Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0010454

Physical Location & Seq

Genomic Coordinates Forward (+)

29908044 .. 29911664

Gene Structure 3621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G322200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGCAACAAGGGAAACAGGGAGTTATGGTGATACCTCAGCAGAACCAAAACCCAATAGAGCAGTTGCAGGCTCGGTTCAAGGAGCTAGAGAGTGGGTTCAAGGGTTGGTTGGCCAAGCAGTCTTTGCCTGTGGAGGCAGCCGTCGTCACACTCACAAGCGGCGCACAGGGCGCTGCCATCGGTGCCTTCATGGGTACTCTCACCAACGACGTTTCTTCCTCTCTTCCCACCCCTCCTCCTCAGGCCGGCCTCAACCCTCAAGCCATGGCCTCTTTCAAGCAAGCTCAGGCCCTTGCTGGGGGTCCCTTGATACAAGCTCGCAACTTTGCTGTTATGACTGGTGTCAATGCCGGCATATCCTGTGTCATGAAAAGATTGAGAGGCAAGGAGGATGTTCAATCTAGCATGGTGGCTGCTTTTGGTTCGGGAGCCCTGTTTTCACTGGTGAGTGGCATGGGCGGCCCCAATCAAGCAGCAAATGCAGCCACTTCTGGACTTTTCTTCGCACTAGTTCAAGGTGGACTTTTCAAGTTGGGGCAAAAATTTTCTCAACCACCAACTGAAGATATTTACTACTCTAAAACAAGGAGCATGTTGAGTAACCTTGGCCTCCAGAATTATGAGAAGAATTTCAAGAAAGGGTTATTATCAGACAACACTTTGCCTCTGCTCAACGACAGTGCACTGAGAGACGTGAAAATCCCTCCTGGACCAAGGCTTCTCATTCTTGATCACATTCAGAGGGACCCTGAGATAAAAGAGAGGCGAGGATTTAGTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0006403 GO:0006605 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016031 GO:0016043 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0035927 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051031 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0055085 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1 Tim17

Protein Analysis

261

Amino Acids

27.66

Weight (kDa)

9.71

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49560 AT5G24650
fragaria_vesca	FvH4_7g33330 FvH4_7g33330
malus_domestica	MD01G1231500.v1.1 MD07G1303500.v1.1
prunus_persica	Prupe.2G322200_v2.0.a1 Prupe.2G322200_v2.0.a1
pyrus_communis	pycom01g23950 pycom07g27640
rosa_chinensis	RchiOBHm_Chr1g0383311
rosa_laevigata	RLG00000026114
rosa_multiflora	Rmu_sc0007173.1_g000018 Rmu_sc0014196.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277410
rosa_rugosa	Rorug01G0440400
rosa_samantha	Rh1AG466200 Rh1BG423500 Rh1CG436700 Rh1DG456200
rosa_wichuraiana	Rw1G040630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	182
AciI	CCGC	2 cut(s)	159, 459
AcoI	YGGCCR	1 cut(s)	111
AcsI	RAATTY	2 cut(s)	542, 628
AcuI	CTGAAG	1 cut(s)	582
AfaI	GTAC	1 cut(s)	196
AfiI	CCNNNNNNNGG	3 cut(s)	245, 297, 298
AgsI	TTSAA	7 cut(s)	79, 100, 277, 398, 515, 529, 634
AhlI	ACTAGT	1 cut(s)	508
AjiI	CACGTC	1 cut(s)	694
AjnI	CCWGG	1 cut(s)	706
AluBI	AGCT	3 cut(s)	85, 284, 317
AluI	AGCT	3 cut(s)	85, 284, 317
Alw21I	GWGCWC	1 cut(s)	685
Alw26I	GTCTC	1 cut(s)	684
Alw44I	GTGCAC	1 cut(s)	681
AoxI	GGCC	7 cut(s)	111, 243, 247, 267, 288, 460, 607
ApaLI	GTGCAC	1 cut(s)	681
ApeKI	GCWGC	5 cut(s)	137, 173, 413, 473, 482
ApoI	RAATTY	2 cut(s)	542, 628
Asp700I	GAANNNNTTC	1 cut(s)	629
AspLEI	GCGC	2 cut(s)	164, 173
AspS9I	GGNCC	5 cut(s)	289, 302, 461, 710, 745
AsuHPI	GGTGA	3 cut(s)	40, 193, 457
AvaII	GGWCC	3 cut(s)	302, 710, 745
AxyI	CCTNAGG	1 cut(s)	240
BaeGI	GKGCMC	1 cut(s)	685
BalI	TGGCCA	1 cut(s)	113
BanI	GGYRCC	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	433
Bbv12I	GWGCWC	1 cut(s)	685
BbvCI	CCTCAGC	1 cut(s)	36
BbvI	GCAGC	5 cut(s)	149, 160, 400, 485, 494
BccI	CCATC	1 cut(s)	185
BceAI	ACGGC	1 cut(s)	125
BciT130I	CCWGG	1 cut(s)	708
BclI	TGATCA	1 cut(s)	730
BcoDI	GTCTC	1 cut(s)	684
BcuI	ACTAGT	1 cut(s)	508
BfaI	CTAG	3 cut(s)	86, 402, 509
BfoI	RGCGCY	1 cut(s)	174
BisI	GCNGC	7 cut(s)	138, 160, 174, 414, 460, 474, 483
BlsI	GCNGC	7 cut(s)	139, 161, 175, 415, 461, 475, 484
Bme1390I	CCNGG	1 cut(s)	708
Bme18I	GGWCC	3 cut(s)	302, 710, 745
BmgBI	CACGTC	1 cut(s)	694
BmgT120I	GGNCC	5 cut(s)	289, 302, 461, 710, 745
BmiI	GGNNCC	7 cut(s)	184, 303, 304, 430, 463, 746, 747
BmrFI	CCNGG	1 cut(s)	708
BoxI	GACNNNNGTC	1 cut(s)	341
BpmI	CTGGAG	1 cut(s)	596
Bpu10I	CCTNAGC	2 cut(s)	36, 285
BpuEI	CTTGAG	1 cut(s)	243
BsaJI	CCNNGG	3 cut(s)	264, 604, 713
BsaXI	ACNNNNNCTCC	4 cut(s)	12, 42, 220, 250
Bsc4I	CCNNNNNNNGG	3 cut(s)	245, 297, 298
Bse118I	RCCGGY	2 cut(s)	245, 350
Bse1I	ACTGG	2 cut(s)	343, 447
Bse21I	CCTNAGG	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	708
BseDI	CCNNGG	3 cut(s)	264, 604, 713
BseGI	GGATG	1 cut(s)	397
BseLI	CCNNNNNNNGG	3 cut(s)	245, 297, 298
BseMII	CTCAG	5 cut(s)	50, 254, 299, 677, 741
BseNI	ACTGG	2 cut(s)	343, 447
BseRI	GAGGAG	2 cut(s)	225, 228
BseSI	GKGCMC	1 cut(s)	685
BseXI	GCAGC	5 cut(s)	149, 160, 400, 485, 494
BseYI	CCCAGC	1 cut(s)	296
BshFI	GGCC	7 cut(s)	113, 245, 249, 269, 290, 462, 609
BshNI	GGYRCC	1 cut(s)	182
BsiHKAI	GWGCWC	1 cut(s)	685
BsiSI	CCGG	2 cut(s)	246, 351
BslFI	GGGAC	2 cut(s)	288, 758
BslI	CCNNNNNNNGG	3 cut(s)	245, 297, 298
BsmAI	GTCTC	1 cut(s)	684
BsmBI	CGTCTC	1 cut(s)	684
BsmFI	GGGAC	2 cut(s)	288, 758
BsnI	GGCC	7 cut(s)	113, 245, 249, 269, 290, 462, 609
Bsp1286I	GDGCHC	2 cut(s)	433, 685
Bsp143I	GATC	1 cut(s)	730
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	2 cut(s)	159, 459
BspANI	GGCC	7 cut(s)	113, 245, 249, 269, 290, 462, 609
BspCNI	CTCAG	5 cut(s)	49, 253, 298, 678, 742
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	7 cut(s)	184, 303, 304, 430, 463, 746, 747
BspT107I	GGYRCC	1 cut(s)	182
BsrFI	RCCGGY	2 cut(s)	245, 350
BsrI	ACTGG	2 cut(s)	343, 447
BssAI	RCCGGY	2 cut(s)	245, 350
BssECI	CCNNGG	3 cut(s)	264, 604, 713
BssMI	GATC	1 cut(s)	730
BssT1I	CCWWGG	3 cut(s)	264, 604, 713
Bst2UI	CCWGG	1 cut(s)	708
Bst4CI	ACNGT	1 cut(s)	680
Bst6I	CTCTTC	1 cut(s)	228
BstAPI	GCANNNNNTGC	2 cut(s)	124, 479
BstC8I	GCNNGC	5 cut(s)	69, 247, 282, 319, 352
BstDEI	CTNAG	5 cut(s)	36, 240, 285, 686, 750
BstDSI	CCRYGG	1 cut(s)	264
BstF5I	GGATG	1 cut(s)	397
BstH2I	RGCGCY	1 cut(s)	174
BstHHI	GCGC	2 cut(s)	164, 173
BstKTI	GATC	1 cut(s)	733
BstMAI	GTCTC	1 cut(s)	684
BstMBI	GATC	1 cut(s)	730
BstMWI	GCNNNNNNNGC	7 cut(s)	124, 168, 170, 182, 459, 479, 482
BstNI	CCWGG	1 cut(s)	708
BstNSI	RCATGY	1 cut(s)	595
BstPAI	GACNNNNGTC	1 cut(s)	341
BstSCI	CCNGG	1 cut(s)	706
BstSLI	GKGCMC	1 cut(s)	685
BstV1I	GCAGC	5 cut(s)	149, 160, 400, 485, 494
Bsu36I	CCTNAGG	1 cut(s)	240
BsuRI	GGCC	7 cut(s)	113, 245, 249, 269, 290, 462, 609
BtgI	CCRYGG	1 cut(s)	264
BtrI	CACGTC	1 cut(s)	694
BtsCI	GGATG	1 cut(s)	397
BtsIMutI	CAGTG	3 cut(s)	440, 683, 685
Cac8I	GCNNGC	5 cut(s)	69, 247, 282, 319, 352
CciI	TCATGA	1 cut(s)	366
CfoI	GCGC	2 cut(s)	164, 173
Cfr10I	RCCGGY	2 cut(s)	245, 350
Cfr13I	GGNCC	5 cut(s)	289, 302, 461, 710, 745
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	6 cut(s)	190, 265, 367, 406, 454, 592
CviQI	GTAC	1 cut(s)	195
DdeI	CTNAG	5 cut(s)	36, 240, 285, 686, 750
DpnI	GATC	1 cut(s)	732
DpnII	GATC	1 cut(s)	730
EaeI	YGGCCR	1 cut(s)	111
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco130I	CCWWGG	3 cut(s)	264, 604, 713
Eco24I	GRGCYC	1 cut(s)	433
Eco47I	GGWCC	3 cut(s)	302, 710, 745
Eco57I	CTGAAG	1 cut(s)	582
Eco81I	CCTNAGG	1 cut(s)	240
EcoO109I	RGGNCCY	3 cut(s)	289, 302, 745
EcoRII	CCWGG	1 cut(s)	706
EcoT14I	CCWWGG	3 cut(s)	264, 604, 713
EcoT38I	GRGCYC	1 cut(s)	433
ErhI	CCWWGG	3 cut(s)	264, 604, 713
Esp3I	CGTCTC	1 cut(s)	684
FaeI	CATG	6 cut(s)	193, 268, 370, 409, 457, 595
FalI	AAGNNNNNCTT	2 cut(s)	507, 539
FaqI	GGGAC	2 cut(s)	288, 758
FatI	CATG	6 cut(s)	189, 264, 366, 405, 453, 591
FbaI	TGATCA	1 cut(s)	730
Fnu4HI	GCNGC	7 cut(s)	138, 160, 174, 414, 460, 474, 483
FokI	GGATG	1 cut(s)	404
FriOI	GRGCYC	1 cut(s)	433
FseI	GGCCGGCC	1 cut(s)	249
Fsp4HI	GCNGC	7 cut(s)	138, 160, 174, 414, 460, 474, 483
FspBI	CTAG	3 cut(s)	86, 402, 509
GlaI	GCGC	2 cut(s)	163, 172
GluI	GCNGC	7 cut(s)	138, 160, 174, 414, 460, 474, 483
GsaI	CCCAGC	1 cut(s)	300
GsuI	CTGGAG	1 cut(s)	596
HaeII	RGCGCY	1 cut(s)	174
HaeIII	GGCC	7 cut(s)	113, 245, 249, 269, 290, 462, 609
HapII	CCGG	2 cut(s)	246, 351
HhaI	GCGC	2 cut(s)	164, 173
Hin1II	CATG	6 cut(s)	193, 268, 370, 409, 457, 595
Hin6I	GCGC	2 cut(s)	162, 171
HinP1I	GCGC	2 cut(s)	162, 171
HpaII	CCGG	2 cut(s)	246, 351
HphI	GGTGA	3 cut(s)	40, 193, 457
Hpy166II	GTNNAC	2 cut(s)	521, 683
Hpy188I	TCNGA	2 cut(s)	652, 741
Hpy188III	TCNNGA	6 cut(s)	367, 426, 492, 613, 634, 728
Hpy8I	GTNNAC	2 cut(s)	521, 683
Hpy99I	CGWCG	2 cut(s)	146, 212
HpyAV	CCTTC	1 cut(s)	196
HpyCH4III	ACNGT	1 cut(s)	680
HpyCH4IV	ACGT	2 cut(s)	210, 693
HpyCH4V	TGCA	4 cut(s)	4, 67, 482, 683
HpyF10VI	GCNNNNNNNGC	7 cut(s)	124, 168, 170, 182, 459, 479, 482
HpyF3I	CTNAG	5 cut(s)	36, 240, 285, 686, 750
HpySE526I	ACGT	2 cut(s)	210, 693
Hsp92II	CATG	6 cut(s)	193, 268, 370, 409, 457, 595
HspAI	GCGC	2 cut(s)	162, 171
KflI	GGGWCCC	2 cut(s)	302, 745
KroI	GCCGGC	2 cut(s)	245, 350
KroNI	GCCGGC	2 cut(s)	247, 352
Ksp22I	TGATCA	1 cut(s)	730
Kzo9I	GATC	1 cut(s)	730
LmnI	GCTCC	3 cut(s)	82, 428, 588
Lsp1109I	GCAGC	5 cut(s)	149, 160, 400, 485, 494
MaeI	CTAG	3 cut(s)	86, 402, 509
MaeII	ACGT	2 cut(s)	210, 693
MaeIII	GTNAC	2 cut(s)	145, 599
MalI	GATC	1 cut(s)	732
MboI	GATC	1 cut(s)	730
MboII	GAAGA	5 cut(s)	207, 215, 493, 575, 637
MhlI	GDGCHC	2 cut(s)	433, 685
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	3 cut(s)	542, 616, 628
MluNI	TGGCCA	1 cut(s)	113
Mox20I	TGGCCA	1 cut(s)	113
MroNI	GCCGGC	2 cut(s)	245, 350
MroXI	GAANNNNTTC	1 cut(s)	629
MscI	TGGCCA	1 cut(s)	113
Msp20I	TGGCCA	1 cut(s)	113
MspI	CCGG	2 cut(s)	246, 351
MspR9I	CCNGG	1 cut(s)	708
MvaI	CCWGG	1 cut(s)	708
MwoI	GCNNNNNNNGC	7 cut(s)	124, 168, 170, 182, 459, 479, 482
NaeI	GCCGGC	2 cut(s)	247, 352
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	1 cut(s)	730
NgoMIV	GCCGGC	2 cut(s)	245, 350
NlaIII	CATG	6 cut(s)	193, 268, 370, 409, 457, 595
NlaIV	GGNNCC	7 cut(s)	184, 303, 304, 430, 463, 746, 747
NmuCI	GTSAC	1 cut(s)	145
NspI	RCATGY	1 cut(s)	595
PagI	TCATGA	1 cut(s)	366
PdiI	GCCGGC	2 cut(s)	247, 352
PdmI	GAANNNNTTC	1 cut(s)	629
PfoI	TCCNGGA	1 cut(s)	706
PkrI	GCNGC	7 cut(s)	139, 161, 175, 415, 461, 475, 484
PpuMI	RGGWCCY	2 cut(s)	302, 745
PshAI	GACNNNNGTC	1 cut(s)	341
Psp5II	RGGWCCY	2 cut(s)	302, 745
Psp6I	CCWGG	1 cut(s)	706
PspFI	CCCAGC	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	706
PspN4I	GGNNCC	7 cut(s)	184, 303, 304, 430, 463, 746, 747
PspPI	GGNCC	5 cut(s)	289, 302, 461, 710, 745
PspPPI	RGGWCCY	2 cut(s)	302, 745
RigI	GGCCGGCC	1 cut(s)	249
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
SatI	GCNGC	7 cut(s)	138, 160, 174, 414, 460, 474, 483
Sau3AI	GATC	1 cut(s)	730
Sau96I	GGNCC	5 cut(s)	289, 302, 461, 710, 745
ScrFI	CCNGG	1 cut(s)	708
SduI	GDGCHC	2 cut(s)	433, 685
SetI	ASST	8 cut(s)	37, 87, 213, 286, 319, 520, 606, 696
SinI	GGWCC	3 cut(s)	302, 710, 745
SmlI	CTYRAG	1 cut(s)	258
SmoI	CTYRAG	1 cut(s)	258
SpeI	ACTAGT	1 cut(s)	508
Sse9I	AATT	3 cut(s)	542, 616, 628
SsiI	CCGC	2 cut(s)	159, 459
SspMI	CTAG	3 cut(s)	86, 402, 509
StyD4I	CCNGG	1 cut(s)	706
StyI	CCWWGG	3 cut(s)	264, 604, 713
TaaI	ACNGT	1 cut(s)	680
TaiI	ACGT	2 cut(s)	213, 696
TasI	AATT	3 cut(s)	542, 616, 628
TauI	GCSGC	2 cut(s)	162, 462
TscAI	CASTG	3 cut(s)	447, 685, 690
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	5 cut(s)	137, 173, 413, 473, 482
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	2 cut(s)	178, 383
TspRI	CASTG	3 cut(s)	447, 685, 690
VneI	GTGCAC	1 cut(s)	681
VpaK11BI	GGWCC	3 cut(s)	302, 710, 745
XapI	RAATTY	2 cut(s)	542, 628
XceI	RCATGY	1 cut(s)	595
XmnI	GAANNNNTTC	1 cut(s)	629
XspI	CTAG	3 cut(s)	86, 402, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.