Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0010454

Physical Location & Seq

Genomic Coordinates Forward (+)

54265533 .. 54268793

Gene Structure 3261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG423500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGACGGGTGTCAATGCTGGGATATCTTGTGTTATGAAGAGACTGAGAGGAAAGGAGGATGTCGAGTCGAGCATGGTGGCTGCTTTTGGTTCAGGAGCCCTGTTTTCATTGGTGAGTGGTTTTGGTGGCCCCAATCAAGCACAGAATGCACTTACTTCGGGAGTTTTCTTTGCACTAGTTCAAGGCGGACTTTTCAAGTTGGGACAAAAGTTTTCCAAAGTACCATCTGCAGATAAAGATGTTTACTATTCTAAAACAAGAAGCATGTTGAGTAACCTTGGCCTCGATCAGTATGAGAAGAATTTCAAGAAAGGGTTGCTAACAGACTACACCTTGCCTCTGCTGAATGATAGTGCTCTTAAGGAGGTGAGAATCCCTCCCGGACCAAGGCTTCTCATTCTTGATCACATTCAGAGGGACCCGGAGTTTCAACAGAAGCGGAAACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0006403 GO:0006605 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016031 GO:0016043 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0035927 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051031 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0055085 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1 Tim17

Protein Analysis

149

Amino Acids

16.34

Weight (kDa)

9.64

Isoelectric Point (pI)

26.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	2 - 60	1.3e-08	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49560 AT5G24650
fragaria_vesca	FvH4_7g33330 FvH4_7g33330
malus_domestica	MD01G1231500.v1.1 MD07G1303500.v1.1
prunus_persica	Prupe.2G322200_v2.0.a1 Prupe.2G322200_v2.0.a1
pyrus_communis	pycom01g23950 pycom07g27640
rosa_chinensis	RchiOBHm_Chr1g0383311
rosa_laevigata	RLG00000026114
rosa_multiflora	Rmu_sc0007173.1_g000018 Rmu_sc0014196.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277410
rosa_rugosa	Rorug01G0440400
rosa_samantha	Rh1AG466200 Rh1BG423500 Rh1CG436700 Rh1DG456200
rosa_wichuraiana	Rw1G040630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	186, 439
AcsI	RAATTY	1 cut(s)	301
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	1 cut(s)	387
AflII	CTTAAG	1 cut(s)	359
AgsI	TTSAA	4 cut(s)	182, 196, 307, 431
AhlI	ACTAGT	1 cut(s)	175
Alw21I	GWGCWC	1 cut(s)	358
Alw26I	GTCTC	1 cut(s)	34
AoxI	GGCC	2 cut(s)	127, 280
ApeKI	GCWGC	1 cut(s)	80
ApoI	RAATTY	1 cut(s)	301
Asp700I	GAANNNNTTC	1 cut(s)	302
AspS9I	GGNCC	3 cut(s)	128, 383, 418
AsuC2I	CCSGG	2 cut(s)	381, 422
AsuHPI	GGTGA	2 cut(s)	124, 379
AvaII	GGWCC	2 cut(s)	383, 418
BanII	GRGCYC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	358
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	1 cut(s)	232
BcgI	CGANNNNNNTGC	2 cut(s)	138, 172
BclI	TGATCA	1 cut(s)	403
BcnI	CCSGG	2 cut(s)	381, 422
BcoDI	GTCTC	1 cut(s)	34
BcuI	ACTAGT	1 cut(s)	175
BfaI	CTAG	1 cut(s)	176
BfmI	CTRYAG	1 cut(s)	228
BfrI	CTTAAG	1 cut(s)	359
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme1390I	CCNGG	2 cut(s)	381, 422
Bme18I	GGWCC	2 cut(s)	383, 418
BmgT120I	GGNCC	3 cut(s)	128, 383, 418
BmiI	GGNNCC	4 cut(s)	97, 130, 419, 420
BmrFI	CCNGG	2 cut(s)	381, 422
BoxI	GACNNNNGTC	1 cut(s)	8
BplI	GAGNNNNNCTC	2 cut(s)	361, 393
BpuMI	CCSGG	2 cut(s)	381, 422
BsaJI	CCNNGG	2 cut(s)	277, 386
Bsc4I	CCNNNNNNNGG	1 cut(s)	387
BseDI	CCNNGG	2 cut(s)	277, 386
BseGI	GGATG	1 cut(s)	64
BseLI	CCNNNNNNNGG	1 cut(s)	387
BseMII	CTCAG	1 cut(s)	35
BseXI	GCAGC	1 cut(s)	67
BseYI	CCCAGC	1 cut(s)	17
BshFI	GGCC	2 cut(s)	129, 282
BsiHKAI	GWGCWC	1 cut(s)	358
BsiSI	CCGG	2 cut(s)	381, 422
BslFI	GGGAC	2 cut(s)	216, 431
BslI	CCNNNNNNNGG	1 cut(s)	387
BsmAI	GTCTC	1 cut(s)	34
BsmFI	GGGAC	2 cut(s)	216, 431
BsmI	GAATGC	1 cut(s)	151
BsnI	GGCC	2 cut(s)	129, 282
Bsp1286I	GDGCHC	2 cut(s)	100, 358
Bsp143I	GATC	2 cut(s)	286, 403
BspACI	CCGC	2 cut(s)	186, 439
BspANI	GGCC	2 cut(s)	129, 282
BspCNI	CTCAG	1 cut(s)	36
BspLI	GGNNCC	4 cut(s)	97, 130, 419, 420
BspMAI	CTGCAG	1 cut(s)	232
BspTI	CTTAAG	1 cut(s)	359
BssECI	CCNNGG	2 cut(s)	277, 386
BssMI	GATC	2 cut(s)	286, 403
BssT1I	CCWWGG	2 cut(s)	277, 386
Bst6I	CTCTTC	1 cut(s)	32
BstAFI	CTTAAG	1 cut(s)	359
BstAPI	GCANNNNNTGC	1 cut(s)	146
BstDEI	CTNAG	1 cut(s)	44
BstF5I	GGATG	1 cut(s)	64
BstKTI	GATC	2 cut(s)	289, 406
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	2 cut(s)	286, 403
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNSI	RCATGY	1 cut(s)	268
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	379, 420
BstSFI	CTRYAG	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	67
BsuRI	GGCC	2 cut(s)	129, 282
BtsCI	GGATG	1 cut(s)	64
Cfr13I	GGNCC	3 cut(s)	128, 383, 418
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	2 cut(s)	73, 265
CviJI	RGCY	5 cut(s)	80, 98, 129, 282, 391
CviKI_1	RGCY	5 cut(s)	80, 98, 129, 282, 391
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	1 cut(s)	44
DpnI	GATC	2 cut(s)	288, 405
DpnII	GATC	2 cut(s)	286, 403
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
EciI	GGCGGA	1 cut(s)	201
Eco130I	CCWWGG	2 cut(s)	277, 386
Eco24I	GRGCYC	1 cut(s)	100
Eco32I	GATATC	1 cut(s)	24
Eco47I	GGWCC	2 cut(s)	383, 418
EcoO109I	RGGNCCY	1 cut(s)	418
EcoRV	GATATC	1 cut(s)	24
EcoT14I	CCWWGG	2 cut(s)	277, 386
EcoT38I	GRGCYC	1 cut(s)	100
ErhI	CCWWGG	2 cut(s)	277, 386
FaeI	CATG	2 cut(s)	76, 268
FaiI	YATR	4 cut(s)	35, 74, 266, 294
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FaqI	GGGAC	2 cut(s)	216, 431
FatI	CATG	2 cut(s)	72, 264
FbaI	TGATCA	1 cut(s)	403
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	1 cut(s)	71
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	1 cut(s)	176
GluI	GCNGC	1 cut(s)	81
GsaI	CCCAGC	1 cut(s)	21
HaeIII	GGCC	2 cut(s)	129, 282
HapII	CCGG	2 cut(s)	381, 422
Hin1II	CATG	2 cut(s)	76, 268
HinfI	GANTC	2 cut(s)	65, 372
HpaII	CCGG	2 cut(s)	381, 422
HphI	GGTGA	2 cut(s)	124, 379
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	1 cut(s)	414
Hpy188III	TCNNGA	4 cut(s)	93, 159, 307, 401
Hpy8I	GTNNAC	1 cut(s)	244
HpyCH4V	TGCA	3 cut(s)	149, 173, 230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	1 cut(s)	44
Hsp92II	CATG	2 cut(s)	76, 268
KflI	GGGWCCC	1 cut(s)	418
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	2 cut(s)	286, 403
LmnI	GCTCC	1 cut(s)	95
LpnPI	CCDG	5 cut(s)	3, 78, 113, 394, 435
Lsp1109I	GCAGC	1 cut(s)	67
MaeI	CTAG	1 cut(s)	176
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	2 cut(s)	288, 405
MboI	GATC	2 cut(s)	286, 403
MboII	GAAGA	2 cut(s)	49, 310
MhlI	GDGCHC	2 cut(s)	100, 358
MluCI	AATT	1 cut(s)	301
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	7 cut(s)	41, 49, 293, 348, 358, 387, 408
MroXI	GAANNNNTTC	1 cut(s)	302
MseI	TTAA	1 cut(s)	360
MspCI	CTTAAG	1 cut(s)	359
MspI	CCGG	2 cut(s)	381, 422
MspR9I	CCNGG	2 cut(s)	381, 422
Mva1269I	GAATGC	1 cut(s)	151
MwoI	GCNNNNNNNGC	1 cut(s)	146
NciI	CCSGG	2 cut(s)	381, 422
NdeII	GATC	2 cut(s)	286, 403
NlaIII	CATG	2 cut(s)	76, 268
NlaIV	GGNNCC	4 cut(s)	97, 130, 419, 420
NspI	RCATGY	1 cut(s)	268
PctI	GAATGC	1 cut(s)	151
PdmI	GAANNNNTTC	1 cut(s)	302
PfeI	GAWTC	1 cut(s)	372
PfoI	TCCNGGA	1 cut(s)	379
PkrI	GCNGC	1 cut(s)	82
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PpuMI	RGGWCCY	1 cut(s)	418
PshAI	GACNNNNGTC	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	418
PspFI	CCCAGC	1 cut(s)	17
PspN4I	GGNNCC	4 cut(s)	97, 130, 419, 420
PspPI	GGNCC	3 cut(s)	128, 383, 418
PspPPI	RGGWCCY	1 cut(s)	418
PstI	CTGCAG	1 cut(s)	232
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	2 cut(s)	286, 403
Sau96I	GGNCC	3 cut(s)	128, 383, 418
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	2 cut(s)	381, 422
SduI	GDGCHC	2 cut(s)	100, 358
SetI	ASST	3 cut(s)	279, 335, 369
SfcI	CTRYAG	1 cut(s)	228
SinI	GGWCC	2 cut(s)	383, 418
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
SpeI	ACTAGT	1 cut(s)	175
Sse9I	AATT	1 cut(s)	301
SsiI	CCGC	2 cut(s)	186, 439
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	2 cut(s)	379, 420
StyI	CCWWGG	2 cut(s)	277, 386
TaqI	TCGA	3 cut(s)	63, 68, 285
TasI	AATT	1 cut(s)	301
TfiI	GAWTC	1 cut(s)	372
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TseI	GCWGC	1 cut(s)	80
TspDTI	ATGAA	2 cut(s)	50, 96
Vha464I	CTTAAG	1 cut(s)	359
VpaK11BI	GGWCC	2 cut(s)	383, 418
XapI	RAATTY	1 cut(s)	301
XceI	RCATGY	1 cut(s)	268
XmnI	GAANNNNTTC	1 cut(s)	302
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.