AT3G49990

Protein LTV1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008366
Physical Location & Seq
Reverse (-)
18532301 .. 18534415
2115 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G49990.1

Sequence Viewer

Length: 1509 bp
ATGGGGAAGAAGAAGTTTATTGATAAGAAAAAGGCGGCGACTTTCGAGTTGTGTCCTCGTGATACGTCAGACCCAAGATACAGTGATGCACCAGGTGGTGATAAGATCTTCTTACGAGTTGATCAAAACCCTGTTAACATCAATGGTTTCATTGAAGAAGATGAAGAAGAAGAAGGAGACAGCTCACGGTTTGATGATGCTCCTGAAGAGATGGATTATGGTTACTCTAGTTTTGGGGATTCGAGTAGTTCTTTACCTGCTCATGTGAGGAAGGAGATTTTAGAGTTAGGGTATCCTGATGATGGTTATAATTACTTGGAGCATTTGAGAGAGATTAAGAATACTGGTGGTGGTTCTAATTTCTATGTGAATCCTAAGTATGAGGTTGCTCAGTTACCTCGTGATGTTAAGGCTTATGATGCGTCTCGTGTGAAGATCTCTGGTATGGTGAATGAAGAAGGTAATGATAATAAGTTGATGTATAGTGTTGCGTCCAAGACTGTTAACGTCAAGGTGCAGAAAGCTATTGATCCTGAAGTTGCTGCGTTGCTTGAAAACAGTGATGGGTCTGAGTTTGGTTCTGATGTTGAGGATTTGGAAGAAGATTTTGTTGTTCAAGCTAATCTTACTCAAAAGGGTGAATCTTCTGGTGTGAGCAATGGAGAGCTCGAGTTTTCTGTAAGACGTGAGGTTAGAGAAAGAGAAAGTGATGAACCTGTGGCTGAAAACCCGAGAGTTCCTCGTCAAATTGATGAGCTATTTGATCAGCTCGAACTCAATGAATATGGAAGTGATAGTGACGGTGATGGTTACATAGCTGAAGATGGAGAAGAAGAAGAAGAAGAAGACTTCATGGCTCAAGAAGTTCAGAATCTTATTCATGGGAAGGCAAAAGATTATGAGCTTGAAGAAAAATATATGAACCCTGCGGATATACTGAAGAACAGTGACTCTGTCAGAGATAAAGAGGAAGTGGACACTGCTGCTCATGTTATCCGCCGAACTGTAGAATATGGTGAAAATTTTGATAACGGGAATGAAGATGAATTTGTAGAGCTGACTGAAGAAAGCAGCGATGAAAGCGAGAAGCATGATTGTGAAACCATAGTCTCAACATACTCGAATCTCGATAACCTCCCTGGTAAAATCCTTGCTGCAGAGTCAGCTAGGCAGAAGAAGCTGAGTGAAACATTAGCTAACGCATTGAGTTCAAATGGAAGAATCATTAATCTCCAAGGGAGAGAGAGGATTCCTGTCGAGTTTTTACCTGGTAGGAGAGCTGAACAAACCGATGTCAAAGCGGAAATCCCAAAAGCTGAACCGATCAAGAGGAAGACTCATGGTCAAGAGTCGAAAGAAGAGAAGAAAGAGCGGAAAAATGCTGTAAAAGCCGAAAAGCGAGAAGCAAGGATAATTAAGAAACAGACAAAGATGCTGTATTGCGGTGAAACGCAGCGTGCTCAAAGAGCTGTTGCTACCTCTGGTCCATCGTCGAGACCTCTAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTV

Protein Analysis

502

Amino Acids

56.47

Weight (kDa)

4.65

Isoelectric Point (pI)

46.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTV PF04180 8 - 291 7.4e-08 Low temperature viability protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 309
Acc36I ACCTGC 1 cut(s) 265
AccBSI CCGCTC 1 cut(s) 1372
AciI CCGC 6 cut(s) 35, 929, 997, 1301, 1372, 1443
AclWI GGATC 1 cut(s) 524
AcsI RAATTY 2 cut(s) 1021, 1046
AcuI CTGAAG 5 cut(s) 225, 555, 840, 959, 1083
AdeI CACNNNGTG 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 302
AgsI TTSAA 5 cut(s) 155, 554, 617, 908, 1212
AhdI GACNNNNNGTC 1 cut(s) 1341
AjiI CACGTC 1 cut(s) 686
AjnI CCWGG 3 cut(s) 91, 1138, 1267
Alw21I GWGCWC 2 cut(s) 669, 1462
Alw26I GTCTC 4 cut(s) 171, 429, 1114, 1489
AlwI GGATC 1 cut(s) 524
Ama87I CYCGRG 2 cut(s) 668, 730
ApeKI GCWGC 5 cut(s) 542, 983, 1071, 1154, 1453
ApoI RAATTY 2 cut(s) 1021, 1046
AseI ATTAAT 1 cut(s) 1227
AspS9I GGNCC 1 cut(s) 1484
AsuHPI GGTGA 6 cut(s) 110, 460, 650, 815, 1028, 1457
AvaI CYCGRG 2 cut(s) 668, 730
AvaII GGWCC 1 cut(s) 1484
BanII GRGCYC 1 cut(s) 669
BauI CACGAG 3 cut(s) 57, 399, 426
BbsI GAAGAC 2 cut(s) 852, 1340
Bbv12I GWGCWC 2 cut(s) 669, 1462
BbvI GCAGC 5 cut(s) 529, 970, 1083, 1141, 1465
BccI CCATC 6 cut(s) 205, 296, 557, 800, 818, 1495
BciT130I CCWGG 3 cut(s) 93, 1140, 1269
BciVI GTATCC 1 cut(s) 303
BclI TGATCA 2 cut(s) 121, 763
BcoDI GTCTC 4 cut(s) 171, 429, 1114, 1489
BfaI CTAG 2 cut(s) 228, 1167
BfmI CTRYAG 2 cut(s) 1005, 1155
BfuAI ACCTGC 1 cut(s) 265
BfuI GTATCC 1 cut(s) 303
BglII AGATCT 2 cut(s) 105, 435
BisI GCNGC 6 cut(s) 36, 543, 984, 1072, 1155, 1454
BlsI GCNGC 6 cut(s) 37, 544, 985, 1073, 1156, 1455
Bme1390I CCNGG 3 cut(s) 93, 1140, 1269
Bme18I GGWCC 1 cut(s) 1484
BmeRI GACNNNNNGTC 1 cut(s) 1341
BmeT110I CYCGRG 2 cut(s) 668, 730
BmgBI CACGTC 1 cut(s) 686
BmgT120I GGNCC 1 cut(s) 1484
BmrFI CCNGG 3 cut(s) 93, 1140, 1269
BmsI GCATC 4 cut(s) 76, 187, 409, 1422
BpiI GAAGAC 2 cut(s) 852, 1340
BplI GAGNNNNNCTC 4 cut(s) 724, 756, 1321, 1353
BpuEI CTTGAG 1 cut(s) 843
BsaI GGTCTC 1 cut(s) 1489
BsaJI CCNNGG 2 cut(s) 1138, 1234
Bsc4I CCNNNNNNNGG 1 cut(s) 302
Bse1I ACTGG 1 cut(s) 349
Bse3DI GCAATG 1 cut(s) 664
BseBI CCWGG 3 cut(s) 93, 1140, 1269
BseDI CCNNGG 2 cut(s) 1138, 1234
BseLI CCNNNNNNNGG 1 cut(s) 302
BseMI GCAATG 1 cut(s) 664
BseMII CTCAG 3 cut(s) 404, 561, 1172
BseNI ACTGG 1 cut(s) 349
BseXI GCAGC 5 cut(s) 529, 970, 1083, 1141, 1465
BsgI GTGCAG 1 cut(s) 536
BsiHKAI GWGCWC 2 cut(s) 669, 1462
BsiHKCI CYCGRG 2 cut(s) 668, 730
BslI CCNNNNNNNGG 1 cut(s) 302
BsmAI GTCTC 4 cut(s) 171, 429, 1114, 1489
BsmBI CGTCTC 1 cut(s) 429
Bso31I GGTCTC 1 cut(s) 1489
BsoBI CYCGRG 2 cut(s) 668, 730
Bsp1286I GDGCHC 2 cut(s) 669, 1462
Bsp143I GATC 6 cut(s) 105, 121, 435, 529, 763, 1323
BspACI CCGC 6 cut(s) 35, 929, 997, 1301, 1372, 1443
BspCNI CTCAG 3 cut(s) 403, 562, 1173
BspMAI CTGCAG 1 cut(s) 1159
BspMI ACCTGC 1 cut(s) 265
BspPI GGATC 1 cut(s) 524
BspTNI GGTCTC 1 cut(s) 1489
BsrBI CCGCTC 1 cut(s) 1372
BsrDI GCAATG 1 cut(s) 664
BsrI ACTGG 1 cut(s) 349
BssECI CCNNGG 2 cut(s) 1138, 1234
BssMI GATC 6 cut(s) 105, 121, 435, 529, 763, 1323
BssSI CACGAG 3 cut(s) 57, 399, 426
BssT1I CCWWGG 1 cut(s) 1234
Bst2BI CACGAG 3 cut(s) 57, 399, 426
Bst2UI CCWGG 3 cut(s) 93, 1140, 1269
Bst4CI ACNGT 7 cut(s) 83, 189, 502, 560, 803, 947, 1006
Bst6I CTCTTC 2 cut(s) 201, 1353
BstC8I GCNNGC 1 cut(s) 1458
BstDEI CTNAG 4 cut(s) 375, 390, 570, 1181
BstKTI GATC 6 cut(s) 108, 124, 438, 532, 766, 1326
BstMAI GTCTC 4 cut(s) 171, 429, 1114, 1489
BstMBI GATC 6 cut(s) 105, 121, 435, 529, 763, 1323
BstMWI GCNNNNNNNGC 6 cut(s) 419, 1080, 1163, 1177, 1388, 1466
BstNI CCWGG 3 cut(s) 93, 1140, 1269
BstSCI CCNGG 3 cut(s) 91, 1138, 1267
BstSFI CTRYAG 2 cut(s) 1005, 1155
BstV1I GCAGC 5 cut(s) 529, 970, 1083, 1141, 1465
BstV2I GAAGAC 2 cut(s) 852, 1340
BstX2I RGATCY 2 cut(s) 105, 435
BstYI RGATCY 2 cut(s) 105, 435
BsuI GTATCC 1 cut(s) 303
BtgZI GCGATG 1 cut(s) 1089
BtrI CACGTC 1 cut(s) 686
BtsI GCAGTG 1 cut(s) 978
BtsIMutI CAGTG 4 cut(s) 88, 565, 952, 978
BveI ACCTGC 1 cut(s) 265
Cac8I GCNNGC 1 cut(s) 1458
Cfr13I GGNCC 1 cut(s) 1484
CseI GACGC 2 cut(s) 411, 480
CsiI ACCWGGT 2 cut(s) 91, 1267
CviAII CATG 6 cut(s) 263, 853, 881, 989, 1091, 1340
DdeI CTNAG 4 cut(s) 375, 390, 570, 1181
DpnI GATC 6 cut(s) 107, 123, 437, 531, 765, 1325
DpnII GATC 6 cut(s) 105, 121, 435, 529, 763, 1323
DraIII CACNNNGTG 1 cut(s) 95
DriI GACNNNNNGTC 1 cut(s) 1341
Eam1104I CTCTTC 2 cut(s) 201, 1353
Eam1105I GACNNNNNGTC 1 cut(s) 1341
EarI CTCTTC 2 cut(s) 201, 1353
EciI GGCGGA 1 cut(s) 986
Ecl136II GAGCTC 1 cut(s) 667
Eco130I CCWWGG 1 cut(s) 1234
Eco24I GRGCYC 1 cut(s) 669
Eco31I GGTCTC 1 cut(s) 1489
Eco47I GGWCC 1 cut(s) 1484
Eco53kI GAGCTC 1 cut(s) 667
Eco57I CTGAAG 5 cut(s) 225, 555, 840, 959, 1083
Eco88I CYCGRG 2 cut(s) 668, 730
EcoICRI GAGCTC 1 cut(s) 667
EcoRII CCWGG 3 cut(s) 91, 1138, 1267
EcoT14I CCWWGG 1 cut(s) 1234
EcoT38I GRGCYC 1 cut(s) 669
ErhI CCWWGG 1 cut(s) 1234
Esp3I CGTCTC 1 cut(s) 429
FaeI CATG 6 cut(s) 266, 856, 884, 992, 1094, 1343
FalI AAGNNNNNCTT 4 cut(s) 95, 127, 609, 641
FatI CATG 6 cut(s) 262, 852, 880, 988, 1090, 1339
FbaI TGATCA 2 cut(s) 121, 763
Fnu4HI GCNGC 6 cut(s) 36, 543, 984, 1072, 1155, 1454
FriOI GRGCYC 1 cut(s) 669
Fsp4HI GCNGC 6 cut(s) 36, 543, 984, 1072, 1155, 1454
FspBI CTAG 2 cut(s) 228, 1167
GluI GCNGC 6 cut(s) 36, 543, 984, 1072, 1155, 1454
HgaI GACGC 2 cut(s) 411, 480
Hin1II CATG 6 cut(s) 266, 856, 884, 992, 1094, 1343
HincII GTYRAC 2 cut(s) 136, 505
HindII GTYRAC 2 cut(s) 136, 505
HpaI GTTAAC 2 cut(s) 136, 505
HphI GGTGA 6 cut(s) 110, 460, 650, 815, 1028, 1457
Hpy166II GTNNAC 3 cut(s) 136, 505, 976
Hpy188I TCNGA 5 cut(s) 70, 571, 583, 870, 959
Hpy8I GTNNAC 3 cut(s) 136, 505, 976
Hpy99I CGWCG 1 cut(s) 1495
HpyAV CCTTC 4 cut(s) 167, 265, 452, 880
HpyCH4III ACNGT 7 cut(s) 83, 189, 502, 560, 803, 947, 1006
HpyCH4IV ACGT 3 cut(s) 65, 507, 685
HpyCH4V TGCA 3 cut(s) 89, 517, 1157
HpyF10VI GCNNNNNNNGC 6 cut(s) 419, 1080, 1163, 1177, 1388, 1466
HpyF3I CTNAG 4 cut(s) 375, 390, 570, 1181
HpySE526I ACGT 3 cut(s) 65, 507, 685
Hsp92II CATG 6 cut(s) 266, 856, 884, 992, 1094, 1343
Ksp22I TGATCA 2 cut(s) 121, 763
KspAI GTTAAC 2 cut(s) 136, 505
Kzo9I GATC 6 cut(s) 105, 121, 435, 529, 763, 1323
LmnI GCTCC 2 cut(s) 205, 319
Lsp1109I GCAGC 5 cut(s) 529, 970, 1083, 1141, 1465
LweI GCATC 4 cut(s) 76, 187, 409, 1422
MabI ACCWGGT 2 cut(s) 91, 1267
MaeI CTAG 2 cut(s) 228, 1167
MaeII ACGT 3 cut(s) 65, 507, 685
MaeIII GTNAC 5 cut(s) 221, 393, 797, 809, 947
MalI GATC 6 cut(s) 107, 123, 437, 531, 765, 1325
MbiI CCGCTC 1 cut(s) 1372
MboI GATC 6 cut(s) 105, 121, 435, 529, 763, 1323
MflI RGATCY 2 cut(s) 105, 435
MhlI GDGCHC 2 cut(s) 669, 1462
MluCI AATT 6 cut(s) 310, 358, 747, 1021, 1046, 1413
MlyI GAGTC 4 cut(s) 944, 1169, 1330, 1358
MseI TTAA 6 cut(s) 135, 336, 408, 504, 1227, 1416
MslI CAYNNNNRTG 1 cut(s) 1095
MspR9I CCNGG 3 cut(s) 93, 1140, 1269
MvaI CCWGG 3 cut(s) 93, 1140, 1269
MwoI GCNNNNNNNGC 6 cut(s) 419, 1080, 1163, 1177, 1388, 1466
NdeII GATC 6 cut(s) 105, 121, 435, 529, 763, 1323
NlaIII CATG 6 cut(s) 266, 856, 884, 992, 1094, 1343
NmuCI GTSAC 2 cut(s) 797, 947
PaeR7I CTCGAG 1 cut(s) 668
PfeI GAWTC 7 cut(s) 239, 370, 641, 871, 1123, 1221, 1249
PflFI GACNNNGTC 1 cut(s) 953
PkrI GCNGC 6 cut(s) 37, 544, 985, 1073, 1156, 1455
PleI GAGTC 4 cut(s) 944, 1168, 1330, 1357
PpsI GAGTC 4 cut(s) 944, 1168, 1330, 1357
PshBI ATTAAT 1 cut(s) 1227
PsiI TTATAA 1 cut(s) 309
Psp124BI GAGCTC 1 cut(s) 669
Psp6I CCWGG 3 cut(s) 91, 1138, 1267
PspGI CCWGG 3 cut(s) 91, 1138, 1267
PspPI GGNCC 1 cut(s) 1484
PspXI VCTCGAGB 1 cut(s) 668
PstI CTGCAG 1 cut(s) 1159
PsuI RGATCY 2 cut(s) 105, 435
PsyI GACNNNGTC 1 cut(s) 953
RseI CAYNNNNRTG 1 cut(s) 1095
SacI GAGCTC 1 cut(s) 669
SaqAI TTAA 6 cut(s) 135, 336, 408, 504, 1227, 1416
SatI GCNGC 6 cut(s) 36, 543, 984, 1072, 1155, 1454
Sau3AI GATC 6 cut(s) 105, 121, 435, 529, 763, 1323
Sau96I GGNCC 1 cut(s) 1484
SchI GAGTC 4 cut(s) 944, 1169, 1330, 1358
ScrFI CCNGG 3 cut(s) 93, 1140, 1269
SduI GDGCHC 2 cut(s) 669, 1462
SexAI ACCWGGT 2 cut(s) 91, 1267
SfaNI GCATC 4 cut(s) 76, 187, 409, 1422
SfcI CTRYAG 2 cut(s) 1005, 1155
Sfr274I CTCGAG 1 cut(s) 668
SinI GGWCC 1 cut(s) 1484
SlaI CTCGAG 1 cut(s) 668
SmiMI CAYNNNNRTG 1 cut(s) 1095
SmlI CTYRAG 2 cut(s) 668, 858
SmoI CTYRAG 2 cut(s) 668, 858
Sse9I AATT 6 cut(s) 310, 358, 747, 1021, 1046, 1413
SsiI CCGC 6 cut(s) 35, 929, 997, 1301, 1372, 1443
SspMI CTAG 2 cut(s) 228, 1167
SstI GAGCTC 1 cut(s) 669
StyD4I CCNGG 3 cut(s) 91, 1138, 1267
StyI CCWWGG 1 cut(s) 1234
TaaI ACNGT 7 cut(s) 83, 189, 502, 560, 803, 947, 1006
TaiI ACGT 3 cut(s) 68, 510, 688
TaqI TCGA 9 cut(s) 45, 242, 669, 771, 1121, 1128, 1257, 1352, 1493
TasI AATT 6 cut(s) 310, 358, 747, 1021, 1046, 1413
TauI GCSGC 1 cut(s) 38
TfiI GAWTC 7 cut(s) 239, 370, 641, 871, 1123, 1221, 1249
Tru1I TTAA 6 cut(s) 135, 336, 408, 504, 1227, 1416
Tru9I TTAA 6 cut(s) 135, 336, 408, 504, 1227, 1416
TscAI CASTG 4 cut(s) 88, 565, 952, 985
TseFI GTSAC 2 cut(s) 797, 947
TseI GCWGC 5 cut(s) 542, 983, 1071, 1154, 1453
Tsp45I GTSAC 2 cut(s) 797, 947
TspRI CASTG 4 cut(s) 88, 565, 952, 985
Tth111I GACNNNGTC 1 cut(s) 953
VpaK11BI GGWCC 1 cut(s) 1484
VspI ATTAAT 1 cut(s) 1227
XapI RAATTY 2 cut(s) 1021, 1046
XhoI CTCGAG 1 cut(s) 668
XspI CTAG 2 cut(s) 228, 1167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.