Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010454

Physical Location & Seq

Genomic Coordinates Reverse (-)

846210 .. 848969

Gene Structure 2760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00277410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGAACAAGGAAATCGAGGCACCATGGTGTCCATGCTTCCCCAGCAGAACCAAAACCCTATAGAGCAGTTGCAGGCTCGCTTCAAGCACCTCGAGCATGGCTTCCGCGCCTGGCTCTCCAAGCAGTCCGTCCCCGTCGAGGCCGCCATCGTCACCGTCACCAGCGGCGCTCAGGGCGCCGCTATCGGCGGCATCATGGGTACTCTCACCGGCGACATCTCCTCCACTCTCCCCACTCCTCCGCCTCAGGCCGGCGGCCTCAACCCCAGACCATGGCCTCCTTCAAGCAAGCTCAGGTTTTTATCTGTCTTTTATCTCTCTATAGTTATTTTCCGCTTCAATTTTGGAATTGCTCTTGCTGGGGGTCCATTGATACAAGCTCGGAACTTTGCTGTGATGACGGGTGTCAATGCTGGGATATCTTGTGTTATGAAGAGACTGAGAGGAAAGGAGGATGTCGAGTCGAGCATGGTGGCTGCTTTTGGTTCAGGAGCCATGTTTTCATTGGTGAGTGGTTTTGGTGGCCCCAATCAAGCACAGAATGCACTTACTTCGGGACTTTTCTTTGCACTAGTTCAAGGCGGACTTTTCAAGTTGGGACAAAAGTTTTCCAAAGTACCATCTGCAGATAAAGATGTTTACTATTCTAAAACAAGAAGCATGTTGAGTAACCTTGGCCTTGATCAGTATGAGAAGAATTTCAAGAAAGGGTTGCTAACAGACTACACTTTGCCTCTGCTGAATGATAGTGCTCTTAAGGAGGTGAGAATCCCTCCCGGACCAAGGCTTCTCATTCTTGATCACATTCAGAGGGACCCGGAGTTTCAAGAGAAGCGGAAACATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0006403 GO:0006605 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016031 GO:0016043 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0035927 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051031 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0055085 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1 Tim17

Protein Analysis

282

Amino Acids

30.65

Weight (kDa)

9.92

Isoelectric Point (pI)

32.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	52 - 192	1.1e-10	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49560 AT5G24650
fragaria_vesca	FvH4_7g33330 FvH4_7g33330
malus_domestica	MD01G1231500.v1.1 MD07G1303500.v1.1
prunus_persica	Prupe.2G322200_v2.0.a1 Prupe.2G322200_v2.0.a1
pyrus_communis	pycom01g23950 pycom07g27640
rosa_chinensis	RchiOBHm_Chr1g0383311
rosa_laevigata	RLG00000026114
rosa_multiflora	Rmu_sc0007173.1_g000018 Rmu_sc0014196.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277410
rosa_rugosa	Rorug01G0440400
rosa_samantha	Rh1AG466200 Rh1BG423500 Rh1CG436700 Rh1DG456200
rosa_wichuraiana	Rw1G040630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	20, 176
AccB7I	CCANNNNNTGG	1 cut(s)	273
AccII	CGCG	1 cut(s)	108
AcsI	RAATTY	1 cut(s)	697
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	2 cut(s)	202, 618
AfiI	CCNNNNNNNGG	4 cut(s)	139, 251, 273, 783
AflII	CTTAAG	1 cut(s)	755
AgsI	TTSAA	7 cut(s)	85, 285, 340, 578, 592, 703, 827
AhlI	ACTAGT	1 cut(s)	571
AjnI	CCWGG	1 cut(s)	110
AleI	CACNNNNGTG	1 cut(s)	26
AluBI	AGCT	2 cut(s)	292, 380
AluI	AGCT	2 cut(s)	292, 380
Alw21I	GWGCWC	1 cut(s)	754
Alw26I	GTCTC	1 cut(s)	430
Ama87I	CYCGRG	1 cut(s)	92
AoxI	GGCC	6 cut(s)	141, 249, 256, 275, 523, 676
ApeKI	GCWGC	1 cut(s)	476
ApoI	RAATTY	1 cut(s)	697
Asp700I	GAANNNNTTC	1 cut(s)	698
AspLEI	GCGC	3 cut(s)	110, 170, 179
AspS9I	GGNCC	4 cut(s)	365, 524, 779, 814
AsuC2I	CCSGG	2 cut(s)	777, 818
AsuHPI	GGTGA	5 cut(s)	145, 151, 199, 520, 775
AvaI	CYCGRG	1 cut(s)	92
AvaII	GGWCC	3 cut(s)	365, 779, 814
AxyI	CCTNAGG	1 cut(s)	246
BanI	GGYRCC	2 cut(s)	20, 176
Bbv12I	GWGCWC	1 cut(s)	754
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	2 cut(s)	155, 628
BcgI	CGANNNNNNTGC	2 cut(s)	534, 568
BciT130I	CCWGG	1 cut(s)	112
BclI	TGATCA	2 cut(s)	682, 799
BcnI	CCSGG	2 cut(s)	777, 818
BcoDI	GTCTC	1 cut(s)	430
BcuI	ACTAGT	1 cut(s)	571
BfaI	CTAG	1 cut(s)	572
BfmI	CTRYAG	3 cut(s)	60, 321, 624
BfoI	RGCGCY	2 cut(s)	171, 180
BfrI	CTTAAG	1 cut(s)	755
BisI	GCNGC	6 cut(s)	144, 166, 180, 190, 256, 477
BlsI	GCNGC	6 cut(s)	145, 167, 181, 191, 257, 478
Bme1390I	CCNGG	3 cut(s)	112, 777, 818
Bme18I	GGWCC	3 cut(s)	365, 779, 814
BmeT110I	CYCGRG	1 cut(s)	92
BmgT120I	GGNCC	4 cut(s)	365, 524, 779, 814
BmiI	GGNNCC	7 cut(s)	22, 178, 366, 493, 526, 815, 816
BmrFI	CCNGG	3 cut(s)	112, 777, 818
BmsI	GCATC	1 cut(s)	201
BoxI	GACNNNNGTC	1 cut(s)	404
BplI	GAGNNNNNCTC	2 cut(s)	757, 789
Bpu10I	CCTNAGC	2 cut(s)	171, 293
BpuMI	CCSGG	2 cut(s)	777, 818
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	4 cut(s)	24, 272, 673, 782
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	4 cut(s)	139, 251, 273, 783
Bse118I	RCCGGY	2 cut(s)	209, 251
Bse21I	CCTNAGG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	112
BseDI	CCNNGG	4 cut(s)	24, 272, 673, 782
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	4 cut(s)	139, 251, 273, 783
BseMII	CTCAG	4 cut(s)	185, 260, 307, 431
BseRI	GAGGAG	2 cut(s)	211, 228
BseXI	GCAGC	1 cut(s)	463
BseYI	CCCAGC	3 cut(s)	42, 359, 413
Bsh1236I	CGCG	1 cut(s)	108
BshFI	GGCC	6 cut(s)	143, 251, 258, 277, 525, 678
BshNI	GGYRCC	2 cut(s)	20, 176
BsiHKAI	GWGCWC	1 cut(s)	754
BsiHKCI	CYCGRG	1 cut(s)	92
BsiSI	CCGG	4 cut(s)	210, 252, 777, 818
BslFI	GGGAC	4 cut(s)	116, 570, 612, 827
BslI	CCNNNNNNNGG	4 cut(s)	139, 251, 273, 783
BsmAI	GTCTC	1 cut(s)	430
BsmFI	GGGAC	4 cut(s)	116, 570, 612, 827
BsmI	GAATGC	1 cut(s)	547
BsnI	GGCC	6 cut(s)	143, 251, 258, 277, 525, 678
BsoBI	CYCGRG	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	754
Bsp143I	GATC	2 cut(s)	682, 799
Bsp19I	CCATGG	2 cut(s)	24, 272
BspANI	GGCC	6 cut(s)	143, 251, 258, 277, 525, 678
BspCNI	CTCAG	4 cut(s)	184, 259, 306, 432
BspFNI	CGCG	1 cut(s)	108
BspLI	GGNNCC	7 cut(s)	22, 178, 366, 493, 526, 815, 816
BspMAI	CTGCAG	1 cut(s)	628
BspT107I	GGYRCC	2 cut(s)	20, 176
BspTI	CTTAAG	1 cut(s)	755
BsrFI	RCCGGY	2 cut(s)	209, 251
BssAI	RCCGGY	2 cut(s)	209, 251
BssECI	CCNNGG	4 cut(s)	24, 272, 673, 782
BssMI	GATC	2 cut(s)	682, 799
BssNI	GRCGYC	1 cut(s)	177
BssT1I	CCWWGG	4 cut(s)	24, 272, 673, 782
Bst2UI	CCWGG	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	157
Bst6I	CTCTTC	1 cut(s)	428
BstACI	GRCGYC	1 cut(s)	177
BstAFI	CTTAAG	1 cut(s)	755
BstAPI	GCANNNNNTGC	1 cut(s)	542
BstC8I	GCNNGC	4 cut(s)	75, 79, 253, 290
BstDEI	CTNAG	4 cut(s)	171, 246, 293, 440
BstDSI	CCRYGG	2 cut(s)	24, 272
BstF5I	GGATG	1 cut(s)	460
BstFNI	CGCG	1 cut(s)	108
BstH2I	RGCGCY	2 cut(s)	171, 180
BstHHI	GCGC	3 cut(s)	110, 170, 179
BstKTI	GATC	2 cut(s)	685, 802
BstMAI	GTCTC	1 cut(s)	430
BstMBI	GATC	2 cut(s)	682, 799
BstMWI	GCNNNNNNNGC	6 cut(s)	43, 94, 121, 174, 176, 542
BstNI	CCWGG	1 cut(s)	112
BstNSI	RCATGY	1 cut(s)	664
BstPAI	GACNNNNGTC	1 cut(s)	404
BstSCI	CCNGG	3 cut(s)	110, 775, 816
BstSFI	CTRYAG	3 cut(s)	60, 321, 624
BstUI	CGCG	1 cut(s)	108
BstV1I	GCAGC	1 cut(s)	463
Bsu36I	CCTNAGG	1 cut(s)	246
BsuRI	GGCC	6 cut(s)	143, 251, 258, 277, 525, 678
BtgI	CCRYGG	2 cut(s)	24, 272
BtsCI	GGATG	1 cut(s)	460
Cac8I	GCNNGC	4 cut(s)	75, 79, 253, 290
CfoI	GCGC	3 cut(s)	110, 170, 179
Cfr10I	RCCGGY	2 cut(s)	209, 251
Cfr13I	GGNCC	4 cut(s)	365, 524, 779, 814
Csp6I	GTAC	2 cut(s)	201, 617
CviAII	CATG	8 cut(s)	25, 34, 98, 196, 273, 469, 496, 661
CviQI	GTAC	2 cut(s)	201, 617
DdeI	CTNAG	4 cut(s)	171, 246, 293, 440
DinI	GGCGCC	1 cut(s)	178
DpnI	GATC	2 cut(s)	684, 801
DpnII	GATC	2 cut(s)	682, 799
Eam1104I	CTCTTC	1 cut(s)	428
EarI	CTCTTC	1 cut(s)	428
EciI	GGCGGA	2 cut(s)	231, 597
Eco130I	CCWWGG	4 cut(s)	24, 272, 673, 782
Eco32I	GATATC	1 cut(s)	420
Eco47I	GGWCC	3 cut(s)	365, 779, 814
Eco81I	CCTNAGG	1 cut(s)	246
Eco88I	CYCGRG	1 cut(s)	92
EcoO109I	RGGNCCY	1 cut(s)	814
EcoRII	CCWGG	1 cut(s)	110
EcoRV	GATATC	1 cut(s)	420
EcoT14I	CCWWGG	4 cut(s)	24, 272, 673, 782
EgeI	GGCGCC	1 cut(s)	178
EheI	GGCGCC	1 cut(s)	178
ErhI	CCWWGG	4 cut(s)	24, 272, 673, 782
FaeI	CATG	8 cut(s)	28, 37, 101, 199, 276, 472, 499, 664
FalI	AAGNNNNNCTT	2 cut(s)	570, 602
FaqI	GGGAC	4 cut(s)	116, 570, 612, 827
FatI	CATG	8 cut(s)	24, 33, 97, 195, 272, 468, 495, 660
FbaI	TGATCA	2 cut(s)	682, 799
Fnu4HI	GCNGC	6 cut(s)	144, 166, 180, 190, 256, 477
FokI	GGATG	1 cut(s)	467
Fsp4HI	GCNGC	6 cut(s)	144, 166, 180, 190, 256, 477
FspBI	CTAG	1 cut(s)	572
GlaI	GCGC	3 cut(s)	109, 169, 178
GluI	GCNGC	6 cut(s)	144, 166, 180, 190, 256, 477
GsaI	CCCAGC	3 cut(s)	46, 363, 417
HaeII	RGCGCY	2 cut(s)	171, 180
HaeIII	GGCC	6 cut(s)	143, 251, 258, 277, 525, 678
HapII	CCGG	4 cut(s)	210, 252, 777, 818
HhaI	GCGC	3 cut(s)	110, 170, 179
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	8 cut(s)	28, 37, 101, 199, 276, 472, 499, 664
Hin6I	GCGC	3 cut(s)	108, 168, 177
HinP1I	GCGC	3 cut(s)	108, 168, 177
HinfI	GANTC	2 cut(s)	461, 768
HpaII	CCGG	4 cut(s)	210, 252, 777, 818
HphI	GGTGA	5 cut(s)	145, 151, 199, 520, 775
Hpy166II	GTNNAC	1 cut(s)	640
Hpy188I	TCNGA	2 cut(s)	384, 810
Hpy188III	TCNNGA	5 cut(s)	489, 555, 703, 797, 827
Hpy8I	GTNNAC	1 cut(s)	640
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	1 cut(s)	291
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4V	TGCA	4 cut(s)	73, 545, 569, 626
HpyF10VI	GCNNNNNNNGC	6 cut(s)	43, 94, 121, 174, 176, 542
HpyF3I	CTNAG	4 cut(s)	171, 246, 293, 440
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	8 cut(s)	28, 37, 101, 199, 276, 472, 499, 664
HspAI	GCGC	3 cut(s)	108, 168, 177
KasI	GGCGCC	1 cut(s)	176
KflI	GGGWCCC	1 cut(s)	814
KroI	GCCGGC	1 cut(s)	251
KroNI	GCCGGC	1 cut(s)	253
Ksp22I	TGATCA	2 cut(s)	682, 799
Kzo9I	GATC	2 cut(s)	682, 799
LmnI	GCTCC	1 cut(s)	491
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	1 cut(s)	201
MaeI	CTAG	1 cut(s)	572
MaeIII	GTNAC	3 cut(s)	151, 157, 668
MalI	GATC	2 cut(s)	684, 801
MboI	GATC	2 cut(s)	682, 799
MboII	GAAGA	2 cut(s)	445, 706
MhlI	GDGCHC	1 cut(s)	754
MluCI	AATT	3 cut(s)	340, 348, 697
Mly113I	GGCGCC	1 cut(s)	177
MlyI	GAGTC	1 cut(s)	470
MroNI	GCCGGC	1 cut(s)	251
MroXI	GAANNNNTTC	1 cut(s)	698
MseI	TTAA	1 cut(s)	756
MslI	CAYNNNNRTG	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	165
MspCI	CTTAAG	1 cut(s)	755
MspI	CCGG	4 cut(s)	210, 252, 777, 818
MspR9I	CCNGG	3 cut(s)	112, 777, 818
Mva1269I	GAATGC	1 cut(s)	547
MvaI	CCWGG	1 cut(s)	112
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	6 cut(s)	43, 94, 121, 174, 176, 542
NaeI	GCCGGC	1 cut(s)	253
NarI	GGCGCC	1 cut(s)	177
NciI	CCSGG	2 cut(s)	777, 818
NcoI	CCATGG	2 cut(s)	24, 272
NdeII	GATC	2 cut(s)	682, 799
NgoMIV	GCCGGC	1 cut(s)	251
NlaIII	CATG	8 cut(s)	28, 37, 101, 199, 276, 472, 499, 664
NlaIV	GGNNCC	7 cut(s)	22, 178, 366, 493, 526, 815, 816
NmuCI	GTSAC	2 cut(s)	151, 157
NspI	RCATGY	1 cut(s)	664
OliI	CACNNNNGTG	1 cut(s)	26
PaeR7I	CTCGAG	1 cut(s)	92
PctI	GAATGC	1 cut(s)	547
PdiI	GCCGGC	1 cut(s)	253
PdmI	GAANNNNTTC	1 cut(s)	698
PfeI	GAWTC	1 cut(s)	768
PflMI	CCANNNNNTGG	1 cut(s)	273
PfoI	TCCNGGA	1 cut(s)	775
PkrI	GCNGC	6 cut(s)	145, 167, 181, 191, 257, 478
PleI	GAGTC	1 cut(s)	469
PluTI	GGCGCC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	469
PpuMI	RGGWCCY	1 cut(s)	814
PshAI	GACNNNNGTC	1 cut(s)	404
Psp5II	RGGWCCY	1 cut(s)	814
Psp6I	CCWGG	1 cut(s)	110
PspFI	CCCAGC	3 cut(s)	42, 359, 413
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	7 cut(s)	22, 178, 366, 493, 526, 815, 816
PspPI	GGNCC	4 cut(s)	365, 524, 779, 814
PspPPI	RGGWCCY	1 cut(s)	814
PspXI	VCTCGAGB	1 cut(s)	92
PstI	CTGCAG	1 cut(s)	628
RsaI	GTAC	2 cut(s)	202, 618
RsaNI	GTAC	2 cut(s)	201, 617
RseI	CAYNNNNRTG	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	756
SatI	GCNGC	6 cut(s)	144, 166, 180, 190, 256, 477
Sau3AI	GATC	2 cut(s)	682, 799
Sau96I	GGNCC	4 cut(s)	365, 524, 779, 814
SchI	GAGTC	1 cut(s)	470
ScrFI	CCNGG	3 cut(s)	112, 777, 818
SduI	GDGCHC	1 cut(s)	754
SetI	ASST	6 cut(s)	93, 294, 299, 382, 675, 765
SfaNI	GCATC	1 cut(s)	201
SfcI	CTRYAG	3 cut(s)	60, 321, 624
SfoI	GGCGCC	1 cut(s)	178
Sfr274I	CTCGAG	1 cut(s)	92
SgrAI	CRCCGGYG	1 cut(s)	209
SinI	GGWCC	3 cut(s)	365, 779, 814
SlaI	CTCGAG	1 cut(s)	92
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	2 cut(s)	92, 755
SmoI	CTYRAG	2 cut(s)	92, 755
SpeI	ACTAGT	1 cut(s)	571
Sse9I	AATT	3 cut(s)	340, 348, 697
SspDI	GGCGCC	1 cut(s)	176
SspMI	CTAG	1 cut(s)	572
StyD4I	CCNGG	3 cut(s)	110, 775, 816
StyI	CCWWGG	4 cut(s)	24, 272, 673, 782
TaaI	ACNGT	1 cut(s)	157
TaqI	TCGA	5 cut(s)	16, 93, 138, 459, 464
TasI	AATT	3 cut(s)	340, 348, 697
TauI	GCSGC	5 cut(s)	146, 168, 182, 192, 258
TfiI	GAWTC	1 cut(s)	768
Tru1I	TTAA	1 cut(s)	756
Tru9I	TTAA	1 cut(s)	756
TseFI	GTSAC	2 cut(s)	151, 157
TseI	GCWGC	1 cut(s)	476
Tsp45I	GTSAC	2 cut(s)	151, 157
TspDTI	ATGAA	2 cut(s)	446, 492
TspGWI	ACGGA	1 cut(s)	118
Van91I	CCANNNNNTGG	1 cut(s)	273
Vha464I	CTTAAG	1 cut(s)	755
VpaK11BI	GGWCC	3 cut(s)	365, 779, 814
XapI	RAATTY	1 cut(s)	697
XceI	RCATGY	1 cut(s)	664
XcmI	CCANNNNNNNNNTGG	1 cut(s)	502
XhoI	CTCGAG	1 cut(s)	92
XmnI	GAANNNNTTC	1 cut(s)	698
XspI	CTAG	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.