Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010454

Physical Location & Seq

Genomic Coordinates Forward (+)

8437024 .. 8439104

Gene Structure 2081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G24650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGGGAAAGACGGAGAAGGAGACAAGAAGCGAGAAACAATGGCGGTGATGAGCTTAATGAAGGATCAACAGAATCCAATTCAACAGTTTCAAGTCAAATTCAAGGAGATTGAGACTGGTTTCAAGTCGTGGTTATCAAAACAGAAGTTACCGGTGGAAGCCGCCGTTGTCACGGCCATGGGTGGTGTTCAGGGAGCTTTTATCGGTGGTTTAATGGGAACTTTATCTCCTGAAATGCCTCAGGCTGGTATTGACCCTCAAGCTATGGCTTCGCTAAAGCAAACTCAGGCTCTTGTTGGTGGGCCTTTGGTTCAAGCTCGGAACTTTGCTGCTATAACTGGTGTTAATGCTGGTATTGCTTGTGTTATGAAACGGATTAGAGGCAAGGAGGATTTAGAATCTGCTGTGGTCGCAGCATTCGGATCTGGAGTTGCATATTCTCTTGTGAGCGCAGGATTACAAGGACAGCCTATGAATGCAATCACCACTGCTGCTGGTTTCGCTGTTTTTCAAGGAGTGTTTTTCAAGTTGGGTGAAAGGTTCTCTAAACCAAGTGTTGAAGATCCATATTACACCCGGGGAAGATCTATGTTGTTGAAACTGGGTCTAGAGAAGTATGAGAAGAACTTCAAGAAAGGTTTATTAGCTGACCCAACTCTGCCATTGCTCACTGATAGCGCGCTAAGAGACGTGAGCATCCCGCCTGGACCAAGGCTACTGATACTTGATCACATCCAAAGGGACCCTGAGCTAAAGGGCAAGCGGGGAAGTCGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0006403 GO:0006605 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016031 GO:0016043 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0035927 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051031 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0055085 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1 Tim17

Protein Analysis

259

Amino Acids

27.77

Weight (kDa)

9.6

Isoelectric Point (pI)

31.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	53 - 170	1e-14	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49560 AT5G24650
fragaria_vesca	FvH4_7g33330 FvH4_7g33330
malus_domestica	MD01G1231500.v1.1 MD07G1303500.v1.1
prunus_persica	Prupe.2G322200_v2.0.a1 Prupe.2G322200_v2.0.a1
pyrus_communis	pycom01g23950 pycom07g27640
rosa_chinensis	RchiOBHm_Chr1g0383311
rosa_laevigata	RLG00000026114
rosa_multiflora	Rmu_sc0007173.1_g000018 Rmu_sc0014196.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277410
rosa_rugosa	Rorug01G0440400
rosa_samantha	Rh1AG466200 Rh1BG423500 Rh1CG436700 Rh1DG456200
rosa_wichuraiana	Rw1G040630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	680
AciI	CCGC	4 cut(s)	44, 162, 701, 763
AclWI	GGATC	3 cut(s)	72, 430, 557
AcoI	YGGCCR	1 cut(s)	174
AcsI	RAATTY	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	245
AgeI	ACCGGT	1 cut(s)	151
AjiI	CACGTC	1 cut(s)	691
AjnI	CCWGG	1 cut(s)	703
AloI	GAACNNNNNNTCC	2 cut(s)	211, 243
AluBI	AGCT	6 cut(s)	54, 197, 263, 317, 647, 751
AluI	AGCT	6 cut(s)	54, 197, 263, 317, 647, 751
Alw26I	GTCTC	3 cut(s)	15, 107, 681
AlwI	GGATC	3 cut(s)	72, 430, 557
Ama87I	CYCGRG	1 cut(s)	576
AoxI	GGCC	2 cut(s)	174, 302
ApeKI	GCWGC	3 cut(s)	329, 413, 491
ApoI	RAATTY	1 cut(s)	98
AsiGI	ACCGGT	1 cut(s)	151
Asp700I	GAANNNNTTC	1 cut(s)	626
AspLEI	GCGC	3 cut(s)	452, 680, 682
AspS9I	GGNCC	3 cut(s)	302, 707, 742
AsuC2I	CCSGG	2 cut(s)	577, 578
AsuHPI	GGTGA	3 cut(s)	58, 475, 545
AvaI	CYCGRG	1 cut(s)	576
AvaII	GGWCC	2 cut(s)	707, 742
AxyI	CCTNAGG	1 cut(s)	240
BbvI	GCAGC	3 cut(s)	316, 425, 478
BceAI	ACGGC	2 cut(s)	149, 189
BciT130I	CCWGG	1 cut(s)	705
BclI	TGATCA	1 cut(s)	727
BcnI	CCSGG	2 cut(s)	577, 578
BcoDI	GTCTC	3 cut(s)	15, 107, 681
BfaI	CTAG	1 cut(s)	608
BglII	AGATCT	1 cut(s)	584
BisI	GCNGC	4 cut(s)	162, 330, 414, 492
BlsI	GCNGC	4 cut(s)	163, 331, 415, 493
Bme1390I	CCNGG	3 cut(s)	577, 578, 705
Bme18I	GGWCC	2 cut(s)	707, 742
BmeT110I	CYCGRG	1 cut(s)	576
BmgBI	CACGTC	1 cut(s)	691
BmgT120I	GGNCC	3 cut(s)	302, 707, 742
BmiI	GGNNCC	2 cut(s)	743, 744
BmrFI	CCNGG	3 cut(s)	577, 578, 705
BmrI	ACTGGG	1 cut(s)	611
BmsI	GCATC	1 cut(s)	705
BmuI	ACTGGG	1 cut(s)	611
BpmI	CTGGAG	1 cut(s)	447
Bpu10I	CCTNAGC	1 cut(s)	747
BpuEI	CTTGAG	1 cut(s)	243
BpuMI	CCSGG	2 cut(s)	577, 578
BsaJI	CCNNGG	4 cut(s)	177, 576, 577, 710
BsaWI	WCCGGW	1 cut(s)	151
BsaXI	ACNNNNNCTCC	2 cut(s)	211, 241
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
Bse118I	RCCGGY	1 cut(s)	151
Bse1I	ACTGG	3 cut(s)	121, 343, 606
Bse21I	CCTNAGG	1 cut(s)	240
Bse3DI	GCAATG	1 cut(s)	662
BseBI	CCWGG	1 cut(s)	705
BseDI	CCNNGG	4 cut(s)	177, 576, 577, 710
BseGI	GGATG	2 cut(s)	696, 732
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseMI	GCAATG	1 cut(s)	662
BseMII	CTCAG	3 cut(s)	254, 299, 738
BseNI	ACTGG	3 cut(s)	121, 343, 606
BsePI	GCGCGC	1 cut(s)	678
BseXI	GCAGC	3 cut(s)	316, 425, 478
Bsh1236I	CGCG	1 cut(s)	680
BshFI	GGCC	2 cut(s)	176, 304
BshTI	ACCGGT	1 cut(s)	151
BsiHKCI	CYCGRG	1 cut(s)	576
BsiSI	CCGG	2 cut(s)	152, 577
BslFI	GGGAC	1 cut(s)	755
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmAI	GTCTC	3 cut(s)	15, 107, 681
BsmBI	CGTCTC	1 cut(s)	681
BsmFI	GGGAC	1 cut(s)	755
BsmI	GAATGC	2 cut(s)	416, 481
BsnI	GGCC	2 cut(s)	176, 304
BsoBI	CYCGRG	1 cut(s)	576
Bsp143I	GATC	5 cut(s)	64, 422, 562, 584, 727
Bsp19I	CCATGG	1 cut(s)	177
BspACI	CCGC	4 cut(s)	44, 162, 701, 763
BspANI	GGCC	2 cut(s)	176, 304
BspCNI	CTCAG	3 cut(s)	253, 298, 739
BspFNI	CGCG	1 cut(s)	680
BspLI	GGNNCC	2 cut(s)	743, 744
BspPI	GGATC	3 cut(s)	72, 430, 557
BsrDI	GCAATG	1 cut(s)	662
BsrFI	RCCGGY	1 cut(s)	151
BsrI	ACTGG	3 cut(s)	121, 343, 606
BssAI	RCCGGY	1 cut(s)	151
BssECI	CCNNGG	4 cut(s)	177, 576, 577, 710
BssHII	GCGCGC	1 cut(s)	678
BssMI	GATC	5 cut(s)	64, 422, 562, 584, 727
BssT1I	CCWWGG	2 cut(s)	177, 710
Bst2UI	CCWGG	1 cut(s)	705
Bst4CI	ACNGT	1 cut(s)	87
BstC8I	GCNNGC	2 cut(s)	680, 761
BstDEI	CTNAG	4 cut(s)	240, 285, 683, 747
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	2 cut(s)	696, 732
BstFNI	CGCG	1 cut(s)	680
BstHHI	GCGC	3 cut(s)	452, 680, 682
BstKTI	GATC	5 cut(s)	67, 425, 565, 587, 730
BstMAI	GTCTC	3 cut(s)	15, 107, 681
BstMBI	GATC	5 cut(s)	64, 422, 562, 584, 727
BstMWI	GCNNNNNNNGC	3 cut(s)	356, 410, 500
BstNI	CCWGG	1 cut(s)	705
BstSCI	CCNGG	3 cut(s)	575, 576, 703
BstUI	CGCG	1 cut(s)	680
BstV1I	GCAGC	3 cut(s)	316, 425, 478
BstX2I	RGATCY	3 cut(s)	422, 562, 584
BstYI	RGATCY	3 cut(s)	422, 562, 584
Bsu36I	CCTNAGG	1 cut(s)	240
BsuRI	GGCC	2 cut(s)	176, 304
BtgI	CCRYGG	1 cut(s)	177
BtrI	CACGTC	1 cut(s)	691
BtsCI	GGATG	2 cut(s)	696, 732
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	2 cut(s)	486, 669
Cac8I	GCNNGC	2 cut(s)	680, 761
CfoI	GCGC	3 cut(s)	452, 680, 682
Cfr10I	RCCGGY	1 cut(s)	151
Cfr13I	GGNCC	3 cut(s)	302, 707, 742
Cfr9I	CCCGGG	1 cut(s)	576
CspAI	ACCGGT	1 cut(s)	151
CviAII	CATG	1 cut(s)	178
DdeI	CTNAG	4 cut(s)	240, 285, 683, 747
DpnI	GATC	5 cut(s)	66, 424, 564, 586, 729
DpnII	GATC	5 cut(s)	64, 422, 562, 584, 727
EaeI	YGGCCR	1 cut(s)	174
Eco130I	CCWWGG	2 cut(s)	177, 710
Eco47I	GGWCC	2 cut(s)	707, 742
Eco81I	CCTNAGG	1 cut(s)	240
Eco88I	CYCGRG	1 cut(s)	576
EcoO109I	RGGNCCY	1 cut(s)	742
EcoRII	CCWGG	1 cut(s)	703
EcoT14I	CCWWGG	2 cut(s)	177, 710
ErhI	CCWWGG	2 cut(s)	177, 710
Esp3I	CGTCTC	1 cut(s)	681
FaeI	CATG	1 cut(s)	181
FaiI	YATR	9 cut(s)	179, 266, 335, 368, 436, 473, 568, 590, 618
FaqI	GGGAC	1 cut(s)	755
FatI	CATG	1 cut(s)	177
FauI	CCCGC	2 cut(s)	708, 756
FbaI	TGATCA	1 cut(s)	727
Fnu4HI	GCNGC	4 cut(s)	162, 330, 414, 492
FokI	GGATG	2 cut(s)	683, 719
Fsp4HI	GCNGC	4 cut(s)	162, 330, 414, 492
FspBI	CTAG	1 cut(s)	608
GlaI	GCGC	3 cut(s)	451, 679, 681
GluI	GCNGC	4 cut(s)	162, 330, 414, 492
GsuI	CTGGAG	1 cut(s)	447
HaeIII	GGCC	2 cut(s)	176, 304
HapII	CCGG	2 cut(s)	152, 577
HhaI	GCGC	3 cut(s)	452, 680, 682
Hin1II	CATG	1 cut(s)	181
Hin6I	GCGC	3 cut(s)	450, 678, 680
HinP1I	GCGC	3 cut(s)	450, 678, 680
HinfI	GANTC	2 cut(s)	73, 398
HpaII	CCGG	2 cut(s)	152, 577
HphI	GGTGA	3 cut(s)	58, 475, 545
Hpy188I	TCNGA	2 cut(s)	321, 422
Hpy188III	TCNNGA	4 cut(s)	230, 426, 608, 631
HpyAV	CCTTC	2 cut(s)	11, 55
HpyCH4III	ACNGT	1 cut(s)	87
HpyCH4IV	ACGT	1 cut(s)	690
HpyCH4V	TGCA	2 cut(s)	434, 479
HpyF10VI	GCNNNNNNNGC	3 cut(s)	356, 410, 500
HpyF3I	CTNAG	4 cut(s)	240, 285, 683, 747
HpySE526I	ACGT	1 cut(s)	690
Hsp92II	CATG	1 cut(s)	181
HspAI	GCGC	3 cut(s)	450, 678, 680
KflI	GGGWCCC	1 cut(s)	742
Ksp22I	TGATCA	1 cut(s)	727
Kzo9I	GATC	5 cut(s)	64, 422, 562, 584, 727
LmnI	GCTCC	1 cut(s)	194
Lsp1109I	GCAGC	3 cut(s)	316, 425, 478
LweI	GCATC	1 cut(s)	705
MaeI	CTAG	1 cut(s)	608
MaeII	ACGT	1 cut(s)	690
MaeIII	GTNAC	2 cut(s)	147, 169
MalI	GATC	5 cut(s)	66, 424, 564, 586, 729
MboI	GATC	5 cut(s)	64, 422, 562, 584, 727
MboII	GAAGA	3 cut(s)	572, 594, 634
MflI	RGATCY	3 cut(s)	422, 562, 584
MluCI	AATT	2 cut(s)	78, 98
MnlI	CCTC	4 cut(s)	249, 267, 374, 382
MroXI	GAANNNNTTC	1 cut(s)	626
MseI	TTAA	3 cut(s)	56, 212, 345
MslI	CAYNNNNRTG	1 cut(s)	176
MspI	CCGG	2 cut(s)	152, 577
MspR9I	CCNGG	3 cut(s)	577, 578, 705
Mva1269I	GAATGC	2 cut(s)	416, 481
MvaI	CCWGG	1 cut(s)	705
MvnI	CGCG	1 cut(s)	680
MwoI	GCNNNNNNNGC	3 cut(s)	356, 410, 500
NciI	CCSGG	2 cut(s)	577, 578
NcoI	CCATGG	1 cut(s)	177
NdeII	GATC	5 cut(s)	64, 422, 562, 584, 727
NlaIII	CATG	1 cut(s)	181
NlaIV	GGNNCC	2 cut(s)	743, 744
NmuCI	GTSAC	1 cut(s)	169
PauI	GCGCGC	1 cut(s)	678
PctI	GAATGC	2 cut(s)	416, 481
PdmI	GAANNNNTTC	1 cut(s)	626
PfeI	GAWTC	2 cut(s)	73, 398
PinAI	ACCGGT	1 cut(s)	151
PkrI	GCNGC	4 cut(s)	163, 331, 415, 493
PpuMI	RGGWCCY	1 cut(s)	742
Psp5II	RGGWCCY	1 cut(s)	742
Psp6I	CCWGG	1 cut(s)	703
PspGI	CCWGG	1 cut(s)	703
PspN4I	GGNNCC	2 cut(s)	743, 744
PspPI	GGNCC	3 cut(s)	302, 707, 742
PspPPI	RGGWCCY	1 cut(s)	742
PsuI	RGATCY	3 cut(s)	422, 562, 584
PteI	GCGCGC	1 cut(s)	678
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	3 cut(s)	56, 212, 345
SatI	GCNGC	4 cut(s)	162, 330, 414, 492
Sau3AI	GATC	5 cut(s)	64, 422, 562, 584, 727
Sau96I	GGNCC	3 cut(s)	302, 707, 742
ScrFI	CCNGG	3 cut(s)	577, 578, 705
SetI	ASST	9 cut(s)	56, 199, 265, 319, 542, 640, 649, 693, 753
SfaNI	GCATC	1 cut(s)	705
SinI	GGWCC	2 cut(s)	707, 742
SmaI	CCCGGG	1 cut(s)	578
SmiMI	CAYNNNNRTG	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	258
SmoI	CTYRAG	1 cut(s)	258
Sse9I	AATT	2 cut(s)	78, 98
SsiI	CCGC	4 cut(s)	44, 162, 701, 763
SspMI	CTAG	1 cut(s)	608
StyD4I	CCNGG	3 cut(s)	575, 576, 703
StyI	CCWWGG	2 cut(s)	177, 710
TaaI	ACNGT	1 cut(s)	87
TaiI	ACGT	1 cut(s)	693
TasI	AATT	2 cut(s)	78, 98
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	2 cut(s)	73, 398
Tru1I	TTAA	3 cut(s)	56, 212, 345
Tru9I	TTAA	3 cut(s)	56, 212, 345
TscAI	CASTG	2 cut(s)	493, 676
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	3 cut(s)	329, 413, 491
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	3 cut(s)	74, 383, 488
TspGWI	ACGGA	2 cut(s)	27, 388
TspMI	CCCGGG	1 cut(s)	576
TspRI	CASTG	2 cut(s)	493, 676
VpaK11BI	GGWCC	2 cut(s)	707, 742
XapI	RAATTY	1 cut(s)	98
XbaI	TCTAGA	1 cut(s)	607
XmaI	CCCGGG	1 cut(s)	576
XmnI	GAANNNNTTC	1 cut(s)	626
XspI	CTAG	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.