Rmu_co8261167.1_g000001

Protein LTV1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8261167.1
OG0008366
Physical Location & Seq
Forward (+)
187 .. 809
623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8261167.1_g000001.1.cds

Sequence Viewer

Length: 555 bp
atggggagaaagaagaagttcattgacaagaaaaagtcgtctactttccaattagtcgcccgagactcctccgaccccaactacgacgactcacccggcggcgaccgtgtcttcatccaagtctccggccgacctaacgacgatcccgattctatcttcgccgacgcggctgaggacgaagaaggtgaccactattacgaccaggctttcggaaactctgaggcggcggctcagcccctgccggagaaactgaggaaggagattctggacctcgggtttcccgacgacggttacaactatttgaaccatttgagggagattaagaacaccggcggtggctcggcctattactccaaccccaaggctaagctcgagcagcttccgcatgacgtcaaggcatatgatgcttcaagattgcgaatttcggagaatgaggctccggatgagaatgctatctacaatgtggcgtctaagacggtcaatgtgagggttaagaaagctgttgatccggaagtttctgcattgcttgatgctgatagcgatgcttcgctgttc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTV

Protein Analysis

185

Amino Acids

20.48

Weight (kDa)

4.73

Isoelectric Point (pI)

42.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 393
AccI GTMKAC 1 cut(s) 41
AccII CGCG 1 cut(s) 167
AccIII TCCGGA 2 cut(s) 439, 508
AciI CCGC 6 cut(s) 99, 167, 224, 227, 333, 383
AclWI GGATC 2 cut(s) 137, 500
AcoI YGGCCR 1 cut(s) 127
AcsI RAATTY 1 cut(s) 420
AcyI GRCGYC 2 cut(s) 390, 467
AfiI CCNNNNNNNGG 2 cut(s) 287, 313
AgsI TTSAA 2 cut(s) 304, 411
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 3 cut(s) 370, 379, 500
AluI AGCT 3 cut(s) 370, 379, 500
Alw26I GTCTC 2 cut(s) 57, 127
AlwI GGATC 2 cut(s) 137, 500
AlwNI CAGNNNCTG 1 cut(s) 238
Ama87I CYCGRG 3 cut(s) 60, 272, 371
Aor13HI TCCGGA 2 cut(s) 439, 508
AoxI GGCC 2 cut(s) 127, 342
ApeKI GCWGC 1 cut(s) 376
ApoI RAATTY 1 cut(s) 420
ArsI GACNNNNNNTTYG 2 cut(s) 191, 223
Asp700I GAANNNNTTC 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 268
AsuC2I CCSGG 1 cut(s) 96
AsuHPI GGTGA 2 cut(s) 84, 197
AvaI CYCGRG 3 cut(s) 60, 272, 371
AvaII GGWCC 1 cut(s) 268
BbsI GAAGAC 1 cut(s) 103
BbvCI CCTCAGC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 388
BciT130I CCWGG 1 cut(s) 203
BcnI CCSGG 1 cut(s) 96
BcoDI GTCTC 2 cut(s) 57, 127
BglI GCCNNNNNGGC 1 cut(s) 167
BisI GCNGC 5 cut(s) 100, 168, 225, 228, 377
BlpI GCTNAGC 2 cut(s) 231, 366
BlsI GCNGC 5 cut(s) 101, 169, 226, 229, 378
Bme1390I CCNGG 2 cut(s) 96, 203
Bme18I GGWCC 1 cut(s) 268
BmeT110I CYCGRG 3 cut(s) 60, 272, 371
BmgT120I GGNCC 1 cut(s) 268
BmiI GGNNCC 1 cut(s) 438
BmrFI CCNGG 2 cut(s) 96, 203
BmsI GCATC 3 cut(s) 394, 520, 532
BpiI GAAGAC 1 cut(s) 103
Bpu10I CCTNAGC 1 cut(s) 171
Bpu1102I GCTNAGC 2 cut(s) 231, 366
BpuMI CCSGG 1 cut(s) 96
BsaHI GRCGYC 2 cut(s) 390, 467
BsaJI CCNNGG 2 cut(s) 271, 360
BsaWI WCCGGW 2 cut(s) 439, 508
Bsc4I CCNNNNNNNGG 2 cut(s) 287, 313
Bse118I RCCGGY 1 cut(s) 329
Bse3DI GCAATG 1 cut(s) 521
BseAI TCCGGA 2 cut(s) 439, 508
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 2 cut(s) 271, 360
BseGI GGATG 2 cut(s) 114, 448
BseLI CCNNNNNNNGG 2 cut(s) 287, 313
BseMI GCAATG 1 cut(s) 521
BseMII CTCAG 4 cut(s) 162, 210, 242, 245
BseRI GAGGAG 1 cut(s) 58
BseX3I CGGCCG 1 cut(s) 127
BseXI GCAGC 1 cut(s) 388
Bsh1236I CGCG 1 cut(s) 167
Bsh1285I CGRYCG 2 cut(s) 106, 130
BshFI GGCC 2 cut(s) 129, 344
BsiEI CGRYCG 2 cut(s) 106, 130
BsiHKCI CYCGRG 3 cut(s) 60, 272, 371
BsiSI CCGG 6 cut(s) 96, 126, 242, 330, 440, 509
BslI CCNNNNNNNGG 2 cut(s) 287, 313
BsmAI GTCTC 2 cut(s) 57, 127
BsmI GAATGC 1 cut(s) 454
BsnI GGCC 2 cut(s) 129, 344
BsoBI CYCGRG 3 cut(s) 60, 272, 371
Bsp13I TCCGGA 2 cut(s) 439, 508
Bsp143I GATC 2 cut(s) 142, 505
Bsp1720I GCTNAGC 2 cut(s) 231, 366
BspACI CCGC 6 cut(s) 99, 167, 224, 227, 333, 383
BspANI GGCC 2 cut(s) 129, 344
BspCNI CTCAG 4 cut(s) 163, 211, 243, 244
BspEI TCCGGA 2 cut(s) 439, 508
BspFNI CGCG 1 cut(s) 167
BspLI GGNNCC 1 cut(s) 438
BspPI GGATC 2 cut(s) 137, 500
BsrDI GCAATG 1 cut(s) 521
BsrFI RCCGGY 1 cut(s) 329
BssAI RCCGGY 1 cut(s) 329
BssECI CCNNGG 2 cut(s) 271, 360
BssMI GATC 2 cut(s) 142, 505
BssNI GRCGYC 2 cut(s) 390, 467
BssT1I CCWWGG 1 cut(s) 360
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 3 cut(s) 107, 290, 478
BstACI GRCGYC 2 cut(s) 390, 467
BstAPI GCANNNNNTGC 1 cut(s) 404
BstDEI CTNAG 6 cut(s) 171, 219, 231, 251, 366, 471
BstEII GGTNACC 1 cut(s) 185
BstF5I GGATG 2 cut(s) 114, 448
BstFNI CGCG 1 cut(s) 167
BstKTI GATC 2 cut(s) 145, 508
BstMAI GTCTC 2 cut(s) 57, 127
BstMBI GATC 2 cut(s) 142, 505
BstMCI CGRYCG 2 cut(s) 106, 130
BstMWI GCNNNNNNNGC 4 cut(s) 167, 376, 382, 404
BstNI CCWGG 1 cut(s) 203
BstPI GGTNACC 1 cut(s) 185
BstSCI CCNGG 2 cut(s) 94, 201
BstUI CGCG 1 cut(s) 167
BstV1I GCAGC 1 cut(s) 388
BstV2I GAAGAC 1 cut(s) 103
BstZI CGGCCG 1 cut(s) 127
BsuRI GGCC 2 cut(s) 129, 344
BtsCI GGATG 2 cut(s) 114, 448
CaiI CAGNNNCTG 1 cut(s) 238
Cfr10I RCCGGY 1 cut(s) 329
Cfr13I GGNCC 1 cut(s) 268
CseI GACGC 2 cut(s) 173, 456
CviAII CATG 1 cut(s) 386
DdeI CTNAG 6 cut(s) 171, 219, 231, 251, 366, 471
DpnI GATC 2 cut(s) 144, 507
DpnII GATC 2 cut(s) 142, 505
EaeI YGGCCR 1 cut(s) 127
EagI CGGCCG 1 cut(s) 127
EclXI CGGCCG 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 360
Eco47I GGWCC 1 cut(s) 268
Eco52I CGGCCG 1 cut(s) 127
Eco88I CYCGRG 3 cut(s) 60, 272, 371
Eco91I GGTNACC 1 cut(s) 185
EcoO65I GGTNACC 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 360
ErhI CCWWGG 1 cut(s) 360
FaeI CATG 1 cut(s) 389
FaiI YATR 3 cut(s) 387, 400, 402
FatI CATG 1 cut(s) 385
FauNDI CATATG 1 cut(s) 400
FblI GTMKAC 1 cut(s) 41
Fnu4HI GCNGC 5 cut(s) 100, 168, 225, 228, 377
FokI GGATG 2 cut(s) 101, 455
Fsp4HI GCNGC 5 cut(s) 100, 168, 225, 228, 377
GluI GCNGC 5 cut(s) 100, 168, 225, 228, 377
HaeIII GGCC 2 cut(s) 129, 344
HapII CCGG 6 cut(s) 96, 126, 242, 330, 440, 509
HgaI GACGC 2 cut(s) 173, 456
Hin1I GRCGYC 2 cut(s) 390, 467
Hin1II CATG 1 cut(s) 389
HinfI GANTC 4 cut(s) 65, 89, 149, 262
HpaII CCGG 6 cut(s) 96, 126, 242, 330, 440, 509
HphI GGTGA 2 cut(s) 84, 197
Hpy166II GTNNAC 1 cut(s) 42
Hpy188I TCNGA 4 cut(s) 73, 212, 220, 427
Hpy188III TCNNGA 6 cut(s) 146, 266, 281, 411, 440, 509
Hpy8I GTNNAC 1 cut(s) 42
Hpy99I CGWCG 5 cut(s) 89, 143, 167, 287, 290
HpyAV CCTTC 2 cut(s) 176, 250
HpyCH4III ACNGT 3 cut(s) 107, 290, 478
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 1 cut(s) 521
HpyF10VI GCNNNNNNNGC 4 cut(s) 167, 376, 382, 404
HpyF3I CTNAG 6 cut(s) 171, 219, 231, 251, 366, 471
HpySE526I ACGT 1 cut(s) 390
Hsp92I GRCGYC 2 cut(s) 390, 467
Hsp92II CATG 1 cut(s) 389
Kpn2I TCCGGA 2 cut(s) 439, 508
Kzo9I GATC 2 cut(s) 142, 505
LmnI GCTCC 1 cut(s) 442
Lsp1109I GCAGC 1 cut(s) 388
LweI GCATC 3 cut(s) 394, 520, 532
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 2 cut(s) 185, 290
MalI GATC 2 cut(s) 144, 507
MboI GATC 2 cut(s) 142, 505
MboII GAAGA 4 cut(s) 25, 103, 148, 191
MluCI AATT 2 cut(s) 50, 420
MlyI GAGTC 2 cut(s) 59, 83
MmeI TCCRAC 2 cut(s) 96, 378
MnlI CCTC 8 cut(s) 79, 166, 214, 246, 281, 306, 427, 480
MroI TCCGGA 2 cut(s) 439, 508
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 2 cut(s) 321, 492
MspI CCGG 6 cut(s) 96, 126, 242, 330, 440, 509
MspR9I CCNGG 2 cut(s) 96, 203
Mva1269I GAATGC 1 cut(s) 454
MvaI CCWGG 1 cut(s) 203
MvnI CGCG 1 cut(s) 167
MwoI GCNNNNNNNGC 4 cut(s) 167, 376, 382, 404
NciI CCSGG 1 cut(s) 96
NdeI CATATG 1 cut(s) 400
NdeII GATC 2 cut(s) 142, 505
NlaIII CATG 1 cut(s) 389
NlaIV GGNNCC 1 cut(s) 438
NmeAIII GCCGAG 1 cut(s) 320
NmuCI GTSAC 1 cut(s) 185
PaeR7I CTCGAG 1 cut(s) 371
PcsI WCGNNNNNNNCGW 2 cut(s) 144, 279
PctI GAATGC 1 cut(s) 454
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 2 cut(s) 149, 262
PflFI GACNNNGTC 1 cut(s) 107
PkrI GCNGC 5 cut(s) 101, 169, 226, 229, 378
PleI GAGTC 2 cut(s) 59, 83
PpsI GAGTC 2 cut(s) 59, 83
Psp6I CCWGG 1 cut(s) 201
PspEI GGTNACC 1 cut(s) 185
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 438
PspPI GGNCC 1 cut(s) 268
PspXI VCTCGAGB 1 cut(s) 371
PstNI CAGNNNCTG 1 cut(s) 238
PsyI GACNNNGTC 1 cut(s) 107
SaqAI TTAA 2 cut(s) 321, 492
SatI GCNGC 5 cut(s) 100, 168, 225, 228, 377
Sau3AI GATC 2 cut(s) 142, 505
Sau96I GGNCC 1 cut(s) 268
SchI GAGTC 2 cut(s) 59, 83
ScrFI CCNGG 2 cut(s) 96, 203
SetI ASST 7 cut(s) 136, 187, 273, 372, 381, 393, 502
SfaNI GCATC 3 cut(s) 394, 520, 532
Sfr274I CTCGAG 1 cut(s) 371
SgrAI CRCCGGYG 1 cut(s) 329
SinI GGWCC 1 cut(s) 268
SlaI CTCGAG 1 cut(s) 371
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 2 cut(s) 50, 420
SsiI CCGC 6 cut(s) 99, 167, 224, 227, 333, 383
StyD4I CCNGG 2 cut(s) 94, 201
StyI CCWWGG 1 cut(s) 360
TaaI ACNGT 3 cut(s) 107, 290, 478
TaiI ACGT 1 cut(s) 393
TaqI TCGA 1 cut(s) 372
TasI AATT 2 cut(s) 50, 420
TauI GCSGC 4 cut(s) 102, 170, 227, 230
TfiI GAWTC 2 cut(s) 149, 262
Tru1I TTAA 2 cut(s) 321, 492
Tru9I TTAA 2 cut(s) 321, 492
TseFI GTSAC 1 cut(s) 185
TseI GCWGC 1 cut(s) 376
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 2 cut(s) 10, 103
Tth111I GACNNNGTC 1 cut(s) 107
VpaK11BI GGWCC 1 cut(s) 268
XapI RAATTY 1 cut(s) 420
XhoI CTCGAG 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 41
XmnI GAANNNNTTC 1 cut(s) 17
ZraI GACGTC 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.