Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0010454

Physical Location & Seq

Genomic Coordinates Forward (+)

21064981 .. 21067770

Gene Structure 2790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g23950.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGAACAAGGTAAACAGGGAGTTATGGTAGCGAAAATGGTGCCTCCTCAGAACCCAATAGAGCAATTGCAGGCTCGCTTCAAGGAGCTGGAGGCTGGCTTCAGGGGCTGGCTGGCCAAGCAGTCTCTGCCCGTCGAGGCCGCCGTCGTCACCCTCACCAGCGGCGCTCAGGGCGCCGCCATCGGTGCCTTCATGGGTACTCTCACCAACGACGTGTCTTCCTCTCTTCCCACTCCTCCTCCTCAGGCCGGCCTCAACCCCCAAGCCATGGCCTCTTTCAAGCAAGCTCAGGCCCTTGCTGGTGGTCCGTTGGTCCAAGCTCGCAACTTTGCTGTTATGACTGGTGTCAATGCCGGCATATCCTGTGTCATGAAAAGAGTGAGAGGCAAGGAGGATGTCCAGTCTAGCATGGTGGCTGCTTTTGGTTCAGGAGCCCTGTTTTCACTTGTGAGCGGCATGGCTGGCCCCAATCAAGCAGCAAATGCAGTTACTTCTGGACTCTTCTTTGCACTTGTTCAAGGTGGACTTTTCAAGTTGGGGCAAAAATTTTCTCAACCACCAACTGAAGATATCTACTACGCTAAAACAAGAAGCATGTTGAACAACCTTGGCCTCCAGAGTTACGAGAAGAATTTCAAGAAAGGCCTATTATCCGACAACACTTTGCCTCTGCTCAACGATAGTGCTCTTAGAGACGTGAAAATCCCTCCCGGACCCAGGCTTCTCATTCTTGATCACATTCAGAGGGACCCGGAGATAAAAGAGAGGCGAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0006403 GO:0006605 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016031 GO:0016043 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0035927 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051031 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0055085 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1 Tim17

Protein Analysis

259

Amino Acids

27.4

Weight (kDa)

9.71

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49560 AT5G24650
fragaria_vesca	FvH4_7g33330 FvH4_7g33330
malus_domestica	MD01G1231500.v1.1 MD07G1303500.v1.1
prunus_persica	Prupe.2G322200_v2.0.a1 Prupe.2G322200_v2.0.a1
pyrus_communis	pycom01g23950 pycom07g27640
rosa_chinensis	RchiOBHm_Chr1g0383311
rosa_laevigata	RLG00000026114
rosa_multiflora	Rmu_sc0007173.1_g000018 Rmu_sc0014196.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277410
rosa_rugosa	Rorug01G0440400
rosa_samantha	Rh1AG466200 Rh1BG423500 Rh1CG436700 Rh1DG456200
rosa_wichuraiana	Rw1G040630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	40, 173, 185
AccB7I	CCANNNNNTGG	1 cut(s)	268
AccBSI	CCGCTC	1 cut(s)	453
AciI	CCGC	4 cut(s)	141, 162, 177, 453
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	2 cut(s)	545, 631
AcuI	CTGAAG	2 cut(s)	85, 585
AcyI	GRCGYC	1 cut(s)	174
AfaI	GTAC	1 cut(s)	199
AfiI	CCNNNNNNNGG	3 cut(s)	248, 268, 717
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	6 cut(s)	82, 280, 518, 532, 601, 637
AjiI	CACGTC	2 cut(s)	214, 697
AjnI	CCWGG	1 cut(s)	716
AluBI	AGCT	3 cut(s)	88, 287, 320
AluI	AGCT	3 cut(s)	88, 287, 320
Alw21I	GWGCWC	1 cut(s)	688
Alw26I	GTCTC	2 cut(s)	129, 687
AlwNI	CAGNNNCTG	2 cut(s)	108, 127
AoxI	GGCC	9 cut(s)	114, 138, 246, 250, 270, 291, 463, 610, 643
ApeKI	GCWGC	2 cut(s)	416, 476
ApoI	RAATTY	2 cut(s)	545, 631
Asp700I	GAANNNNTTC	1 cut(s)	632
AspLEI	GCGC	2 cut(s)	167, 176
AspS9I	GGNCC	6 cut(s)	292, 305, 313, 464, 713, 748
AsuC2I	CCSGG	2 cut(s)	711, 752
AsuHPI	GGTGA	3 cut(s)	142, 148, 196
AvaII	GGWCC	4 cut(s)	305, 313, 713, 748
AxyI	CCTNAGG	1 cut(s)	243
BalI	TGGCCA	1 cut(s)	116
BanI	GGYRCC	3 cut(s)	40, 173, 185
BanII	GRGCYC	1 cut(s)	436
BbsI	GAAGAC	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	688
BbvI	GCAGC	2 cut(s)	403, 488
BccI	CCATC	1 cut(s)	188
BceAI	ACGGC	1 cut(s)	128
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BciT130I	CCWGG	1 cut(s)	718
BclI	TGATCA	1 cut(s)	733
BcnI	CCSGG	2 cut(s)	711, 752
BcoDI	GTCTC	2 cut(s)	129, 687
BfaI	CTAG	1 cut(s)	405
BfoI	RGCGCY	2 cut(s)	168, 177
BisI	GCNGC	6 cut(s)	141, 163, 177, 417, 454, 477
BlsI	GCNGC	6 cut(s)	142, 164, 178, 418, 455, 478
Bme1390I	CCNGG	3 cut(s)	711, 718, 752
Bme18I	GGWCC	4 cut(s)	305, 313, 713, 748
BmgBI	CACGTC	2 cut(s)	214, 697
BmgT120I	GGNCC	6 cut(s)	292, 305, 313, 464, 713, 748
BmiI	GGNNCC	8 cut(s)	42, 175, 187, 433, 466, 715, 749, 750
BmrFI	CCNGG	3 cut(s)	711, 718, 752
BoxI	GACNNNNGTC	1 cut(s)	344
BpiI	GAAGAC	1 cut(s)	210
BpmI	CTGGAG	2 cut(s)	110, 599
Bpu10I	CCTNAGC	2 cut(s)	168, 288
BpuMI	CCSGG	2 cut(s)	711, 752
BsaHI	GRCGYC	1 cut(s)	174
BsaJI	CCNNGG	3 cut(s)	267, 607, 716
BsaXI	ACNNNNNCTCC	4 cut(s)	12, 42, 223, 253
Bsc4I	CCNNNNNNNGG	3 cut(s)	248, 268, 717
Bse118I	RCCGGY	2 cut(s)	248, 353
Bse1I	ACTGG	2 cut(s)	346, 400
Bse21I	CCTNAGG	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	718
BseDI	CCNNGG	3 cut(s)	267, 607, 716
BseGI	GGATG	1 cut(s)	400
BseLI	CCNNNNNNNGG	3 cut(s)	248, 268, 717
BseMII	CTCAG	4 cut(s)	62, 182, 257, 302
BseNI	ACTGG	2 cut(s)	346, 400
BseRI	GAGGAG	4 cut(s)	36, 225, 228, 231
BseXI	GCAGC	2 cut(s)	403, 488
BshFI	GGCC	9 cut(s)	116, 140, 248, 252, 272, 293, 465, 612, 645
BshNI	GGYRCC	3 cut(s)	40, 173, 185
BsiHKAI	GWGCWC	1 cut(s)	688
BsiSI	CCGG	4 cut(s)	249, 354, 711, 752
BslFI	GGGAC	1 cut(s)	761
BslI	CCNNNNNNNGG	3 cut(s)	248, 268, 717
BsmAI	GTCTC	2 cut(s)	129, 687
BsmBI	CGTCTC	1 cut(s)	687
BsmFI	GGGAC	1 cut(s)	761
BsnI	GGCC	9 cut(s)	116, 140, 248, 252, 272, 293, 465, 612, 645
Bsp1286I	GDGCHC	2 cut(s)	436, 688
Bsp143I	GATC	1 cut(s)	733
Bsp19I	CCATGG	1 cut(s)	267
BspACI	CCGC	4 cut(s)	141, 162, 177, 453
BspANI	GGCC	9 cut(s)	116, 140, 248, 252, 272, 293, 465, 612, 645
BspCNI	CTCAG	4 cut(s)	61, 181, 256, 301
BspHI	TCATGA	1 cut(s)	369
BspLI	GGNNCC	8 cut(s)	42, 175, 187, 433, 466, 715, 749, 750
BspT107I	GGYRCC	3 cut(s)	40, 173, 185
BsrBI	CCGCTC	1 cut(s)	453
BsrFI	RCCGGY	2 cut(s)	248, 353
BsrI	ACTGG	2 cut(s)	346, 400
BssAI	RCCGGY	2 cut(s)	248, 353
BssECI	CCNNGG	3 cut(s)	267, 607, 716
BssMI	GATC	1 cut(s)	733
BssNI	GRCGYC	1 cut(s)	174
BssT1I	CCWWGG	2 cut(s)	267, 607
Bst2UI	CCWGG	1 cut(s)	718
Bst6I	CTCTTC	2 cut(s)	231, 506
BstACI	GRCGYC	1 cut(s)	174
BstAPI	GCANNNNNTGC	2 cut(s)	127, 482
BstDEI	CTNAG	5 cut(s)	48, 168, 243, 288, 689
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	1 cut(s)	400
BstH2I	RGCGCY	2 cut(s)	168, 177
BstHHI	GCGC	2 cut(s)	167, 176
BstKTI	GATC	1 cut(s)	736
BstMAI	GTCTC	2 cut(s)	129, 687
BstMBI	GATC	1 cut(s)	733
BstMWI	GCNNNNNNNGC	8 cut(s)	105, 118, 127, 171, 173, 185, 462, 482
BstNI	CCWGG	1 cut(s)	718
BstNSI	RCATGY	1 cut(s)	598
BstPAI	GACNNNNGTC	1 cut(s)	344
BstSCI	CCNGG	3 cut(s)	709, 716, 750
BstV1I	GCAGC	2 cut(s)	403, 488
BstV2I	GAAGAC	1 cut(s)	210
Bsu36I	CCTNAGG	1 cut(s)	243
BsuRI	GGCC	9 cut(s)	116, 140, 248, 252, 272, 293, 465, 612, 645
BtgI	CCRYGG	1 cut(s)	267
BtrI	CACGTC	2 cut(s)	214, 697
BtsCI	GGATG	1 cut(s)	400
CaiI	CAGNNNCTG	2 cut(s)	108, 127
CciI	TCATGA	1 cut(s)	369
CfoI	GCGC	2 cut(s)	167, 176
Cfr10I	RCCGGY	2 cut(s)	248, 353
Cfr13I	GGNCC	6 cut(s)	292, 305, 313, 464, 713, 748
Csp6I	GTAC	1 cut(s)	198
CviAII	CATG	6 cut(s)	193, 268, 370, 409, 457, 595
CviQI	GTAC	1 cut(s)	198
DdeI	CTNAG	5 cut(s)	48, 168, 243, 288, 689
DinI	GGCGCC	1 cut(s)	175
DpnI	GATC	1 cut(s)	735
DpnII	GATC	1 cut(s)	733
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	2 cut(s)	231, 506
EarI	CTCTTC	2 cut(s)	231, 506
Eco130I	CCWWGG	2 cut(s)	267, 607
Eco147I	AGGCCT	1 cut(s)	645
Eco24I	GRGCYC	1 cut(s)	436
Eco32I	GATATC	1 cut(s)	571
Eco47I	GGWCC	4 cut(s)	305, 313, 713, 748
Eco57I	CTGAAG	2 cut(s)	85, 585
Eco81I	CCTNAGG	1 cut(s)	243
EcoO109I	RGGNCCY	2 cut(s)	292, 748
EcoRII	CCWGG	1 cut(s)	716
EcoRV	GATATC	1 cut(s)	571
EcoT14I	CCWWGG	2 cut(s)	267, 607
EcoT38I	GRGCYC	1 cut(s)	436
EgeI	GGCGCC	1 cut(s)	175
EheI	GGCGCC	1 cut(s)	175
ErhI	CCWWGG	2 cut(s)	267, 607
Esp3I	CGTCTC	1 cut(s)	687
FaeI	CATG	6 cut(s)	196, 271, 373, 412, 460, 598
FaiI	YATR	9 cut(s)	26, 194, 269, 338, 359, 371, 410, 458, 596
FalI	AAGNNNNNCTT	2 cut(s)	510, 542
FaqI	GGGAC	1 cut(s)	761
FatI	CATG	6 cut(s)	192, 267, 369, 408, 456, 594
FbaI	TGATCA	1 cut(s)	733
Fnu4HI	GCNGC	6 cut(s)	141, 163, 177, 417, 454, 477
FokI	GGATG	1 cut(s)	407
FriOI	GRGCYC	1 cut(s)	436
FseI	GGCCGGCC	1 cut(s)	252
Fsp4HI	GCNGC	6 cut(s)	141, 163, 177, 417, 454, 477
FspBI	CTAG	1 cut(s)	405
GlaI	GCGC	2 cut(s)	166, 175
GluI	GCNGC	6 cut(s)	141, 163, 177, 417, 454, 477
GsuI	CTGGAG	2 cut(s)	110, 599
HaeII	RGCGCY	2 cut(s)	168, 177
HaeIII	GGCC	9 cut(s)	116, 140, 248, 252, 272, 293, 465, 612, 645
HapII	CCGG	4 cut(s)	249, 354, 711, 752
HhaI	GCGC	2 cut(s)	167, 176
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	6 cut(s)	196, 271, 373, 412, 460, 598
Hin6I	GCGC	2 cut(s)	165, 174
HinP1I	GCGC	2 cut(s)	165, 174
HinfI	GANTC	1 cut(s)	498
HpaII	CCGG	4 cut(s)	249, 354, 711, 752
HphI	GGTGA	3 cut(s)	142, 148, 196
Hpy166II	GTNNAC	2 cut(s)	14, 524
Hpy188I	TCNGA	3 cut(s)	51, 655, 744
Hpy188III	TCNNGA	6 cut(s)	370, 429, 495, 616, 637, 731
Hpy8I	GTNNAC	2 cut(s)	14, 524
Hpy99I	CGWCG	3 cut(s)	137, 149, 215
HpyAV	CCTTC	1 cut(s)	199
HpyCH4IV	ACGT	2 cut(s)	213, 696
HpyCH4V	TGCA	3 cut(s)	70, 485, 509
HpyF10VI	GCNNNNNNNGC	8 cut(s)	105, 118, 127, 171, 173, 185, 462, 482
HpyF3I	CTNAG	5 cut(s)	48, 168, 243, 288, 689
HpySE526I	ACGT	2 cut(s)	213, 696
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	6 cut(s)	196, 271, 373, 412, 460, 598
HspAI	GCGC	2 cut(s)	165, 174
KasI	GGCGCC	1 cut(s)	173
KflI	GGGWCCC	1 cut(s)	748
KroI	GCCGGC	2 cut(s)	248, 353
KroNI	GCCGGC	2 cut(s)	250, 355
Ksp22I	TGATCA	1 cut(s)	733
Kzo9I	GATC	1 cut(s)	733
LmnI	GCTCC	2 cut(s)	85, 431
Lsp1109I	GCAGC	2 cut(s)	403, 488
MaeI	CTAG	1 cut(s)	405
MaeII	ACGT	2 cut(s)	213, 696
MaeIII	GTNAC	3 cut(s)	148, 487, 620
MalI	GATC	1 cut(s)	735
MbiI	CCGCTC	1 cut(s)	453
MboI	GATC	1 cut(s)	733
MboII	GAAGA	5 cut(s)	210, 218, 493, 578, 640
MfeI	CAATTG	1 cut(s)	65
MhlI	GDGCHC	2 cut(s)	436, 688
MlsI	TGGCCA	1 cut(s)	116
MluCI	AATT	3 cut(s)	65, 545, 631
MluNI	TGGCCA	1 cut(s)	116
Mly113I	GGCGCC	1 cut(s)	174
MlyI	GAGTC	1 cut(s)	492
MmeI	TCCRAC	1 cut(s)	678
Mox20I	TGGCCA	1 cut(s)	116
MroNI	GCCGGC	2 cut(s)	248, 353
MroXI	GAANNNNTTC	1 cut(s)	632
MscI	TGGCCA	1 cut(s)	116
Msp20I	TGGCCA	1 cut(s)	116
MspA1I	CMGCKG	1 cut(s)	162
MspI	CCGG	4 cut(s)	249, 354, 711, 752
MspR9I	CCNGG	3 cut(s)	711, 718, 752
MunI	CAATTG	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	718
MwoI	GCNNNNNNNGC	8 cut(s)	105, 118, 127, 171, 173, 185, 462, 482
NaeI	GCCGGC	2 cut(s)	250, 355
NarI	GGCGCC	1 cut(s)	174
NciI	CCSGG	2 cut(s)	711, 752
NcoI	CCATGG	1 cut(s)	267
NdeII	GATC	1 cut(s)	733
NgoMIV	GCCGGC	2 cut(s)	248, 353
NlaIII	CATG	6 cut(s)	196, 271, 373, 412, 460, 598
NlaIV	GGNNCC	8 cut(s)	42, 175, 187, 433, 466, 715, 749, 750
NmuCI	GTSAC	1 cut(s)	148
NspI	RCATGY	1 cut(s)	598
PagI	TCATGA	1 cut(s)	369
PceI	AGGCCT	1 cut(s)	645
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PdiI	GCCGGC	2 cut(s)	250, 355
PdmI	GAANNNNTTC	1 cut(s)	632
PflMI	CCANNNNNTGG	1 cut(s)	268
PfoI	TCCNGGA	1 cut(s)	709
PkrI	GCNGC	6 cut(s)	142, 164, 178, 418, 455, 478
PleI	GAGTC	1 cut(s)	492
PluTI	GGCGCC	1 cut(s)	177
PpsI	GAGTC	1 cut(s)	492
PpuMI	RGGWCCY	1 cut(s)	748
PshAI	GACNNNNGTC	1 cut(s)	344
Psp5II	RGGWCCY	1 cut(s)	748
Psp6I	CCWGG	1 cut(s)	716
PspGI	CCWGG	1 cut(s)	716
PspN4I	GGNNCC	8 cut(s)	42, 175, 187, 433, 466, 715, 749, 750
PspPI	GGNCC	6 cut(s)	292, 305, 313, 464, 713, 748
PspPPI	RGGWCCY	1 cut(s)	748
PstNI	CAGNNNCTG	2 cut(s)	108, 127
RigI	GGCCGGCC	1 cut(s)	252
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
SatI	GCNGC	6 cut(s)	141, 163, 177, 417, 454, 477
Sau3AI	GATC	1 cut(s)	733
Sau96I	GGNCC	6 cut(s)	292, 305, 313, 464, 713, 748
SchI	GAGTC	1 cut(s)	492
ScrFI	CCNGG	3 cut(s)	711, 718, 752
SduI	GDGCHC	2 cut(s)	436, 688
SetI	ASST	8 cut(s)	13, 90, 216, 289, 322, 523, 609, 699
SfoI	GGCGCC	1 cut(s)	175
SinI	GGWCC	4 cut(s)	305, 313, 713, 748
Sse9I	AATT	3 cut(s)	65, 545, 631
SseBI	AGGCCT	1 cut(s)	645
SsiI	CCGC	4 cut(s)	141, 162, 177, 453
SspDI	GGCGCC	1 cut(s)	173
SspMI	CTAG	1 cut(s)	405
StuI	AGGCCT	1 cut(s)	645
StyD4I	CCNGG	3 cut(s)	709, 716, 750
StyI	CCWWGG	2 cut(s)	267, 607
TaiI	ACGT	2 cut(s)	216, 699
TaqI	TCGA	1 cut(s)	135
TasI	AATT	3 cut(s)	65, 545, 631
TauI	GCSGC	4 cut(s)	143, 165, 179, 456
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	2 cut(s)	416, 476
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	2 cut(s)	181, 386
TspGWI	ACGGA	1 cut(s)	297
Van91I	CCANNNNNTGG	1 cut(s)	268
VpaK11BI	GGWCC	4 cut(s)	305, 313, 713, 748
XapI	RAATTY	2 cut(s)	545, 631
XceI	RCATGY	1 cut(s)	598
XmnI	GAANNNNTTC	1 cut(s)	632
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.