Rh6BG477500

Protein LTV1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0008366
Physical Location & Seq
Reverse (-)
68375246 .. 68377734
2489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG477500.1

Sequence Viewer

Length: 1428 bp
ATGGGGAGAAAGAAGAAGTTCATTGACAAGAAAAAGTCGTCTACTTTCCAATTAGTCGCCCGAGACTCCTCCGACCCCAACTACGACGACTCACCCGGCGGCGACCGTGTCTTCATCCAAGTCTCCGGCCGACCTAACGACGATCCCGATTCTATCTTCGCCGACGCGCCTGAGGACGAAGAAGGTGACCACTATTACGACCAGGCTTTCGGAAACTCTGAGGCGGCGGCTCAGCCCCTGCCGGAGAAACTGAGGAAGGAGATTCTGGACCTCGGGTTTCCCGACGACGGTTACAACTATTTGAACCATTTGAGGGAGATTAAGAACACCGGCGGTGGCTCCGCCTATTACTCCAACCCCAAGGCTAAGCTCGAGCAGCTTCCGCATGACGTCAAGGCATATGATGCTTCAAGATTGCGAATTTCGGAGAATGAGGCTCCGGATGAGAATGCTATTTACAATGTGGCGTCTAAGACGGTCAATGTGAGGGTTAAGAAAGCTGTTGATCCGGAGGTTTCTGCATTGCTTGATGCTGATAGCGATGCTTCGCTGTTCGGTTCTGATGATGAGGATTTGGAAGAGGATTTTGTGGTTAAGGCTAACCTTGCTGATGGAGATGAAGAGGAGGATGTGTGTATAGGTGATGGGCCAAGTTTTGTTGAGCAATCGGAGAACAACAATGCAAGGAATGAAGTTGGTGTGGTTGGAAGAAATTGCGTGGAGAGAGGAAAGGGTGACTTTGTGGTAGATGATCCACGAGCTCGTCGGGATGTGGATGAAGAATTTGATATGGTTTTAAGTCGGGAATATGACAATGACGATGATGATGACTATGAAGGTGGTGATCATGACGATGATTGTTTTTATGGAGATGAAGTGGATGAATCCATTGAGGAGAAGCTCAAGAACGTCAAACTTAATGACTGCGTGAAGGATGACTTTGAGCTTAATGAATATGAGGTTCCGGGAGATGATGAGGAGAAACAGAAAACGAAGCAGCTTGGGAAGATATATGAGGATGAAGATCAAGAGGACAAGGTGGTAATTGTAGAGGAATCTAGTGATGAATCAGAAAAATGGGACTGTGAGACTGTTATTACTACATATTCAAATCTTGAGAACCATCCTGCGAAAATCGGAGCTCCAGAGCTAAGTAGAAAGAAGAAGCAGCTTTCAGAAACCGTTTTTGGAGGCTTGGATGCCTCCAATAATTTGATAAAGCTTGGGGGAAGACAGAGGCTGCCTGTGGACTTCTTGCCTCGTAATAGAAGACCTGCTGCTACAGAGAGGGCGACAGAGAAGGTGGAAGATATAGGTAGCTTGAAAACTGAGCAGCAGAAAAGGAAGCAACATGGTCAGGAGTCAAAGGAGGAGAAGAAAGAGCGGAAGGTATGGGTCTGCTATTTTTTTAGCTCATCTTGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTV

Protein Analysis

475

Amino Acids

53.71

Weight (kDa)

4.46

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTV PF04180 9 - 209 5.4e-10 Low temperature viability protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 393
Acc36I ACCTGC 1 cut(s) 1282
AccBSI CCGCTC 1 cut(s) 1384
AccI GTMKAC 1 cut(s) 41
AccII CGCG 1 cut(s) 167
AccIII TCCGGA 2 cut(s) 439, 508
AciI CCGC 7 cut(s) 99, 224, 227, 333, 342, 383, 1384
AclWI GGATC 3 cut(s) 137, 500, 746
AcoI YGGCCR 1 cut(s) 127
AcsI RAATTY 2 cut(s) 420, 782
AcyI GRCGYC 2 cut(s) 390, 467
AfiI CCNNNNNNNGG 2 cut(s) 287, 313
AgsI TTSAA 4 cut(s) 304, 411, 1110, 1324
AjnI CCWGG 1 cut(s) 201
AjuI GAANNNNNNNTTGG 2 cut(s) 1170, 1202
Alw21I GWGCWC 2 cut(s) 763, 1144
Alw26I GTCTC 3 cut(s) 57, 127, 1082
AlwI GGATC 3 cut(s) 137, 500, 746
AlwNI CAGNNNCTG 2 cut(s) 238, 1240
Ama87I CYCGRG 3 cut(s) 60, 272, 371
Aor13HI TCCGGA 2 cut(s) 439, 508
AoxI GGCC 2 cut(s) 127, 647
ApeKI GCWGC 6 cut(s) 376, 997, 1168, 1240, 1277, 1333
ApoI RAATTY 2 cut(s) 420, 782
ArsI GACNNNNNNTTYG 2 cut(s) 191, 223
Asp700I GAANNNNTTC 1 cut(s) 17
AspLEI GCGC 1 cut(s) 169
AspS9I GGNCC 2 cut(s) 268, 647
AsuC2I CCSGG 2 cut(s) 96, 966
AsuHPI GGTGA 5 cut(s) 84, 197, 653, 746, 854
AvaI CYCGRG 3 cut(s) 60, 272, 371
AvaII GGWCC 1 cut(s) 268
AxyI CCTNAGG 1 cut(s) 171
BanII GRGCYC 2 cut(s) 763, 1144
BauI CACGAG 1 cut(s) 756
BbsI GAAGAC 3 cut(s) 103, 1237, 1276
Bbv12I GWGCWC 2 cut(s) 763, 1144
BbvI GCAGC 6 cut(s) 388, 1009, 1180, 1227, 1264, 1345
BccI CCATC 3 cut(s) 605, 638, 1131
BciT130I CCWGG 1 cut(s) 203
BclI TGATCA 1 cut(s) 844
BcnI CCSGG 2 cut(s) 96, 966
BcoDI GTCTC 3 cut(s) 57, 127, 1082
BfaI CTAG 1 cut(s) 1059
BfmI CTRYAG 1 cut(s) 1281
BfuAI ACCTGC 1 cut(s) 1282
BisI GCNGC 9 cut(s) 100, 225, 228, 377, 998, 1169, 1241, 1278, 1334
BlpI GCTNAGC 2 cut(s) 231, 366
BlsI GCNGC 9 cut(s) 101, 226, 229, 378, 999, 1170, 1242, 1279, 1335
Bme1390I CCNGG 3 cut(s) 96, 203, 966
Bme18I GGWCC 1 cut(s) 268
BmeT110I CYCGRG 3 cut(s) 60, 272, 371
BmgT120I GGNCC 2 cut(s) 268, 647
BmiI GGNNCC 3 cut(s) 340, 438, 963
BmrFI CCNGG 3 cut(s) 96, 203, 966
BmsI GCATC 4 cut(s) 394, 520, 532, 1189
BpiI GAAGAC 3 cut(s) 103, 1237, 1276
BpmI CTGGAG 1 cut(s) 1128
Bpu1102I GCTNAGC 2 cut(s) 231, 366
BpuEI CTTGAG 2 cut(s) 887, 1136
BpuMI CCSGG 2 cut(s) 96, 966
BsaBI GATNNNNATC 1 cut(s) 1023
BsaHI GRCGYC 2 cut(s) 390, 467
BsaJI CCNNGG 2 cut(s) 271, 360
BsaWI WCCGGW 2 cut(s) 439, 508
BsaXI ACNNNNNCTCC 4 cut(s) 617, 647, 861, 891
Bsc4I CCNNNNNNNGG 2 cut(s) 287, 313
Bse118I RCCGGY 1 cut(s) 329
Bse21I CCTNAGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 521
Bse8I GATNNNNATC 1 cut(s) 1023
BseAI TCCGGA 2 cut(s) 439, 508
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 2 cut(s) 271, 360
BseJI GATNNNNATC 1 cut(s) 1023
BseLI CCNNNNNNNGG 2 cut(s) 287, 313
BseMI GCAATG 1 cut(s) 521
BseMII CTCAG 5 cut(s) 162, 210, 242, 245, 1320
BseRI GAGGAG 5 cut(s) 58, 638, 908, 992, 1385
BseX3I CGGCCG 1 cut(s) 127
BseXI GCAGC 6 cut(s) 388, 1009, 1180, 1227, 1264, 1345
Bsh1236I CGCG 1 cut(s) 167
Bsh1285I CGRYCG 2 cut(s) 106, 130
BshFI GGCC 2 cut(s) 129, 649
BsiEI CGRYCG 2 cut(s) 106, 130
BsiHKAI GWGCWC 2 cut(s) 763, 1144
BsiHKCI CYCGRG 3 cut(s) 60, 272, 371
BsiSI CCGG 7 cut(s) 96, 126, 242, 330, 440, 509, 965
BslFI GGGAC 1 cut(s) 1094
BslI CCNNNNNNNGG 2 cut(s) 287, 313
BsmAI GTCTC 3 cut(s) 57, 127, 1082
BsmFI GGGAC 1 cut(s) 1094
BsmI GAATGC 1 cut(s) 454
BsnI GGCC 2 cut(s) 129, 649
BsoBI CYCGRG 3 cut(s) 60, 272, 371
Bsp1286I GDGCHC 2 cut(s) 763, 1144
Bsp13I TCCGGA 2 cut(s) 439, 508
Bsp143I GATC 5 cut(s) 142, 505, 751, 844, 1024
Bsp1720I GCTNAGC 2 cut(s) 231, 366
BspACI CCGC 7 cut(s) 99, 224, 227, 333, 342, 383, 1384
BspANI GGCC 2 cut(s) 129, 649
BspCNI CTCAG 5 cut(s) 163, 211, 243, 244, 1321
BspEI TCCGGA 2 cut(s) 439, 508
BspFNI CGCG 1 cut(s) 167
BspHI TCATGA 1 cut(s) 847
BspLI GGNNCC 3 cut(s) 340, 438, 963
BspMI ACCTGC 1 cut(s) 1282
BspPI GGATC 3 cut(s) 137, 500, 746
BsrBI CCGCTC 1 cut(s) 1384
BsrDI GCAATG 1 cut(s) 521
BsrFI RCCGGY 1 cut(s) 329
BssAI RCCGGY 1 cut(s) 329
BssECI CCNNGG 2 cut(s) 271, 360
BssMI GATC 5 cut(s) 142, 505, 751, 844, 1024
BssNI GRCGYC 2 cut(s) 390, 467
BssSI CACGAG 1 cut(s) 756
BssT1I CCWWGG 1 cut(s) 360
Bst2BI CACGAG 1 cut(s) 756
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 6 cut(s) 107, 290, 478, 1085, 1093, 1183
Bst6I CTCTTC 2 cut(s) 573, 615
BstACI GRCGYC 2 cut(s) 390, 467
BstAPI GCANNNNNTGC 1 cut(s) 404
BstDEI CTNAG 8 cut(s) 171, 219, 231, 251, 366, 471, 1151, 1329
BstEII GGTNACC 1 cut(s) 185
BstFNI CGCG 1 cut(s) 167
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 5 cut(s) 145, 508, 754, 847, 1027
BstMAI GTCTC 3 cut(s) 57, 127, 1082
BstMBI GATC 5 cut(s) 142, 505, 751, 844, 1024
BstMCI CGRYCG 2 cut(s) 106, 130
BstMWI GCNNNNNNNGC 4 cut(s) 376, 382, 404, 605
BstNI CCWGG 1 cut(s) 203
BstPI GGTNACC 1 cut(s) 185
BstSCI CCNGG 3 cut(s) 94, 201, 964
BstSFI CTRYAG 1 cut(s) 1281
BstUI CGCG 1 cut(s) 167
BstV1I GCAGC 6 cut(s) 388, 1009, 1180, 1227, 1264, 1345
BstV2I GAAGAC 3 cut(s) 103, 1237, 1276
BstZI CGGCCG 1 cut(s) 127
Bsu36I CCTNAGG 1 cut(s) 171
BsuRI GGCC 2 cut(s) 129, 649
BtgZI GCGATG 1 cut(s) 555
BveI ACCTGC 1 cut(s) 1282
CaiI CAGNNNCTG 2 cut(s) 238, 1240
CciI TCATGA 1 cut(s) 847
CfoI GCGC 1 cut(s) 169
Cfr10I RCCGGY 1 cut(s) 329
Cfr13I GGNCC 2 cut(s) 268, 647
CseI GACGC 2 cut(s) 173, 456
CviAII CATG 3 cut(s) 386, 848, 1352
DdeI CTNAG 8 cut(s) 171, 219, 231, 251, 366, 471, 1151, 1329
DpnI GATC 5 cut(s) 144, 507, 753, 846, 1026
DpnII GATC 5 cut(s) 142, 505, 751, 844, 1024
EaeI YGGCCR 1 cut(s) 127
EagI CGGCCG 1 cut(s) 127
Eam1104I CTCTTC 2 cut(s) 573, 615
EarI CTCTTC 2 cut(s) 573, 615
EciI GGCGGA 1 cut(s) 331
Ecl136II GAGCTC 2 cut(s) 761, 1142
EclXI CGGCCG 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 360
Eco24I GRGCYC 2 cut(s) 763, 1144
Eco47I GGWCC 1 cut(s) 268
Eco52I CGGCCG 1 cut(s) 127
Eco53kI GAGCTC 2 cut(s) 761, 1142
Eco81I CCTNAGG 1 cut(s) 171
Eco88I CYCGRG 3 cut(s) 60, 272, 371
Eco91I GGTNACC 1 cut(s) 185
EcoICRI GAGCTC 2 cut(s) 761, 1142
EcoO65I GGTNACC 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 360
EcoT38I GRGCYC 2 cut(s) 763, 1144
ErhI CCWWGG 1 cut(s) 360
FaeI CATG 3 cut(s) 389, 851, 1355
FalI AAGNNNNNCTT 4 cut(s) 722, 754, 923, 955
FaqI GGGAC 1 cut(s) 1094
FatI CATG 3 cut(s) 385, 847, 1351
FauNDI CATATG 1 cut(s) 400
FbaI TGATCA 1 cut(s) 844
FblI GTMKAC 1 cut(s) 41
Fnu4HI GCNGC 9 cut(s) 100, 225, 228, 377, 998, 1169, 1241, 1278, 1334
FriOI GRGCYC 2 cut(s) 763, 1144
Fsp4HI GCNGC 9 cut(s) 100, 225, 228, 377, 998, 1169, 1241, 1278, 1334
FspBI CTAG 1 cut(s) 1059
GlaI GCGC 1 cut(s) 168
GluI GCNGC 9 cut(s) 100, 225, 228, 377, 998, 1169, 1241, 1278, 1334
GsuI CTGGAG 1 cut(s) 1128
HaeIII GGCC 2 cut(s) 129, 649
HapII CCGG 7 cut(s) 96, 126, 242, 330, 440, 509, 965
HgaI GACGC 2 cut(s) 173, 456
HhaI GCGC 1 cut(s) 169
Hin1I GRCGYC 2 cut(s) 390, 467
Hin1II CATG 3 cut(s) 389, 851, 1355
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HindIII AAGCTT 1 cut(s) 1220
HinfI GANTC 8 cut(s) 65, 89, 149, 262, 884, 1055, 1067, 1361
HpaII CCGG 7 cut(s) 96, 126, 242, 330, 440, 509, 965
HphI GGTGA 5 cut(s) 84, 197, 653, 746, 854
Hpy166II GTNNAC 2 cut(s) 42, 1249
Hpy188I TCNGA 9 cut(s) 73, 212, 220, 427, 562, 670, 1072, 1139, 1177
Hpy8I GTNNAC 2 cut(s) 42, 1249
Hpy99I CGWCG 6 cut(s) 89, 143, 167, 287, 290, 768
HpyAV CCTTC 6 cut(s) 176, 250, 830, 925, 1294, 1381
HpyCH4III ACNGT 6 cut(s) 107, 290, 478, 1085, 1093, 1183
HpyCH4IV ACGT 2 cut(s) 390, 909
HpyCH4V TGCA 2 cut(s) 521, 683
HpyF10VI GCNNNNNNNGC 4 cut(s) 376, 382, 404, 605
HpyF3I CTNAG 8 cut(s) 171, 219, 231, 251, 366, 471, 1151, 1329
HpySE526I ACGT 2 cut(s) 390, 909
Hsp92I GRCGYC 2 cut(s) 390, 467
Hsp92II CATG 3 cut(s) 389, 851, 1355
HspAI GCGC 1 cut(s) 167
Kpn2I TCCGGA 2 cut(s) 439, 508
Ksp22I TGATCA 1 cut(s) 844
Kzo9I GATC 5 cut(s) 142, 505, 751, 844, 1024
LmnI GCTCC 4 cut(s) 344, 442, 1139, 1147
Lsp1109I GCAGC 6 cut(s) 388, 1009, 1180, 1227, 1264, 1345
LweI GCATC 4 cut(s) 394, 520, 532, 1189
MaeI CTAG 1 cut(s) 1059
MaeII ACGT 2 cut(s) 390, 909
MaeIII GTNAC 3 cut(s) 185, 290, 734
MalI GATC 5 cut(s) 144, 507, 753, 846, 1026
MbiI CCGCTC 1 cut(s) 1384
MboI GATC 5 cut(s) 142, 505, 751, 844, 1024
MhlI GDGCHC 2 cut(s) 763, 1144
MluCI AATT 6 cut(s) 50, 420, 712, 782, 1044, 1210
MlyI GAGTC 3 cut(s) 59, 83, 1370
MmeI TCCRAC 3 cut(s) 96, 378, 685
MroI TCCGGA 2 cut(s) 439, 508
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 6 cut(s) 321, 492, 594, 797, 918, 948
MslI CAYNNNNRTG 1 cut(s) 852
MspI CCGG 7 cut(s) 96, 126, 242, 330, 440, 509, 965
MspR9I CCNGG 3 cut(s) 96, 203, 966
Mva1269I GAATGC 1 cut(s) 454
MvaI CCWGG 1 cut(s) 203
MvnI CGCG 1 cut(s) 167
MwoI GCNNNNNNNGC 4 cut(s) 376, 382, 404, 605
NciI CCSGG 2 cut(s) 96, 966
NdeI CATATG 1 cut(s) 400
NdeII GATC 5 cut(s) 142, 505, 751, 844, 1024
NlaIII CATG 3 cut(s) 389, 851, 1355
NlaIV GGNNCC 3 cut(s) 340, 438, 963
NmuCI GTSAC 2 cut(s) 185, 734
PaeR7I CTCGAG 1 cut(s) 371
PagI TCATGA 1 cut(s) 847
PcsI WCGNNNNNNNCGW 2 cut(s) 144, 279
PctI GAATGC 1 cut(s) 454
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 5 cut(s) 149, 262, 884, 1055, 1067
PflFI GACNNNGTC 1 cut(s) 107
PfoI TCCNGGA 1 cut(s) 964
PkrI GCNGC 9 cut(s) 101, 226, 229, 378, 999, 1170, 1242, 1279, 1335
PleI GAGTC 3 cut(s) 59, 83, 1369
PpsI GAGTC 3 cut(s) 59, 83, 1369
Psp124BI GAGCTC 2 cut(s) 763, 1144
Psp6I CCWGG 1 cut(s) 201
PspEI GGTNACC 1 cut(s) 185
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 3 cut(s) 340, 438, 963
PspPI GGNCC 2 cut(s) 268, 647
PspXI VCTCGAGB 1 cut(s) 371
PstNI CAGNNNCTG 2 cut(s) 238, 1240
PsyI GACNNNGTC 1 cut(s) 107
RseI CAYNNNNRTG 1 cut(s) 852
SacI GAGCTC 2 cut(s) 763, 1144
SaqAI TTAA 6 cut(s) 321, 492, 594, 797, 918, 948
SatI GCNGC 9 cut(s) 100, 225, 228, 377, 998, 1169, 1241, 1278, 1334
Sau3AI GATC 5 cut(s) 142, 505, 751, 844, 1024
Sau96I GGNCC 2 cut(s) 268, 647
SchI GAGTC 3 cut(s) 59, 83, 1370
ScrFI CCNGG 3 cut(s) 96, 203, 966
SduI GDGCHC 2 cut(s) 763, 1144
SfaNI GCATC 4 cut(s) 394, 520, 532, 1189
SfcI CTRYAG 1 cut(s) 1281
Sfr274I CTCGAG 1 cut(s) 371
SgrAI CRCCGGYG 1 cut(s) 329
SinI GGWCC 1 cut(s) 268
SlaI CTCGAG 1 cut(s) 371
SmiMI CAYNNNNRTG 1 cut(s) 852
SmlI CTYRAG 3 cut(s) 371, 902, 1115
SmoI CTYRAG 3 cut(s) 371, 902, 1115
Sse9I AATT 6 cut(s) 50, 420, 712, 782, 1044, 1210
SsiI CCGC 7 cut(s) 99, 224, 227, 333, 342, 383, 1384
SspMI CTAG 1 cut(s) 1059
SstI GAGCTC 2 cut(s) 763, 1144
StyD4I CCNGG 3 cut(s) 94, 201, 964
StyI CCWWGG 1 cut(s) 360
TaaI ACNGT 6 cut(s) 107, 290, 478, 1085, 1093, 1183
TaiI ACGT 2 cut(s) 393, 912
TaqI TCGA 1 cut(s) 372
TasI AATT 6 cut(s) 50, 420, 712, 782, 1044, 1210
TauI GCSGC 3 cut(s) 102, 227, 230
TfiI GAWTC 5 cut(s) 149, 262, 884, 1055, 1067
Tru1I TTAA 6 cut(s) 321, 492, 594, 797, 918, 948
Tru9I TTAA 6 cut(s) 321, 492, 594, 797, 918, 948
TseFI GTSAC 2 cut(s) 185, 734
TseI GCWGC 6 cut(s) 376, 997, 1168, 1240, 1277, 1333
Tsp45I GTSAC 2 cut(s) 185, 734
Tth111I GACNNNGTC 1 cut(s) 107
VpaK11BI GGWCC 1 cut(s) 268
XapI RAATTY 2 cut(s) 420, 782
XhoI CTCGAG 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 41
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 1 cut(s) 1059
ZraI GACGTC 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.