCATGY	1 cut(s)	601
XhoI	CTCGAG	1 cut(s)	92
XmnI	GAANNNNTTC	1 cut(s)	635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.