Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0010454

Physical Location & Seq

Genomic Coordinates Forward (+)

66173505 .. 66176765

Gene Structure 3261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG456200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGAACAAGGAAATCGAGGCACCATGGTCTCCATGCTTCCCCAGCAGAACCAAAACCCTATAGAGCAGTTGCAGGCTCGCTTCAAGCACCTCGACCATTCCTTCCGCGCCTGGCTCTCCAAGCAGTCCGTCCCCGTCGAGGCCGCCATCGTCACCGTCACCAGCGGCGCTCAGGGCGCCGCTATCGGCGGCATCATGGGTACTCTCACCGGCGACATCTCCTCCACTCTCCCCACTCCTCCGCCTCAGGCCGGCGGCCTCAACCCCCAGACCATGGCCTCCTTCAAGCAAGCTCAGGCTCTTGCTGGGGGTCCATTGATACAAGCTCGGAACTTTGCTGTGATGACGGGTGTCAATGCTGGGATATCTTGTGTTATGAAGAGACTGAGAGGAAAGGAGGATGTCGAGTCGAGCATGGTGGCTGCTTTTGGTTCAGGAGCCCTGTTTTCATTGGTGAGTGGTTTTGGTGGCCCCAATCAAGCACAGAATGCACTTACTTCGGGAGTTTTCTTTGCACTAGTTCAAGGCGGACTTTTCAAGTTGGGACAAAAGTTTTCCAAAGTACCATCTGCAGATAAAGATGTTTACTATTCTAAAACAAGAAGCATGTTGAGTAACCTTGGCCTCGATCAGTATGAGAAGAATTTCAAGAAAGGGTTGCTAACAGACTACACCTTGCCTCTGCTGAATGATAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0006403 GO:0006605 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016031 GO:0016043 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0035927 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051031 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0055085 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1 Tim17

Protein Analysis

232

Amino Acids

24.62

Weight (kDa)

9.64

Isoelectric Point (pI)

28.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	52 - 174	2.6e-14	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49560 AT5G24650
fragaria_vesca	FvH4_7g33330 FvH4_7g33330
malus_domestica	MD01G1231500.v1.1 MD07G1303500.v1.1
prunus_persica	Prupe.2G322200_v2.0.a1 Prupe.2G322200_v2.0.a1
pyrus_communis	pycom01g23950 pycom07g27640
rosa_chinensis	RchiOBHm_Chr1g0383311
rosa_laevigata	RLG00000026114
rosa_multiflora	Rmu_sc0007173.1_g000018 Rmu_sc0014196.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277410
rosa_rugosa	Rorug01G0440400
rosa_samantha	Rh1AG466200 Rh1BG423500 Rh1CG436700 Rh1DG456200
rosa_wichuraiana	Rw1G040630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	20, 176
AccB7I	CCANNNNNTGG	1 cut(s)	274
AccII	CGCG	1 cut(s)	108
AciI	CCGC	8 cut(s)	106, 144, 165, 180, 189, 242, 255, 528
AcsI	RAATTY	1 cut(s)	643
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	2 cut(s)	202, 564
AfiI	CCNNNNNNNGG	3 cut(s)	139, 251, 274
AgsI	TTSAA	5 cut(s)	85, 286, 524, 538, 649
AhlI	ACTAGT	1 cut(s)	517
AjnI	CCWGG	1 cut(s)	110
AluBI	AGCT	2 cut(s)	293, 326
AluI	AGCT	2 cut(s)	293, 326
Alw26I	GTCTC	2 cut(s)	34, 376
AoxI	GGCC	6 cut(s)	141, 249, 256, 276, 469, 622
ApeKI	GCWGC	1 cut(s)	422
ApoI	RAATTY	1 cut(s)	643
Asp700I	GAANNNNTTC	1 cut(s)	644
AspLEI	GCGC	3 cut(s)	110, 170, 179
AspS9I	GGNCC	2 cut(s)	311, 470
AsuHPI	GGTGA	4 cut(s)	145, 151, 199, 466
AvaII	GGWCC	1 cut(s)	311
AxyI	CCTNAGG	1 cut(s)	246
BanI	GGYRCC	2 cut(s)	20, 176
BanII	GRGCYC	1 cut(s)	442
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	2 cut(s)	155, 574
BcgI	CGANNNNNNTGC	2 cut(s)	480, 514
BciT130I	CCWGG	1 cut(s)	112
BcoDI	GTCTC	2 cut(s)	34, 376
BcuI	ACTAGT	1 cut(s)	517
BfaI	CTAG	1 cut(s)	518
BfmI	CTRYAG	2 cut(s)	60, 570
BfoI	RGCGCY	2 cut(s)	171, 180
BisI	GCNGC	6 cut(s)	144, 166, 180, 190, 256, 423
BlsI	GCNGC	6 cut(s)	145, 167, 181, 191, 257, 424
Bme1390I	CCNGG	1 cut(s)	112
Bme18I	GGWCC	1 cut(s)	311
BmgT120I	GGNCC	2 cut(s)	311, 470
BmiI	GGNNCC	5 cut(s)	22, 178, 312, 439, 472
BmrFI	CCNGG	1 cut(s)	112
BmsI	GCATC	1 cut(s)	201
BoxI	GACNNNNGTC	1 cut(s)	350
Bpu10I	CCTNAGC	2 cut(s)	171, 294
BsaHI	GRCGYC	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	34
BsaJI	CCNNGG	3 cut(s)	24, 273, 619
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 251, 274
Bse118I	RCCGGY	2 cut(s)	209, 251
Bse21I	CCTNAGG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	112
BseDI	CCNNGG	3 cut(s)	24, 273, 619
BseGI	GGATG	1 cut(s)	406
BseLI	CCNNNNNNNGG	3 cut(s)	139, 251, 274
BseMII	CTCAG	4 cut(s)	185, 260, 308, 377
BseRI	GAGGAG	2 cut(s)	211, 228
BseXI	GCAGC	1 cut(s)	409
BseYI	CCCAGC	3 cut(s)	42, 305, 359
Bsh1236I	CGCG	1 cut(s)	108
BshFI	GGCC	6 cut(s)	143, 251, 258, 278, 471, 624
BshNI	GGYRCC	2 cut(s)	20, 176
BsiSI	CCGG	2 cut(s)	210, 252
BslFI	GGGAC	2 cut(s)	116, 558
BslI	CCNNNNNNNGG	3 cut(s)	139, 251, 274
BsmAI	GTCTC	2 cut(s)	34, 376
BsmFI	GGGAC	2 cut(s)	116, 558
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	6 cut(s)	143, 251, 258, 278, 471, 624
Bso31I	GGTCTC	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	442
Bsp143I	GATC	1 cut(s)	628
Bsp19I	CCATGG	2 cut(s)	24, 273
BspACI	CCGC	8 cut(s)	106, 144, 165, 180, 189, 242, 255, 528
BspANI	GGCC	6 cut(s)	143, 251, 258, 278, 471, 624
BspCNI	CTCAG	4 cut(s)	184, 259, 307, 378
BspFNI	CGCG	1 cut(s)	108
BspLI	GGNNCC	5 cut(s)	22, 178, 312, 439, 472
BspMAI	CTGCAG	1 cut(s)	574
BspT107I	GGYRCC	2 cut(s)	20, 176
BspTNI	GGTCTC	1 cut(s)	34
BsrFI	RCCGGY	2 cut(s)	209, 251
BssAI	RCCGGY	2 cut(s)	209, 251
BssECI	CCNNGG	3 cut(s)	24, 273, 619
BssMI	GATC	1 cut(s)	628
BssNI	GRCGYC	1 cut(s)	177
BssT1I	CCWWGG	3 cut(s)	24, 273, 619
Bst2UI	CCWGG	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	157
Bst6I	CTCTTC	1 cut(s)	374
BstACI	GRCGYC	1 cut(s)	177
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstC8I	GCNNGC	4 cut(s)	75, 79, 253, 291
BstDEI	CTNAG	4 cut(s)	171, 246, 294, 386
BstDSI	CCRYGG	2 cut(s)	24, 273
BstF5I	GGATG	1 cut(s)	406
BstFNI	CGCG	1 cut(s)	108
BstH2I	RGCGCY	2 cut(s)	171, 180
BstHHI	GCGC	3 cut(s)	110, 170, 179
BstKTI	GATC	1 cut(s)	631
BstMAI	GTCTC	2 cut(s)	34, 376
BstMBI	GATC	1 cut(s)	628
BstMWI	GCNNNNNNNGC	5 cut(s)	43, 121, 174, 176, 488
BstNI	CCWGG	1 cut(s)	112
BstNSI	RCATGY	1 cut(s)	610
BstPAI	GACNNNNGTC	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	110
BstSFI	CTRYAG	2 cut(s)	60, 570
BstUI	CGCG	1 cut(s)	108
BstV1I	GCAGC	1 cut(s)	409
Bsu36I	CCTNAGG	1 cut(s)	246
BsuRI	GGCC	6 cut(s)	143, 251, 258, 278, 471, 624
BtgI	CCRYGG	2 cut(s)	24, 273
BtsCI	GGATG	1 cut(s)	406
Cac8I	GCNNGC	4 cut(s)	75, 79, 253, 291
CfoI	GCGC	3 cut(s)	110, 170, 179
Cfr10I	RCCGGY	2 cut(s)	209, 251
Cfr13I	GGNCC	2 cut(s)	311, 470
Csp6I	GTAC	2 cut(s)	201, 563
CviAII	CATG	6 cut(s)	25, 34, 196, 274, 415, 607
CviQI	GTAC	2 cut(s)	201, 563
DdeI	CTNAG	4 cut(s)	171, 246, 294, 386
DinI	GGCGCC	1 cut(s)	178
DpnI	GATC	1 cut(s)	630
DpnII	GATC	1 cut(s)	628
Eam1104I	CTCTTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	374
EciI	GGCGGA	2 cut(s)	231, 543
Eco130I	CCWWGG	3 cut(s)	24, 273, 619
Eco24I	GRGCYC	1 cut(s)	442
Eco31I	GGTCTC	1 cut(s)	34
Eco32I	GATATC	1 cut(s)	366
Eco47I	GGWCC	1 cut(s)	311
Eco81I	CCTNAGG	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	110
EcoRV	GATATC	1 cut(s)	366
EcoT14I	CCWWGG	3 cut(s)	24, 273, 619
EcoT38I	GRGCYC	1 cut(s)	442
EgeI	GGCGCC	1 cut(s)	178
EheI	GGCGCC	1 cut(s)	178
ErhI	CCWWGG	3 cut(s)	24, 273, 619
FaeI	CATG	6 cut(s)	28, 37, 199, 277, 418, 610
FaiI	YATR	9 cut(s)	26, 35, 62, 197, 275, 377, 416, 608, 636
FalI	AAGNNNNNCTT	2 cut(s)	516, 548
FaqI	GGGAC	2 cut(s)	116, 558
FatI	CATG	6 cut(s)	24, 33, 195, 273, 414, 606
Fnu4HI	GCNGC	6 cut(s)	144, 166, 180, 190, 256, 423
FokI	GGATG	1 cut(s)	413
FriOI	GRGCYC	1 cut(s)	442
Fsp4HI	GCNGC	6 cut(s)	144, 166, 180, 190, 256, 423
FspBI	CTAG	1 cut(s)	518
GlaI	GCGC	3 cut(s)	109, 169, 178
GluI	GCNGC	6 cut(s)	144, 166, 180, 190, 256, 423
GsaI	CCCAGC	3 cut(s)	46, 309, 363
HaeII	RGCGCY	2 cut(s)	171, 180
HaeIII	GGCC	6 cut(s)	143, 251, 258, 278, 471, 624
HapII	CCGG	2 cut(s)	210, 252
HhaI	GCGC	3 cut(s)	110, 170, 179
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	6 cut(s)	28, 37, 199, 277, 418, 610
Hin6I	GCGC	3 cut(s)	108, 168, 177
HinP1I	GCGC	3 cut(s)	108, 168, 177
HinfI	GANTC	1 cut(s)	407
HpaII	CCGG	2 cut(s)	210, 252
HphI	GGTGA	4 cut(s)	145, 151, 199, 466
Hpy166II	GTNNAC	1 cut(s)	586
Hpy188I	TCNGA	1 cut(s)	330
Hpy188III	TCNNGA	3 cut(s)	435, 501, 649
Hpy8I	GTNNAC	1 cut(s)	586
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	2 cut(s)	112, 292
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4V	TGCA	4 cut(s)	73, 491, 515, 572
HpyF10VI	GCNNNNNNNGC	5 cut(s)	43, 121, 174, 176, 488
HpyF3I	CTNAG	4 cut(s)	171, 246, 294, 386
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	6 cut(s)	28, 37, 199, 277, 418, 610
HspAI	GCGC	3 cut(s)	108, 168, 177
KasI	GGCGCC	1 cut(s)	176
KroI	GCCGGC	1 cut(s)	251
KroNI	GCCGGC	1 cut(s)	253
Kzo9I	GATC	1 cut(s)	628
LmnI	GCTCC	1 cut(s)	437
Lsp1109I	GCAGC	1 cut(s)	409
LweI	GCATC	1 cut(s)	201
MaeI	CTAG	1 cut(s)	518
MaeIII	GTNAC	3 cut(s)	151, 157, 614
MalI	GATC	1 cut(s)	630
MboI	GATC	1 cut(s)	628
MboII	GAAGA	2 cut(s)	391, 652
MhlI	GDGCHC	1 cut(s)	442
MluCI	AATT	1 cut(s)	643
Mly113I	GGCGCC	1 cut(s)	177
MlyI	GAGTC	1 cut(s)	416
MroNI	GCCGGC	1 cut(s)	251
MroXI	GAANNNNTTC	1 cut(s)	644
MspA1I	CMGCKG	1 cut(s)	165
MspI	CCGG	2 cut(s)	210, 252
MspR9I	CCNGG	1 cut(s)	112
Mva1269I	GAATGC	1 cut(s)	493
MvaI	CCWGG	1 cut(s)	112
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	5 cut(s)	43, 121, 174, 176, 488
NaeI	GCCGGC	1 cut(s)	253
NarI	GGCGCC	1 cut(s)	177
NcoI	CCATGG	2 cut(s)	24, 273
NdeII	GATC	1 cut(s)	628
NgoMIV	GCCGGC	1 cut(s)	251
NlaIII	CATG	6 cut(s)	28, 37, 199, 277, 418, 610
NlaIV	GGNNCC	5 cut(s)	22, 178, 312, 439, 472
NmuCI	GTSAC	2 cut(s)	151, 157
NspI	RCATGY	1 cut(s)	610
PctI	GAATGC	1 cut(s)	493
PdiI	GCCGGC	1 cut(s)	253
PdmI	GAANNNNTTC	1 cut(s)	644
PflMI	CCANNNNNTGG	1 cut(s)	274
PkrI	GCNGC	6 cut(s)	145, 167, 181, 191, 257, 424
PleI	GAGTC	1 cut(s)	415
PluTI	GGCGCC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	415
PshAI	GACNNNNGTC	1 cut(s)	350
Psp6I	CCWGG	1 cut(s)	110
PspFI	CCCAGC	3 cut(s)	42, 305, 359
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	5 cut(s)	22, 178, 312, 439, 472
PspPI	GGNCC	2 cut(s)	311, 470
PstI	CTGCAG	1 cut(s)	574
RsaI	GTAC	2 cut(s)	202, 564
RsaNI	GTAC	2 cut(s)	201, 563
SatI	GCNGC	6 cut(s)	144, 166, 180, 190, 256, 423
Sau3AI	GATC	1 cut(s)	628
Sau96I	GGNCC	2 cut(s)	311, 470
SchI	GAGTC	1 cut(s)	416
ScrFI	CCNGG	1 cut(s)	112
SduI	GDGCHC	1 cut(s)	442
SetI	ASST	6 cut(s)	93, 295, 328, 621, 677, 698
SfaNI	GCATC	1 cut(s)	201
SfcI	CTRYAG	2 cut(s)	60, 570
SfoI	GGCGCC	1 cut(s)	178
SgrAI	CRCCGGYG	1 cut(s)	209
SinI	GGWCC	1 cut(s)	311
SpeI	ACTAGT	1 cut(s)	517
Sse9I	AATT	1 cut(s)	643
SsiI	CCGC	8 cut(s)	106, 144, 165, 180, 189, 242, 255, 528
SspDI	GGCGCC	1 cut(s)	176
SspMI	CTAG	1 cut(s)	518
StyD4I	CCNGG	1 cut(s)	110
StyI	CCWWGG	3 cut(s)	24, 273, 619
TaaI	ACNGT	1 cut(s)	157
TaqI	TCGA	6 cut(s)	16, 93, 138, 405, 410, 627
TasI	AATT	1 cut(s)	643
TauI	GCSGC	5 cut(s)	146, 168, 182, 192, 258
TseFI	GTSAC	2 cut(s)	151, 157
TseI	GCWGC	1 cut(s)	422
Tsp45I	GTSAC	2 cut(s)	151, 157
TspDTI	ATGAA	2 cut(s)	392, 438
TspGWI	ACGGA	1 cut(s)	118
Van91I	CCANNNNNTGG	1 cut(s)	274
VpaK11BI	GGWCC	1 cut(s)	311
XapI	RAATTY	1 cut(s)	643
XceI	RCATGY	1 cut(s)	610
XmnI	GAANNNNTTC	1 cut(s)	644
XspI	CTAG	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.