RLG00000026114

Mitochondrial import inner membrane translocase subunit

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
625935 .. 628402
2468 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026114

Sequence Viewer

Length: 792 bp
ATGGAACAAGGAAATCGAGGCACCATGGTGTCCATGCTTCCCCAGCAGAACCAAAACCCTATAGAGCAGTTGCAGGCTCGCTTCAAGCACCTCGAGCATGGCTTCCGCGCCTGGCTCTCCAAGCAGTCCGTCCCCGTCGAGGCCGCCATCGTCACCGTCACCAGCGGCGCTCAGGGCGCCGCTATCGGCGGCATCATGGGTACTCTCACTGGCGACATCTCCTCCACTATCCCCACTCCTCCGCCTCAGGCAGGCGGCCTCAACCCCCAGACCATGGCCTCCTTCAAGCAAGCTCAGGCCCTTGCTGGGGGTCCATGGATACAAGCTCGGAACTTTGCTGTGATGACGGGTGTCAATGCTGGGATATCTTGTGTTATGAAGAGACTGAGAGGAAAGGAGGATGTCGAGTCGAGCATGGTGGCTGCTTTTGGTTCAGGAGCCCTGTTTTCATTGGTGAGTGGTTTTGGTGGCCCCAATCAAGCACAGAATGCACTTACTTCGGGACTTTTCTTTGCACTAGTTCAAGGCGGACTTTTCAAGTTGGGACAAAAGTTTTCCAAAGTACCATCTGCAGATAAAGATGTTTACTATTCTAAAACAAGAAGCATGTTGAGTAACCTTGGCCTCGATCAGTATGAGAAGAATTTCAAGAAAGGGTTGCTAACAGACTACACTTTGCCTCTGCTGAATGATAGTGCTCTTAAGGAGGTGAGAATCCCTCCCGGACCGAGGCTTCTCATTCTTGATCACATTCAGAGGGACCCGGAGTTTCAAGAGAAGCGGAAACATTAG

Protein Analysis

264

Amino Acids

28.33

Weight (kDa)

9.65

Isoelectric Point (pI)

30.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim17 PF02466 52 - 174 2e-14 Tim17/Tim22/Tim23/Pmp24 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 20, 176
AccB7I CCANNNNNTGG 1 cut(s) 274
AccII CGCG 1 cut(s) 108
AciI CCGC 9 cut(s) 106, 144, 165, 180, 189, 242, 255, 528, 781
AcsI RAATTY 1 cut(s) 643
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 2 cut(s) 202, 564
AfiI CCNNNNNNNGG 6 cut(s) 139, 251, 274, 306, 307, 729
AflII CTTAAG 1 cut(s) 701
AgsI TTSAA 6 cut(s) 85, 286, 524, 538, 649, 773
AhlI ACTAGT 1 cut(s) 517
AjnI CCWGG 1 cut(s) 110
AleI CACNNNNGTG 1 cut(s) 26
AluBI AGCT 2 cut(s) 293, 326
AluI AGCT 2 cut(s) 293, 326
Alw21I GWGCWC 1 cut(s) 700
Alw26I GTCTC 1 cut(s) 376
Ama87I CYCGRG 1 cut(s) 92
AoxI GGCC 6 cut(s) 141, 256, 276, 297, 469, 622
ApeKI GCWGC 1 cut(s) 422
ApoI RAATTY 1 cut(s) 643
Asp700I GAANNNNTTC 1 cut(s) 644
AspLEI GCGC 3 cut(s) 110, 170, 179
AspS9I GGNCC 5 cut(s) 298, 311, 470, 725, 760
AsuC2I CCSGG 2 cut(s) 723, 764
AsuHPI GGTGA 4 cut(s) 145, 151, 466, 721
AvaI CYCGRG 1 cut(s) 92
AvaII GGWCC 3 cut(s) 311, 725, 760
AxyI CCTNAGG 1 cut(s) 246
BanI GGYRCC 2 cut(s) 20, 176
BanII GRGCYC 1 cut(s) 442
Bbv12I GWGCWC 1 cut(s) 700
BbvI GCAGC 1 cut(s) 409
BccI CCATC 2 cut(s) 155, 574
BcgI CGANNNNNNTGC 2 cut(s) 480, 514
BciT130I CCWGG 1 cut(s) 112
BciVI GTATCC 1 cut(s) 312
BclI TGATCA 1 cut(s) 745
BcnI CCSGG 2 cut(s) 723, 764
BcoDI GTCTC 1 cut(s) 376
BcuI ACTAGT 1 cut(s) 517
BfaI CTAG 1 cut(s) 518
BfmI CTRYAG 2 cut(s) 60, 570
BfoI RGCGCY 2 cut(s) 171, 180
BfrI CTTAAG 1 cut(s) 701
BfuI GTATCC 1 cut(s) 312
BisI GCNGC 6 cut(s) 144, 166, 180, 190, 256, 423
BlsI GCNGC 6 cut(s) 145, 167, 181, 191, 257, 424
Bme1390I CCNGG 3 cut(s) 112, 723, 764
Bme18I GGWCC 3 cut(s) 311, 725, 760
BmeT110I CYCGRG 1 cut(s) 92
BmgT120I GGNCC 5 cut(s) 298, 311, 470, 725, 760
BmiI GGNNCC 7 cut(s) 22, 178, 312, 439, 472, 761, 762
BmrFI CCNGG 3 cut(s) 112, 723, 764
BmsI GCATC 1 cut(s) 201
BoxI GACNNNNGTC 1 cut(s) 350
BplI GAGNNNNNCTC 2 cut(s) 703, 735
Bpu10I CCTNAGC 2 cut(s) 171, 294
BpuMI CCSGG 2 cut(s) 723, 764
BsaHI GRCGYC 1 cut(s) 177
BsaJI CCNNGG 5 cut(s) 24, 273, 314, 619, 728
BsaXI ACNNNNNCTCC 2 cut(s) 206, 236
Bsc4I CCNNNNNNNGG 6 cut(s) 139, 251, 274, 306, 307, 729
Bse1I ACTGG 1 cut(s) 214
Bse21I CCTNAGG 1 cut(s) 246
BseBI CCWGG 1 cut(s) 112
BseDI CCNNGG 5 cut(s) 24, 273, 314, 619, 728
BseGI GGATG 1 cut(s) 406
BseLI CCNNNNNNNGG 6 cut(s) 139, 251, 274, 306, 307, 729
BseMII CTCAG 4 cut(s) 185, 260, 308, 377
BseNI ACTGG 1 cut(s) 214
BseRI GAGGAG 2 cut(s) 211, 228
BseXI GCAGC 1 cut(s) 409
BseYI CCCAGC 3 cut(s) 42, 305, 359
Bsh1236I CGCG 1 cut(s) 108
BshFI GGCC 6 cut(s) 143, 258, 278, 299, 471, 624
BshNI GGYRCC 2 cut(s) 20, 176
BsiHKAI GWGCWC 1 cut(s) 700
BsiHKCI CYCGRG 1 cut(s) 92
BsiSI CCGG 2 cut(s) 723, 764
BslFI GGGAC 4 cut(s) 116, 516, 558, 773
BslI CCNNNNNNNGG 6 cut(s) 139, 251, 274, 306, 307, 729
BsmAI GTCTC 1 cut(s) 376
BsmFI GGGAC 4 cut(s) 116, 516, 558, 773
BsmI GAATGC 1 cut(s) 493
BsnI GGCC 6 cut(s) 143, 258, 278, 299, 471, 624
BsoBI CYCGRG 1 cut(s) 92
Bsp1286I GDGCHC 2 cut(s) 442, 700
Bsp143I GATC 2 cut(s) 628, 745
Bsp19I CCATGG 3 cut(s) 24, 273, 314
BspACI CCGC 9 cut(s) 106, 144, 165, 180, 189, 242, 255, 528, 781
BspANI GGCC 6 cut(s) 143, 258, 278, 299, 471, 624
BspCNI CTCAG 4 cut(s) 184, 259, 307, 378
BspFNI CGCG 1 cut(s) 108
BspLI GGNNCC 7 cut(s) 22, 178, 312, 439, 472, 761, 762
BspMAI CTGCAG 1 cut(s) 574
BspT107I GGYRCC 2 cut(s) 20, 176
BspTI CTTAAG 1 cut(s) 701
BsrI ACTGG 1 cut(s) 214
BssECI CCNNGG 5 cut(s) 24, 273, 314, 619, 728
BssMI GATC 2 cut(s) 628, 745
BssNI GRCGYC 1 cut(s) 177
BssT1I CCWWGG 4 cut(s) 24, 273, 314, 619
Bst2UI CCWGG 1 cut(s) 112
Bst4CI ACNGT 1 cut(s) 157
Bst6I CTCTTC 1 cut(s) 374
BstACI GRCGYC 1 cut(s) 177
BstAFI CTTAAG 1 cut(s) 701
BstAPI GCANNNNNTGC 1 cut(s) 488
BstC8I GCNNGC 4 cut(s) 75, 79, 253, 291
BstDEI CTNAG 4 cut(s) 171, 246, 294, 386
BstDSI CCRYGG 3 cut(s) 24, 273, 314
BstENI CCTNNNNNAGG 1 cut(s) 249
BstF5I GGATG 1 cut(s) 406
BstFNI CGCG 1 cut(s) 108
BstH2I RGCGCY 2 cut(s) 171, 180
BstHHI GCGC 3 cut(s) 110, 170, 179
BstKTI GATC 2 cut(s) 631, 748
BstMAI GTCTC 1 cut(s) 376
BstMBI GATC 2 cut(s) 628, 745
BstMWI GCNNNNNNNGC 6 cut(s) 43, 94, 121, 174, 176, 488
BstNI CCWGG 1 cut(s) 112
BstNSI RCATGY 1 cut(s) 610
BstPAI GACNNNNGTC 1 cut(s) 350
BstSCI CCNGG 3 cut(s) 110, 721, 762
BstSFI CTRYAG 2 cut(s) 60, 570
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 409
Bsu36I CCTNAGG 1 cut(s) 246
BsuI GTATCC 1 cut(s) 312
BsuRI GGCC 6 cut(s) 143, 258, 278, 299, 471, 624
BtgI CCRYGG 3 cut(s) 24, 273, 314
BtsCI GGATG 1 cut(s) 406
BtsIMutI CAGTG 1 cut(s) 207
Cac8I GCNNGC 4 cut(s) 75, 79, 253, 291
CfoI GCGC 3 cut(s) 110, 170, 179
Cfr13I GGNCC 5 cut(s) 298, 311, 470, 725, 760
CpoI CGGWCCG 1 cut(s) 725
Csp6I GTAC 2 cut(s) 201, 563
CspI CGGWCCG 1 cut(s) 725
CviAII CATG 8 cut(s) 25, 34, 98, 196, 274, 315, 415, 607
CviQI GTAC 2 cut(s) 201, 563
DdeI CTNAG 4 cut(s) 171, 246, 294, 386
DinI GGCGCC 1 cut(s) 178
DpnI GATC 2 cut(s) 630, 747
DpnII GATC 2 cut(s) 628, 745
Eam1104I CTCTTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 374
EciI GGCGGA 2 cut(s) 231, 543
Eco130I CCWWGG 4 cut(s) 24, 273, 314, 619
Eco24I GRGCYC 1 cut(s) 442
Eco32I GATATC 1 cut(s) 366
Eco47I GGWCC 3 cut(s) 311, 725, 760
Eco81I CCTNAGG 1 cut(s) 246
Eco88I CYCGRG 1 cut(s) 92
EcoNI CCTNNNNNAGG 1 cut(s) 249
EcoO109I RGGNCCY 2 cut(s) 298, 760
EcoRII CCWGG 1 cut(s) 110
EcoRV GATATC 1 cut(s) 366
EcoT14I CCWWGG 4 cut(s) 24, 273, 314, 619
EcoT38I GRGCYC 1 cut(s) 442
EgeI GGCGCC 1 cut(s) 178
EheI GGCGCC 1 cut(s) 178
ErhI CCWWGG 4 cut(s) 24, 273, 314, 619
FaeI CATG 8 cut(s) 28, 37, 101, 199, 277, 318, 418, 610
FalI AAGNNNNNCTT 2 cut(s) 516, 548
FaqI GGGAC 4 cut(s) 116, 516, 558, 773
FatI CATG 8 cut(s) 24, 33, 97, 195, 273, 314, 414, 606
FbaI TGATCA 1 cut(s) 745
Fnu4HI GCNGC 6 cut(s) 144, 166, 180, 190, 256, 423
FokI GGATG 1 cut(s) 413
FriOI GRGCYC 1 cut(s) 442
Fsp4HI GCNGC 6 cut(s) 144, 166, 180, 190, 256, 423
FspBI CTAG 1 cut(s) 518
GlaI GCGC 3 cut(s) 109, 169, 178
GluI GCNGC 6 cut(s) 144, 166, 180, 190, 256, 423
GsaI CCCAGC 3 cut(s) 46, 309, 363
HaeII RGCGCY 2 cut(s) 171, 180
HaeIII GGCC 6 cut(s) 143, 258, 278, 299, 471, 624
HapII CCGG 2 cut(s) 723, 764
HhaI GCGC 3 cut(s) 110, 170, 179
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 8 cut(s) 28, 37, 101, 199, 277, 318, 418, 610
Hin6I GCGC 3 cut(s) 108, 168, 177
HinP1I GCGC 3 cut(s) 108, 168, 177
HinfI GANTC 2 cut(s) 407, 714
HpaII CCGG 2 cut(s) 723, 764
HphI GGTGA 4 cut(s) 145, 151, 466, 721
Hpy166II GTNNAC 1 cut(s) 586
Hpy188I TCNGA 2 cut(s) 330, 756
Hpy188III TCNNGA 5 cut(s) 435, 501, 649, 743, 773
Hpy8I GTNNAC 1 cut(s) 586
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 292
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4V TGCA 4 cut(s) 73, 491, 515, 572
HpyF10VI GCNNNNNNNGC 6 cut(s) 43, 94, 121, 174, 176, 488
HpyF3I CTNAG 4 cut(s) 171, 246, 294, 386
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 8 cut(s) 28, 37, 101, 199, 277, 318, 418, 610
HspAI GCGC 3 cut(s) 108, 168, 177
KasI GGCGCC 1 cut(s) 176
KflI GGGWCCC 1 cut(s) 760
Ksp22I TGATCA 1 cut(s) 745
Kzo9I GATC 2 cut(s) 628, 745
LmnI GCTCC 1 cut(s) 437
Lsp1109I GCAGC 1 cut(s) 409
LweI GCATC 1 cut(s) 201
MaeI CTAG 1 cut(s) 518
MaeIII GTNAC 3 cut(s) 151, 157, 614
MalI GATC 2 cut(s) 630, 747
MboI GATC 2 cut(s) 628, 745
MboII GAAGA 2 cut(s) 391, 652
MhlI GDGCHC 2 cut(s) 442, 700
MluCI AATT 1 cut(s) 643
Mly113I GGCGCC 1 cut(s) 177
MlyI GAGTC 1 cut(s) 416
MroXI GAANNNNTTC 1 cut(s) 644
MseI TTAA 1 cut(s) 702
MslI CAYNNNNRTG 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 165
MspCI CTTAAG 1 cut(s) 701
MspI CCGG 2 cut(s) 723, 764
MspR9I CCNGG 3 cut(s) 112, 723, 764
Mva1269I GAATGC 1 cut(s) 493
MvaI CCWGG 1 cut(s) 112
MvnI CGCG 1 cut(s) 108
MwoI GCNNNNNNNGC 6 cut(s) 43, 94, 121, 174, 176, 488
NarI GGCGCC 1 cut(s) 177
NciI CCSGG 2 cut(s) 723, 764
NcoI CCATGG 3 cut(s) 24, 273, 314
NdeII GATC 2 cut(s) 628, 745
NlaIII CATG 8 cut(s) 28, 37, 101, 199, 277, 318, 418, 610
NlaIV GGNNCC 7 cut(s) 22, 178, 312, 439, 472, 761, 762
NmuCI GTSAC 2 cut(s) 151, 157
NspI RCATGY 1 cut(s) 610
OliI CACNNNNGTG 1 cut(s) 26
PaeR7I CTCGAG 1 cut(s) 92
PctI GAATGC 1 cut(s) 493
PdmI GAANNNNTTC 1 cut(s) 644
PfeI GAWTC 1 cut(s) 714
PflMI CCANNNNNTGG 1 cut(s) 274
PfoI TCCNGGA 1 cut(s) 721
PkrI GCNGC 6 cut(s) 145, 167, 181, 191, 257, 424
PleI GAGTC 1 cut(s) 415
PluTI GGCGCC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 415
PpuMI RGGWCCY 1 cut(s) 760
PshAI GACNNNNGTC 1 cut(s) 350
Psp5II RGGWCCY 1 cut(s) 760
Psp6I CCWGG 1 cut(s) 110
PspFI CCCAGC 3 cut(s) 42, 305, 359
PspGI CCWGG 1 cut(s) 110
PspN4I GGNNCC 7 cut(s) 22, 178, 312, 439, 472, 761, 762
PspPI GGNCC 5 cut(s) 298, 311, 470, 725, 760
PspPPI RGGWCCY 1 cut(s) 760
PspXI VCTCGAGB 1 cut(s) 92
PstI CTGCAG 1 cut(s) 574
RsaI GTAC 2 cut(s) 202, 564
RsaNI GTAC 2 cut(s) 201, 563
RseI CAYNNNNRTG 1 cut(s) 26
Rsr2I CGGWCCG 1 cut(s) 725
RsrII CGGWCCG 1 cut(s) 725
SaqAI TTAA 1 cut(s) 702
SatI GCNGC 6 cut(s) 144, 166, 180, 190, 256, 423
Sau3AI GATC 2 cut(s) 628, 745
Sau96I GGNCC 5 cut(s) 298, 311, 470, 725, 760
SchI GAGTC 1 cut(s) 416
ScrFI CCNGG 3 cut(s) 112, 723, 764
SduI GDGCHC 2 cut(s) 442, 700
SetI ASST 5 cut(s) 93, 295, 328, 621, 711
SfaNI GCATC 1 cut(s) 201
SfcI CTRYAG 2 cut(s) 60, 570
SfoI GGCGCC 1 cut(s) 178
Sfr274I CTCGAG 1 cut(s) 92
SinI GGWCC 3 cut(s) 311, 725, 760
SlaI CTCGAG 1 cut(s) 92
SmiMI CAYNNNNRTG 1 cut(s) 26
SmlI CTYRAG 2 cut(s) 92, 701
SmoI CTYRAG 2 cut(s) 92, 701
SpeI ACTAGT 1 cut(s) 517
Sse9I AATT 1 cut(s) 643
SsiI CCGC 9 cut(s) 106, 144, 165, 180, 189, 242, 255, 528, 781
SspDI GGCGCC 1 cut(s) 176
SspMI CTAG 1 cut(s) 518
StyD4I CCNGG 3 cut(s) 110, 721, 762
StyI CCWWGG 4 cut(s) 24, 273, 314, 619
TaaI ACNGT 1 cut(s) 157
TaqI TCGA 6 cut(s) 16, 93, 138, 405, 410, 627
TaqII GACCGA 1 cut(s) 742
TasI AATT 1 cut(s) 643
TauI GCSGC 5 cut(s) 146, 168, 182, 192, 258
TfiI GAWTC 1 cut(s) 714
Tru1I TTAA 1 cut(s) 702
Tru9I TTAA 1 cut(s) 702
TscAI CASTG 1 cut(s) 214
TseFI GTSAC 2 cut(s) 151, 157
TseI GCWGC 1 cut(s) 422
Tsp45I GTSAC 2 cut(s) 151, 157
TspDTI ATGAA 2 cut(s) 392, 438
TspGWI ACGGA 1 cut(s) 118
TspRI CASTG 1 cut(s) 214
Van91I CCANNNNNTGG 1 cut(s) 274
Vha464I CTTAAG 1 cut(s) 701
VpaK11BI GGWCC 3 cut(s) 311, 725, 760
XagI CCTNNNNNAGG 1 cut(s) 249
XapI RAATTY 1 cut(s) 643
XceI RCATGY 1 cut(s) 610
XhoI CTCGAG 1 cut(s) 92
XmnI GAANNNNTTC 1 cut(s) 644
XspI CTAG 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.