Rmu_sc0002132.1_g000026

Protein LTV1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002132.1
OG0008366
Physical Location & Seq
Forward (+)
95929 .. 96279
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002132.1_g000026.1.cds

Sequence Viewer

Length: 351 bp
atgacgactcaccggcggcgaccgagttttcatccaagtcttcggcaacccaacgacgatcccgattcgatcttggacgacacgcctgaggacgaagaaggtgaccactattacgaccaggctttcggaaactctaaggcggcggctcagcccctgccggagagactgaggaaggagattttggacctcgggtttcccgacgacggttacaactatttgaaccatttgagggagattaagaacaccggcggtggctcagcctattactccaaccccaaggctaagctcgagcagcttccgcatgacgtcaaggtgagctcatattctgtttgcaaaaattttcagttataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTV

Protein Analysis

116

Amino Acids

13.25

Weight (kDa)

5.44

Isoelectric Point (pI)

58.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 349
AatII GACGTC 1 cut(s) 309
AciI CCGC 5 cut(s) 16, 140, 143, 249, 299
AclWI GGATC 1 cut(s) 53
AcsI RAATTY 1 cut(s) 337
AcyI GRCGYC 1 cut(s) 306
AfiI CCNNNNNNNGG 2 cut(s) 203, 229
AgsI TTSAA 1 cut(s) 220
AjnI CCWGG 1 cut(s) 117
AjuI GAANNNNNNNTTGG 2 cut(s) 164, 196
AluBI AGCT 3 cut(s) 286, 295, 318
AluI AGCT 3 cut(s) 286, 295, 318
Alw21I GWGCWC 1 cut(s) 320
Alw26I GTCTC 1 cut(s) 157
AlwI GGATC 1 cut(s) 53
AlwNI CAGNNNCTG 1 cut(s) 154
Ama87I CYCGRG 2 cut(s) 188, 287
ApeKI GCWGC 1 cut(s) 292
ApoI RAATTY 1 cut(s) 337
ArsI GACNNNNNNTTYG 2 cut(s) 107, 139
AspS9I GGNCC 1 cut(s) 184
AsuHPI GGTGA 2 cut(s) 113, 325
AvaI CYCGRG 2 cut(s) 188, 287
AvaII GGWCC 1 cut(s) 184
AxyI CCTNAGG 1 cut(s) 87
BanII GRGCYC 1 cut(s) 320
BbsI GAAGAC 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 320
BbvI GCAGC 1 cut(s) 304
BciT130I CCWGG 1 cut(s) 119
BcoDI GTCTC 1 cut(s) 157
BisI GCNGC 4 cut(s) 17, 141, 144, 293
BlpI GCTNAGC 3 cut(s) 147, 256, 282
BlsI GCNGC 4 cut(s) 18, 142, 145, 294
Bme1390I CCNGG 1 cut(s) 119
Bme18I GGWCC 1 cut(s) 184
BmeT110I CYCGRG 2 cut(s) 188, 287
BmgT120I GGNCC 1 cut(s) 184
BmrFI CCNGG 1 cut(s) 119
BpiI GAAGAC 1 cut(s) 32
Bpu1102I GCTNAGC 3 cut(s) 147, 256, 282
BsaHI GRCGYC 1 cut(s) 306
BsaJI CCNNGG 2 cut(s) 187, 276
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 229
Bse118I RCCGGY 2 cut(s) 12, 245
Bse21I CCTNAGG 1 cut(s) 87
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 2 cut(s) 187, 276
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 2 cut(s) 203, 229
BseMII CTCAG 4 cut(s) 78, 158, 161, 270
BseXI GCAGC 1 cut(s) 304
Bsh1285I CGRYCG 1 cut(s) 23
BsiEI CGRYCG 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 320
BsiHKCI CYCGRG 2 cut(s) 188, 287
BsiSI CCGG 3 cut(s) 13, 158, 246
BslI CCNNNNNNNGG 2 cut(s) 203, 229
BsmAI GTCTC 1 cut(s) 157
BsoBI CYCGRG 2 cut(s) 188, 287
Bsp1286I GDGCHC 1 cut(s) 320
Bsp143I GATC 2 cut(s) 58, 69
Bsp1720I GCTNAGC 3 cut(s) 147, 256, 282
BspACI CCGC 5 cut(s) 16, 140, 143, 249, 299
BspCNI CTCAG 4 cut(s) 79, 159, 160, 269
BspPI GGATC 1 cut(s) 53
BsrFI RCCGGY 2 cut(s) 12, 245
BssAI RCCGGY 2 cut(s) 12, 245
BssECI CCNNGG 2 cut(s) 187, 276
BssMI GATC 2 cut(s) 58, 69
BssNI GRCGYC 1 cut(s) 306
BssT1I CCWWGG 1 cut(s) 276
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 206
BstACI GRCGYC 1 cut(s) 306
BstDEI CTNAG 6 cut(s) 87, 135, 147, 167, 256, 282
BstEII GGTNACC 1 cut(s) 101
BstF5I GGATG 1 cut(s) 31
BstKTI GATC 2 cut(s) 61, 72
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 2 cut(s) 58, 69
BstMCI CGRYCG 1 cut(s) 23
BstMWI GCNNNNNNNGC 2 cut(s) 292, 298
BstNI CCWGG 1 cut(s) 119
BstPI GGTNACC 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 117
BstV1I GCAGC 1 cut(s) 304
BstV2I GAAGAC 1 cut(s) 32
Bsu36I CCTNAGG 1 cut(s) 87
BtsCI GGATG 1 cut(s) 31
CaiI CAGNNNCTG 1 cut(s) 154
Cfr10I RCCGGY 2 cut(s) 12, 245
Cfr13I GGNCC 1 cut(s) 184
CviAII CATG 1 cut(s) 302
CviJI RGCY 9 cut(s) 122, 146, 151, 255, 260, 281, 286, 295, 318
CviKI_1 RGCY 9 cut(s) 122, 146, 151, 255, 260, 281, 286, 295, 318
DdeI CTNAG 6 cut(s) 87, 135, 147, 167, 256, 282
DpnI GATC 2 cut(s) 60, 71
DpnII GATC 2 cut(s) 58, 69
Ecl136II GAGCTC 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 320
Eco47I GGWCC 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 318
Eco81I CCTNAGG 1 cut(s) 87
Eco88I CYCGRG 2 cut(s) 188, 287
Eco91I GGTNACC 1 cut(s) 101
EcoICRI GAGCTC 1 cut(s) 318
EcoO65I GGTNACC 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 276
EcoT38I GRGCYC 1 cut(s) 320
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 1 cut(s) 305
FaiI YATR 3 cut(s) 303, 322, 349
FatI CATG 1 cut(s) 301
Fnu4HI GCNGC 4 cut(s) 17, 141, 144, 293
FokI GGATG 1 cut(s) 18
FriOI GRGCYC 1 cut(s) 320
Fsp4HI GCNGC 4 cut(s) 17, 141, 144, 293
GluI GCNGC 4 cut(s) 17, 141, 144, 293
HapII CCGG 3 cut(s) 13, 158, 246
Hin1I GRCGYC 1 cut(s) 306
Hin1II CATG 1 cut(s) 305
HinfI GANTC 2 cut(s) 7, 65
HpaII CCGG 3 cut(s) 13, 158, 246
HphI GGTGA 2 cut(s) 113, 325
Hpy188I TCNGA 1 cut(s) 128
Hpy188III TCNNGA 2 cut(s) 62, 197
Hpy99I CGWCG 3 cut(s) 59, 203, 206
HpyAV CCTTC 2 cut(s) 92, 166
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 1 cut(s) 333
HpyF10VI GCNNNNNNNGC 2 cut(s) 292, 298
HpyF3I CTNAG 6 cut(s) 87, 135, 147, 167, 256, 282
HpySE526I ACGT 1 cut(s) 306
Hsp92I GRCGYC 1 cut(s) 306
Hsp92II CATG 1 cut(s) 305
Kzo9I GATC 2 cut(s) 58, 69
LpnPI CCDG 7 cut(s) 26, 99, 104, 131, 167, 171, 259
Lsp1109I GCAGC 1 cut(s) 304
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 2 cut(s) 101, 206
MalI GATC 2 cut(s) 60, 71
MboI GATC 2 cut(s) 58, 69
MboII GAAGA 2 cut(s) 32, 107
MhlI GDGCHC 1 cut(s) 320
MluCI AATT 1 cut(s) 337
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 4 cut(s) 82, 162, 197, 222
MseI TTAA 1 cut(s) 237
MspI CCGG 3 cut(s) 13, 158, 246
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 2 cut(s) 292, 298
NdeII GATC 2 cut(s) 58, 69
NlaIII CATG 1 cut(s) 305
NmuCI GTSAC 1 cut(s) 101
PaeR7I CTCGAG 1 cut(s) 287
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 195
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 4 cut(s) 18, 142, 145, 294
PsiI TTATAA 1 cut(s) 349
Psp124BI GAGCTC 1 cut(s) 320
Psp6I CCWGG 1 cut(s) 117
PspEI GGTNACC 1 cut(s) 101
PspGI CCWGG 1 cut(s) 117
PspPI GGNCC 1 cut(s) 184
PspXI VCTCGAGB 1 cut(s) 287
PstNI CAGNNNCTG 1 cut(s) 154
SacI GAGCTC 1 cut(s) 320
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 4 cut(s) 17, 141, 144, 293
Sau3AI GATC 2 cut(s) 58, 69
Sau96I GGNCC 1 cut(s) 184
ScrFI CCNGG 1 cut(s) 119
SduI GDGCHC 1 cut(s) 320
SetI ASST 7 cut(s) 103, 189, 288, 297, 309, 315, 320
Sfr274I CTCGAG 1 cut(s) 287
SgrAI CRCCGGYG 2 cut(s) 12, 245
SinI GGWCC 1 cut(s) 184
SlaI CTCGAG 1 cut(s) 287
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 1 cut(s) 337
SsiI CCGC 5 cut(s) 16, 140, 143, 249, 299
SstI GAGCTC 1 cut(s) 320
StyD4I CCNGG 1 cut(s) 117
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 1 cut(s) 206
TaiI ACGT 1 cut(s) 309
TaqI TCGA 2 cut(s) 68, 288
TaqII GACCGA 1 cut(s) 37
TasI AATT 1 cut(s) 337
TauI GCSGC 3 cut(s) 19, 143, 146
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 1 cut(s) 292
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 20
VpaK11BI GGWCC 1 cut(s) 184
XapI RAATTY 1 cut(s) 337
XhoI CTCGAG 1 cut(s) 287
ZraI GACGTC 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.